RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 UNC13AQ9UPW8 1703 aa23.98■■□□□ 1.43
CCDC88B-202ENST00000356786 NUCB2P80303 420 aa23.98■■□□□ 1.43
CCDC88B-202ENST00000356786 MRC2Q9UBG0 1479 aa23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 PEG3Q9GZU2 1588 aa23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 CCAR2Q8N163 923 aaKnown RBP23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 HDAC5Q9UQL6 1122 aa23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 PKNOX2Q96KN3 472 aa23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 MCTP1Q6DN14 999 aa23.97■■□□□ 1.43
CCDC88B-202ENST00000356786 TRAK1Q9UPV9 953 aa23.96■■□□□ 1.43
CCDC88B-202ENST00000356786 ZNF644Q9H582 1327 aaPredicted RBP23.96■■□□□ 1.43
CCDC88B-202ENST00000356786 NGEFQ8N5V2 710 aa23.96■■□□□ 1.43
CCDC88B-202ENST00000356786 TPM3P06753 285 aa23.95■■□□□ 1.42
CCDC88B-202ENST00000356786 HDGFP51858 240 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-202ENST00000356786 BACH2Q9BYV9 841 aa23.95■■□□□ 1.42
CCDC88B-202ENST00000356786 LNPKQ9C0E8 428 aa23.95■■□□□ 1.42
CCDC88B-202ENST00000356786 NPHP1O15259 732 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 MAP7D2Q96T17 732 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 CREBRFQ8IUR6 639 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 CDCA7LQ96GN5 454 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 H3BQV1 296 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 IFFO2Q5TF58 517 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 PANK1Q8TE04 598 aa23.94■■□□□ 1.42
CCDC88B-202ENST00000356786 CCDC144AA2RUR9 1427 aa23.93■■□□□ 1.42
CCDC88B-202ENST00000356786 DNMBPQ6XZF7 1577 aa23.93■■□□□ 1.42
CCDC88B-202ENST00000356786 PRKCSHP14314 528 aaPredicted RBP23.93■■□□□ 1.42
CCDC88B-202ENST00000356786 GORABQ5T7V8 394 aa23.93■■□□□ 1.42
CCDC88B-202ENST00000356786 CHMP3Q9Y3E7 222 aa23.92■■□□□ 1.42
CCDC88B-202ENST00000356786 DNAJC5BQ9UF47 199 aa23.92■■□□□ 1.42
CCDC88B-202ENST00000356786 FYCO1Q9BQS8 1478 aa23.91■■□□□ 1.42
CCDC88B-202ENST00000356786 NCOA2Q15596 1464 aa23.91■■□□□ 1.42
CCDC88B-202ENST00000356786 MSH5O43196 834 aa23.91■■□□□ 1.42
CCDC88B-202ENST00000356786 FAM184AQ8NB25 1140 aa23.9■■□□□ 1.42
CCDC88B-202ENST00000356786 MTERF4Q7Z6M4 381 aaKnown RBP23.89■■□□□ 1.42
CCDC88B-202ENST00000356786 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.89■■□□□ 1.42
CCDC88B-202ENST00000356786 RNF214Q8ND24 703 aa23.89■■□□□ 1.41
CCDC88B-202ENST00000356786 TPM2P07951 284 aa23.88■■□□□ 1.41
CCDC88B-202ENST00000356786 IFT140Q96RY7 1462 aa23.88■■□□□ 1.41
CCDC88B-202ENST00000356786 ISY1Q9ULR0 285 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-202ENST00000356786 RRBP1Q9P2E9 1410 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-202ENST00000356786 GPS2Q13227 327 aa23.87■■□□□ 1.41
CCDC88B-202ENST00000356786 NUTM2DQ5VT03 806 aaPredicted RBP23.87■■□□□ 1.41
CCDC88B-202ENST00000356786 TRHP20396 242 aaPredicted RBP23.86■■□□□ 1.41
CCDC88B-202ENST00000356786 AKNAQ7Z591 1439 aa23.86■■□□□ 1.41
CCDC88B-202ENST00000356786 ANO2Q9NQ90 1003 aa23.86■■□□□ 1.41
CCDC88B-202ENST00000356786 PRDM2Q13029 1718 aa23.86■■□□□ 1.41
CCDC88B-202ENST00000356786 EFCAB5A4FU69 1503 aa23.85■■□□□ 1.41
CCDC88B-202ENST00000356786 A0A0U1RQG5 324 aaPredicted RBP23.85■■□□□ 1.41
CCDC88B-202ENST00000356786 ZNF330Q9Y3S2 320 aaPredicted RBP23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 CLSTN1O94985 981 aa23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 AAMPQ13685 434 aa23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 RASSF8Q8NHQ8 419 aa23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 CCDC39Q9UFE4 941 aa23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 ADAMTS8Q9UP79 889 aa23.84■■□□□ 1.41
CCDC88B-202ENST00000356786 DIAPH3Q9NSV4 1193 aa23.83■■□□□ 1.41
CCDC88B-202ENST00000356786 BRD4O60885 1362 aaPredicted RBP23.83■■□□□ 1.41
CCDC88B-202ENST00000356786 IFT57Q9NWB7 429 aa23.83■■□□□ 1.41
CCDC88B-202ENST00000356786 HOMER1Q86YM7 354 aa23.83■■□□□ 1.4
CCDC88B-202ENST00000356786 OSCARQ8IYS5 282 aa23.83■■□□□ 1.4
CCDC88B-202ENST00000356786 RBM10P98175 930 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-202ENST00000356786 TEX35Q5T0J7 233 aa23.82■■□□□ 1.4
CCDC88B-202ENST00000356786 CAVIN1Q6NZI2 390 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-202ENST00000356786 INTS3Q68E01 1043 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-202ENST00000356786 BICD2Q8TD16 824 aa23.81■■□□□ 1.4
CCDC88B-202ENST00000356786 WASHC2CQ9Y4E1 1318 aa23.81■■□□□ 1.4
CCDC88B-202ENST00000356786 ABCA10Q8WWZ4 1543 aa23.81■■□□□ 1.4
CCDC88B-202ENST00000356786 VPS37CA5D8V6 355 aaPredicted RBP23.8■■□□□ 1.4
CCDC88B-202ENST00000356786 ZKSCAN1P17029 563 aaPredicted RBP23.8■■□□□ 1.4
CCDC88B-202ENST00000356786 API5Q9BZZ5 524 aaKnown RBP23.8■■□□□ 1.4
CCDC88B-202ENST00000356786 UACAQ9BZF9 1416 aa23.8■■□□□ 1.4
CCDC88B-202ENST00000356786 RUNDC1Q96C34 613 aa23.8■■□□□ 1.4
CCDC88B-202ENST00000356786 PES1O00541 588 aaKnown RBP23.79■■□□□ 1.4
CCDC88B-202ENST00000356786 RIPK4P57078 832 aa23.79■■□□□ 1.4
CCDC88B-202ENST00000356786 SETQ01105 290 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-202ENST00000356786 SMC3Q9UQE7 1217 aa23.77■■□□□ 1.4
CCDC88B-202ENST00000356786 RUFY2Q8WXA3 655 aa23.77■■□□□ 1.4
CCDC88B-202ENST00000356786 LAMC3Q9Y6N6 1575 aa23.76■■□□□ 1.39
CCDC88B-202ENST00000356786 TAF7LQ5H9L4 462 aa23.76■■□□□ 1.39
CCDC88B-202ENST00000356786 CCDC173Q0VFZ6 552 aa23.76■■□□□ 1.39
CCDC88B-202ENST00000356786 TOMM22Q9NS69 142 aa23.76■■□□□ 1.39
CCDC88B-202ENST00000356786 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.76■■□□□ 1.39
CCDC88B-202ENST00000356786 PDZRN3Q9UPQ7 1066 aa23.75■■□□□ 1.39
CCDC88B-202ENST00000356786 AMPHP49418 695 aa23.75■■□□□ 1.39
CCDC88B-202ENST00000356786 BCL11BQ9C0K0 894 aaPredicted RBP23.75■■□□□ 1.39
CCDC88B-202ENST00000356786 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
CCDC88B-202ENST00000356786 TPD52L1Q16890 204 aaPredicted RBP23.75■■□□□ 1.39
CCDC88B-202ENST00000356786 CCDC184Q52MB2 194 aa23.74■■□□□ 1.39
CCDC88B-202ENST00000356786 CDC45O75419 566 aa23.74■■□□□ 1.39
CCDC88B-202ENST00000356786 TSR1Q2NL82 804 aaKnown RBP23.74■■□□□ 1.39
CCDC88B-202ENST00000356786 SASS6Q6UVJ0 657 aa23.74■■□□□ 1.39
CCDC88B-202ENST00000356786 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
CCDC88B-202ENST00000356786 CHMP4CQ96CF2 233 aa23.73■■□□□ 1.39
CCDC88B-202ENST00000356786 TIAM1Q13009 1591 aa23.73■■□□□ 1.39
CCDC88B-202ENST00000356786 ESPNB1AK53 854 aa23.72■■□□□ 1.39
CCDC88B-202ENST00000356786 TPM1P09493 284 aa23.72■■□□□ 1.39
CCDC88B-202ENST00000356786 GRPEL1Q9HAV7 217 aa23.72■■□□□ 1.39
CCDC88B-202ENST00000356786 LTV1Q96GA3 475 aaPredicted RBP23.72■■□□□ 1.39
CCDC88B-202ENST00000356786 PRG4Q92954 1404 aaPredicted RBP23.72■■□□□ 1.39
CCDC88B-202ENST00000356786 PRPF40AO75400 957 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-202ENST00000356786 MBD3O95983 291 aa23.71■■□□□ 1.39
CCDC88B-202ENST00000356786 HMGN5P82970 282 aaKnown RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms