RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 LTKP29376 864 aa21.87■■□□□ 1.09
CCDC40-202ENST00000374876 TMEM131LA2VDJ0 1609 aa21.87■■□□□ 1.09
CCDC40-202ENST00000374876 HIRIP3Q9BW71 556 aaPredicted RBP21.87■■□□□ 1.09
CCDC40-202ENST00000374876 TXNDC2Q86VQ3 553 aa21.86■■□□□ 1.09
CCDC40-202ENST00000374876 TMEM2Q9UHN6 1383 aa21.86■■□□□ 1.09
CCDC40-202ENST00000374876 NUTM2DQ5VT03 806 aaPredicted RBP21.85■■□□□ 1.09
CCDC40-202ENST00000374876 ANKRD30BQ9BXX2 1392 aa21.85■■□□□ 1.09
CCDC40-202ENST00000374876 CCDC144AA2RUR9 1427 aa21.85■■□□□ 1.09
CCDC40-202ENST00000374876 ZNF326Q5BKZ1 582 aaKnown RBP21.85■■□□□ 1.09
CCDC40-202ENST00000374876 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
CCDC40-202ENST00000374876 KDM5AP29375 1690 aaKnown RBP21.83■■□□□ 1.09
CCDC40-202ENST00000374876 EID1Q9Y6B2 187 aa21.83■■□□□ 1.09
CCDC40-202ENST00000374876 ARHGAP23Q9P227 1491 aa21.82■■□□□ 1.08
CCDC40-202ENST00000374876 SLIT1O75093 1534 aa21.81■■□□□ 1.08
CCDC40-202ENST00000374876 RGL3Q3MIN7 710 aa21.81■■□□□ 1.08
CCDC40-202ENST00000374876 KIF1BO60333 1816 aa21.8■■□□□ 1.08
CCDC40-202ENST00000374876 DMRT2Q9Y5R5 561 aa21.8■■□□□ 1.08
CCDC40-202ENST00000374876 RIMS2Q9UQ26 1411 aa21.79■■□□□ 1.08
CCDC40-202ENST00000374876 SCAF11Q99590 1463 aaKnown RBP21.78■■□□□ 1.08
CCDC40-202ENST00000374876 POLR1AO95602 1720 aaPredicted RBP21.77■■□□□ 1.08
CCDC40-202ENST00000374876 NEURL4Q96JN8 1562 aa21.77■■□□□ 1.08
CCDC40-202ENST00000374876 ZFYVE9O95405 1425 aa21.77■■□□□ 1.08
CCDC40-202ENST00000374876 HDGFP51858 240 aaKnown RBP21.76■■□□□ 1.07
CCDC40-202ENST00000374876 PELP1Q8IZL8 1130 aaKnown RBP21.76■■□□□ 1.07
CCDC40-202ENST00000374876 BCANQ96GW7 911 aa21.75■■□□□ 1.07
CCDC40-202ENST00000374876 NPHP4O75161 1426 aaPredicted RBP21.75■■□□□ 1.07
CCDC40-202ENST00000374876 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.73■■□□□ 1.07
CCDC40-202ENST00000374876 SPATA31E1Q6ZUB1 1445 aa21.73■■□□□ 1.07
CCDC40-202ENST00000374876 MED14O60244 1454 aa21.73■■□□□ 1.07
CCDC40-202ENST00000374876 ANP32CO43423 234 aa21.72■■□□□ 1.07
CCDC40-202ENST00000374876 SLC26A8Q96RN1 970 aa21.71■■□□□ 1.07
CCDC40-202ENST00000374876 NEXMIFQ5QGS0 1516 aa21.69■■□□□ 1.06
CCDC40-202ENST00000374876 IQGAP1P46940 1657 aa21.69■■□□□ 1.06
CCDC40-202ENST00000374876 L3MBTL2Q969R5 705 aa21.69■■□□□ 1.06
CCDC40-202ENST00000374876 RPGRIP1LQ68CZ1 1315 aa21.69■■□□□ 1.06
CCDC40-202ENST00000374876 PLEKHG1Q9ULL1 1385 aa21.67■■□□□ 1.06
CCDC40-202ENST00000374876 VGFO15240 615 aaPredicted RBP21.67■■□□□ 1.06
CCDC40-202ENST00000374876 ZNF335Q9H4Z2 1342 aaPredicted RBP21.66■■□□□ 1.06
CCDC40-202ENST00000374876 CCER2I3L3R5 266 aa21.66■■□□□ 1.06
CCDC40-202ENST00000374876 HSPA5P11021 654 aaKnown RBP21.64■■□□□ 1.05
CCDC40-202ENST00000374876 EIF4G2P78344 907 aaKnown RBP eCLIP21.64■■□□□ 1.05
CCDC40-202ENST00000374876 KDM2AQ9Y2K7 1162 aa21.64■■□□□ 1.05
CCDC40-202ENST00000374876 ADGRF5Q8IZF2 1346 aa21.64■■□□□ 1.05
CCDC40-202ENST00000374876 PPLO60437 1756 aa21.63■■□□□ 1.05
CCDC40-202ENST00000374876 DCAF11Q8TEB1 546 aa21.63■■□□□ 1.05
CCDC40-202ENST00000374876 ADAMTS13Q76LX8 1427 aa21.6■■□□□ 1.05
CCDC40-202ENST00000374876 TBX22Q9Y458 520 aa21.59■■□□□ 1.05
CCDC40-202ENST00000374876 IFT172Q9UG01 1749 aa21.58■■□□□ 1.05
CCDC40-202ENST00000374876 WASHC2AQ641Q2 1341 aa21.56■■□□□ 1.04
CCDC40-202ENST00000374876 NRXN3Q9Y4C0 1643 aa21.56■■□□□ 1.04
CCDC40-202ENST00000374876 SETBP1Q9Y6X0 1596 aa21.54■■□□□ 1.04
CCDC40-202ENST00000374876 NBPF8Q3BBV2 869 aa21.53■■□□□ 1.04
CCDC40-202ENST00000374876 METP08581 1390 aa21.53■■□□□ 1.04
CCDC40-202ENST00000374876 LTBP4Q8N2S1 1624 aa21.52■■□□□ 1.04
CCDC40-202ENST00000374876 STRCP1A6NGW2 1772 aa21.52■■□□□ 1.04
CCDC40-202ENST00000374876 KCNA6P17658 529 aa21.51■■□□□ 1.03
CCDC40-202ENST00000374876 MYOM2P54296 1465 aa21.5■■□□□ 1.03
CCDC40-202ENST00000374876 CFAP70Q5T0N1 1121 aa21.5■■□□□ 1.03
CCDC40-202ENST00000374876 ALKQ9UM73 1620 aa21.5■■□□□ 1.03
CCDC40-202ENST00000374876 PIK3C2GO75747 1445 aa21.5■■□□□ 1.03
CCDC40-202ENST00000374876 SUPT16HQ9Y5B9 1047 aaKnown RBP21.5■■□□□ 1.03
CCDC40-202ENST00000374876 TMEM132EQ6IEE7 984 aa21.49■■□□□ 1.03
CCDC40-202ENST00000374876 RBM33Q96EV2 1170 aaKnown RBP21.49■■□□□ 1.03
CCDC40-202ENST00000374876 AMOTL2Q9Y2J4 779 aa21.49■■□□□ 1.03
CCDC40-202ENST00000374876 DIP2AQ14689 1571 aa21.48■■□□□ 1.03
CCDC40-202ENST00000374876 CERKQ8TCT0 537 aa21.48■■□□□ 1.03
CCDC40-202ENST00000374876 NRXN1Q9ULB1 1477 aa21.48■■□□□ 1.03
CCDC40-202ENST00000374876 PTPRUQ92729 1446 aa21.48■■□□□ 1.03
CCDC40-202ENST00000374876 C14orf93Q9H972 538 aaKnown RBP21.48■■□□□ 1.03
CCDC40-202ENST00000374876 STAC3Q96MF2 364 aa21.47■■□□□ 1.03
CCDC40-202ENST00000374876 CHD2O14647 1828 aaKnown RBP21.47■■□□□ 1.03
CCDC40-202ENST00000374876 PROSER2Q86WR7 435 aaPredicted RBP21.45■■□□□ 1.02
CCDC40-202ENST00000374876 SETD1AO15047 1707 aaKnown RBP21.44■■□□□ 1.02
CCDC40-202ENST00000374876 CCDC7Q96M83 1385 aa21.44■■□□□ 1.02
CCDC40-202ENST00000374876 PIK3R4Q99570 1358 aa21.44■■□□□ 1.02
CCDC40-202ENST00000374876 STK26Q9P289 416 aa21.43■■□□□ 1.02
CCDC40-202ENST00000374876 CPS1P31327 1500 aa21.43■■□□□ 1.02
CCDC40-202ENST00000374876 LRRC7Q96NW7 1537 aa21.41■■□□□ 1.02
CCDC40-202ENST00000374876 C11orf95C9JLR9 678 aaPredicted RBP21.41■■□□□ 1.02
CCDC40-202ENST00000374876 NWD1Q149M9 1564 aa21.4■■□□□ 1.02
CCDC40-202ENST00000374876 PRAG1Q86YV5 1406 aa21.4■■□□□ 1.02
CCDC40-202ENST00000374876 TMEM94Q12767 1356 aa21.39■■□□□ 1.01
CCDC40-202ENST00000374876 ASXL1Q8IXJ9 1541 aa21.38■■□□□ 1.01
CCDC40-202ENST00000374876 NBPF1Q3BBV0 1214 aa21.38■■□□□ 1.01
CCDC40-202ENST00000374876 NKTRP30414 1462 aaKnown RBP21.36■■□□□ 1.01
CCDC40-202ENST00000374876 XRN1Q8IZH2 1706 aaKnown RBP21.35■■□□□ 1.01
CCDC40-202ENST00000374876 KIF7Q2M1P5 1343 aa21.35■■□□□ 1.01
CCDC40-202ENST00000374876 YTHDC2Q9H6S0 1430 aaKnown RBP21.35■■□□□ 1.01
CCDC40-202ENST00000374876 ROBO2Q9HCK4 1378 aa21.35■■□□□ 1.01
CCDC40-202ENST00000374876 LRPPRCP42704 1394 aaKnown RBP21.34■■□□□ 1.01
CCDC40-202ENST00000374876 XIRP1Q702N8 1843 aaKnown RBP21.34■■□□□ 1.01
CCDC40-202ENST00000374876 LAMC1P11047 1609 aa21.34■■□□□ 1.01
CCDC40-202ENST00000374876 WAPLQ7Z5K2 1190 aa21.33■■□□□ 1.01
CCDC40-202ENST00000374876 C14orf37Q86TY3 774 aa21.33■■□□□ 1.01
CCDC40-202ENST00000374876 TRAK1Q9UPV9 953 aa21.33■■□□□ 1
CCDC40-202ENST00000374876 USP47Q96K76 1375 aa21.32■■□□□ 1
CCDC40-202ENST00000374876 ADGRB1O14514 1584 aa21.32■■□□□ 1
CCDC40-202ENST00000374876 ABCC11Q96J66 1382 aa21.32■■□□□ 1
CCDC40-202ENST00000374876 UBAP1LF5GYI3 381 aa21.29■■□□□ 1
CCDC40-202ENST00000374876 PRKRIP1Q9H875 184 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms