RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PREX1Q8TCU6 1659 aa29.62■■■□□ 2.33
TRIM54-202ENST00000380075 LAMC1P11047 1609 aa29.6■■■□□ 2.33
TRIM54-202ENST00000380075 GPRASP1Q5JY77 1395 aa29.58■■■□□ 2.33
TRIM54-202ENST00000380075 PTPRTO14522 1441 aa29.56■■■□□ 2.32
TRIM54-202ENST00000380075 SYNMO15061 1565 aa29.55■■■□□ 2.32
TRIM54-202ENST00000380075 HNRNPUQ00839 825 aaKnown RBP eCLIP29.55■■■□□ 2.32
TRIM54-202ENST00000380075 IDI1Q13907 227 aa29.54■■■□□ 2.32
TRIM54-202ENST00000380075 SETD1BQ9UPS6 1966 aaKnown RBP29.53■■■□□ 2.32
TRIM54-202ENST00000380075 MRS2Q9HD23 443 aa29.51■■■□□ 2.31
TRIM54-202ENST00000380075 SLC52A1Q9NWF4 448 aa29.51■■■□□ 2.31
TRIM54-202ENST00000380075 UGGT1Q9NYU2 1555 aa29.51■■■□□ 2.31
TRIM54-202ENST00000380075 ST20-MTHFSA0A0A6YYL1 179 aa29.5■■■□□ 2.31
TRIM54-202ENST00000380075 NEFLP07196 543 aa29.5■■■□□ 2.31
TRIM54-202ENST00000380075 TRPM2O94759 1503 aa29.49■■■□□ 2.31
TRIM54-202ENST00000380075 MYO3AQ8NEV4 1616 aa29.49■■■□□ 2.31
TRIM54-202ENST00000380075 NLRP1Q9C000 1473 aa29.49■■■□□ 2.31
TRIM54-202ENST00000380075 SPHKAPQ2M3C7 1700 aa29.48■■■□□ 2.31
TRIM54-202ENST00000380075 RGL3Q3MIN7 710 aa29.48■■■□□ 2.31
TRIM54-202ENST00000380075 CCDC184Q52MB2 194 aa29.46■■■□□ 2.31
TRIM54-202ENST00000380075 STAC3Q96MF2 364 aa29.46■■■□□ 2.31
TRIM54-202ENST00000380075 LMTK3Q96Q04 1460 aa29.45■■■□□ 2.3
TRIM54-202ENST00000380075 A2ML1A8K2U0 1454 aa29.44■■■□□ 2.3
TRIM54-202ENST00000380075 KTN1Q86UP2 1357 aaKnown RBP29.44■■■□□ 2.3
TRIM54-202ENST00000380075 CEP170BQ9Y4F5 1589 aaPredicted RBP29.43■■■□□ 2.3
TRIM54-202ENST00000380075 POLR3GLQ9BT43 218 aa29.43■■■□□ 2.3
TRIM54-202ENST00000380075 HSPA2P54652 639 aa29.42■■■□□ 2.3
TRIM54-202ENST00000380075 PIK3C2BO00750 1634 aa29.41■■■□□ 2.3
TRIM54-202ENST00000380075 FKBP8Q14318 412 aa29.41■■■□□ 2.3
TRIM54-202ENST00000380075 STAG3Q9UJ98 1225 aa29.41■■■□□ 2.3
TRIM54-202ENST00000380075 CHGAP10645 457 aaKnown RBP29.41■■■□□ 2.3
TRIM54-202ENST00000380075 CLTCL1P53675 1640 aa29.39■■■□□ 2.3
TRIM54-202ENST00000380075 NEURL4Q96JN8 1562 aa29.39■■■□□ 2.29
TRIM54-202ENST00000380075 ZNF142P52746 1687 aaPredicted RBP29.37■■■□□ 2.29
TRIM54-202ENST00000380075 ZBED9Q6R2W3 1325 aa29.36■■■□□ 2.29
TRIM54-202ENST00000380075 FAM9BQ8IZU0 186 aa29.36■■■□□ 2.29
TRIM54-202ENST00000380075 THEMISQ8N1K5 641 aaPredicted RBP29.36■■■□□ 2.29
TRIM54-202ENST00000380075 NBPF1Q3BBV0 1214 aa29.35■■■□□ 2.29
TRIM54-202ENST00000380075 UBR1Q8IWV7 1749 aa29.32■■■□□ 2.28
TRIM54-202ENST00000380075 ADGRB3O60242 1522 aa29.32■■■□□ 2.28
TRIM54-202ENST00000380075 TMEM131LA2VDJ0 1609 aa29.31■■■□□ 2.28
TRIM54-202ENST00000380075 RALBP1Q15311 655 aa29.3■■■□□ 2.28
TRIM54-202ENST00000380075 TESK2Q96S53 571 aa29.26■■■□□ 2.27
TRIM54-202ENST00000380075 TMEM2Q9UHN6 1383 aa29.25■■■□□ 2.27
TRIM54-202ENST00000380075 KDM5AP29375 1690 aaKnown RBP29.25■■■□□ 2.27
TRIM54-202ENST00000380075 BRD4O60885 1362 aaPredicted RBP29.24■■■□□ 2.27
TRIM54-202ENST00000380075 MYBBP1AQ9BQG0 1328 aaKnown RBP29.23■■■□□ 2.27
TRIM54-202ENST00000380075 MYO5BQ9ULV0 1848 aa29.23■■■□□ 2.27
TRIM54-202ENST00000380075 KIF1BO60333 1816 aa29.22■■■□□ 2.27
TRIM54-202ENST00000380075 TMF1P82094 1093 aa29.22■■■□□ 2.27
TRIM54-202ENST00000380075 LTKP29376 864 aa29.21■■■□□ 2.27
TRIM54-202ENST00000380075 NUTM2DQ5VT03 806 aaPredicted RBP29.21■■■□□ 2.27
TRIM54-202ENST00000380075 NCKAP5LQ9HCH0 1330 aa29.21■■■□□ 2.27
TRIM54-202ENST00000380075 IQGAP1P46940 1657 aa29.2■■■□□ 2.27
TRIM54-202ENST00000380075 ARHGAP23Q9P227 1491 aa29.2■■■□□ 2.27
TRIM54-202ENST00000380075 SLIT1O75093 1534 aa29.2■■■□□ 2.26
TRIM54-202ENST00000380075 TXNDC2Q86VQ3 553 aa29.2■■■□□ 2.26
TRIM54-202ENST00000380075 ANKLE2Q86XL3 938 aa29.2■■■□□ 2.26
TRIM54-202ENST00000380075 KIAA1210Q9ULL0 1709 aa29.2■■■□□ 2.26
TRIM54-202ENST00000380075 ERICH6BQ5W0A0 696 aa29.19■■■□□ 2.26
TRIM54-202ENST00000380075 RIMS2Q9UQ26 1411 aa29.18■■■□□ 2.26
TRIM54-202ENST00000380075 TMC1Q8TDI8 760 aa29.18■■■□□ 2.26
TRIM54-202ENST00000380075 DISP3Q9P2K9 1392 aa29.18■■■□□ 2.26
TRIM54-202ENST00000380075 EID1Q9Y6B2 187 aa29.17■■■□□ 2.26
TRIM54-202ENST00000380075 ZFYVE9O95405 1425 aa29.17■■■□□ 2.26
TRIM54-202ENST00000380075 BCANQ96GW7 911 aa29.17■■■□□ 2.26
TRIM54-202ENST00000380075 MYOM2P54296 1465 aa29.16■■■□□ 2.26
TRIM54-202ENST00000380075 PNISRQ8TF01 805 aaKnown RBP29.16■■■□□ 2.26
TRIM54-202ENST00000380075 PARD3Q8TEW0 1356 aa29.16■■■□□ 2.26
TRIM54-202ENST00000380075 SCAF11Q99590 1463 aaKnown RBP29.16■■■□□ 2.26
TRIM54-202ENST00000380075 HDGFP51858 240 aaKnown RBP29.13■■■□□ 2.25
TRIM54-202ENST00000380075 RPGRIP1LQ68CZ1 1315 aa29.13■■■□□ 2.25
TRIM54-202ENST00000380075 PER1O15534 1290 aaPredicted RBP29.13■■■□□ 2.25
TRIM54-202ENST00000380075 SENP3Q9H4L4 574 aaPredicted RBP29.13■■■□□ 2.25
TRIM54-202ENST00000380075 LRPPRCP42704 1394 aaKnown RBP29.12■■■□□ 2.25
TRIM54-202ENST00000380075 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.12■■■□□ 2.25
TRIM54-202ENST00000380075 NEXMIFQ5QGS0 1516 aa29.11■■■□□ 2.25
TRIM54-202ENST00000380075 EIF3AQ14152 1382 aaKnown RBP29.1■■■□□ 2.25
TRIM54-202ENST00000380075 STRCQ7RTU9 1775 aa29.1■■■□□ 2.25
TRIM54-202ENST00000380075 CDCA8Q53HL2 280 aa29.09■■■□□ 2.25
TRIM54-202ENST00000380075 NLRP13Q86W25 1043 aa29.09■■■□□ 2.25
TRIM54-202ENST00000380075 CNGB1Q14028 1251 aaPredicted RBP29.08■■■□□ 2.25
TRIM54-202ENST00000380075 SMG6Q86US8 1419 aaKnown RBP29.08■■■□□ 2.25
TRIM54-202ENST00000380075 VGFO15240 615 aaPredicted RBP29.06■■■□□ 2.24
TRIM54-202ENST00000380075 SLC24A1O60721 1099 aa29.06■■■□□ 2.24
TRIM54-202ENST00000380075 IFT172Q9UG01 1749 aa29.05■■■□□ 2.24
TRIM54-202ENST00000380075 NPHP4O75161 1426 aaPredicted RBP29.04■■■□□ 2.24
TRIM54-202ENST00000380075 MED14O60244 1454 aa29.04■■■□□ 2.24
TRIM54-202ENST00000380075 ADGRF5Q8IZF2 1346 aa29.04■■■□□ 2.24
TRIM54-202ENST00000380075 PLEKHG1Q9ULL1 1385 aa29.02■■■□□ 2.24
TRIM54-202ENST00000380075 NRXN1Q9ULB1 1477 aa29.02■■■□□ 2.24
TRIM54-202ENST00000380075 PANK3Q9H999 370 aa29.01■■■□□ 2.23
TRIM54-202ENST00000380075 PPLO60437 1756 aa29.01■■■□□ 2.23
TRIM54-202ENST00000380075 INSRP06213 1382 aa29.01■■■□□ 2.23
TRIM54-202ENST00000380075 TSHZ2Q9NRE2 1034 aa29■■■□□ 2.23
TRIM54-202ENST00000380075 DMRT2Q9Y5R5 561 aa29■■■□□ 2.23
TRIM54-202ENST00000380075 SLC26A8Q96RN1 970 aa28.99■■■□□ 2.23
TRIM54-202ENST00000380075 NUDCQ9Y266 331 aa28.98■■■□□ 2.23
TRIM54-202ENST00000380075 ADAMTS13Q76LX8 1427 aa28.92■■■□□ 2.22
TRIM54-202ENST00000380075 SETBP1Q9Y6X0 1596 aa28.92■■■□□ 2.22
TRIM54-202ENST00000380075 PPP4R2Q9NY27 417 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms