RNA–Protein interactions for RNA: ENST00000344337.10

KPNA1-201, Transcript of karyopherin subunit alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA1, Length 6,830 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA1-201ENST00000344337 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
KPNA1-201ENST00000344337 CHMP5Q9NZZ3 219 aa9.66□□□□□ -0.86
KPNA1-201ENST00000344337 FAM177BA6PVY3 158 aa9.66□□□□□ -0.86
KPNA1-201ENST00000344337 DHX37Q8IY37 1157 aaKnown RBP9.66□□□□□ -0.86
KPNA1-201ENST00000344337 TCP11L2Q8N4U5 519 aa9.66□□□□□ -0.86
KPNA1-201ENST00000344337 LRRC9Q6ZRR7 1453 aa9.65□□□□□ -0.86
KPNA1-201ENST00000344337 IGHDP01880 384 aa9.65□□□□□ -0.86
KPNA1-201ENST00000344337 E9PSI1 815 aa9.65□□□□□ -0.86
KPNA1-201ENST00000344337 EXOSC9Q06265 439 aaKnown RBP9.65□□□□□ -0.86
KPNA1-201ENST00000344337 CFAP70Q5T0N1 1121 aa9.65□□□□□ -0.86
KPNA1-201ENST00000344337 ZNF771Q7L3S4 317 aaPredicted RBP9.65□□□□□ -0.86
KPNA1-201ENST00000344337 ANO2Q9NQ90 1003 aa9.65□□□□□ -0.86
KPNA1-201ENST00000344337 IGF1RP08069 1367 aa9.65□□□□□ -0.87
KPNA1-201ENST00000344337 FGD6Q6ZV73 1430 aa9.64□□□□□ -0.87
KPNA1-201ENST00000344337 PPP2R1AP30153 589 aa9.64□□□□□ -0.87
KPNA1-201ENST00000344337 CEBPZQ03701 1054 aaKnown RBP9.64□□□□□ -0.87
KPNA1-201ENST00000344337 IGSF3O75054 1194 aa9.64□□□□□ -0.87
KPNA1-201ENST00000344337 PRDM2Q13029 1718 aa9.64□□□□□ -0.87
KPNA1-201ENST00000344337 VPS37CA5D8V6 355 aaPredicted RBP9.64□□□□□ -0.87
KPNA1-201ENST00000344337 DDX11L8A8MPP1 907 aa9.64□□□□□ -0.87
KPNA1-201ENST00000344337 ZHX1Q9UKY1 873 aaPredicted RBP9.64□□□□□ -0.87
KPNA1-201ENST00000344337 MCCP23508 829 aa9.63□□□□□ -0.87
KPNA1-201ENST00000344337 ANKRD30AQ9BXX3 1397 aa9.63□□□□□ -0.87
KPNA1-201ENST00000344337 NOB1Q9ULX3 412 aaKnown RBP9.63□□□□□ -0.87
KPNA1-201ENST00000344337 PPFIA3O75145 1194 aa9.63□□□□□ -0.87
KPNA1-201ENST00000344337 GDPD2Q9HCC8 539 aa9.63□□□□□ -0.87
KPNA1-201ENST00000344337 XPCQ01831 940 aaPredicted RBP9.62□□□□□ -0.87
KPNA1-201ENST00000344337 TRERF1Q96PN7 1200 aa9.62□□□□□ -0.87
KPNA1-201ENST00000344337 MIS18AQ9NYP9 233 aa9.62□□□□□ -0.87
KPNA1-201ENST00000344337 HAP1P54257 671 aaPredicted RBP9.62□□□□□ -0.87
KPNA1-201ENST00000344337 CCDC144AA2RUR9 1427 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 CHMP4CQ96CF2 233 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 SMARCA4P51532 1647 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 ST18O60284 1047 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 GRPEL1Q9HAV7 217 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 KAT6BQ8WYB5 2073 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 GORABQ5T7V8 394 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 TSHZ3Q63HK5 1081 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 ZMYND15Q9H091 742 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 UACAQ9BZF9 1416 aa9.61□□□□□ -0.87
KPNA1-201ENST00000344337 SMARCA5O60264 1052 aaPredicted RBP9.61□□□□□ -0.87
KPNA1-201ENST00000344337 DCTN1Q14203 1278 aa9.6□□□□□ -0.87
KPNA1-201ENST00000344337 TNNT3P45378 269 aaPredicted RBP9.6□□□□□ -0.87
KPNA1-201ENST00000344337 PTMSP20962 102 aa9.6□□□□□ -0.87
KPNA1-201ENST00000344337 GNL2Q13823 731 aaKnown RBP9.6□□□□□ -0.87
KPNA1-201ENST00000344337 ZNF830Q96NB3 372 aaPredicted RBP9.6□□□□□ -0.87
KPNA1-201ENST00000344337 RBM27Q9P2N5 1060 aaKnown RBP9.6□□□□□ -0.87
KPNA1-201ENST00000344337 MCM4P33991 863 aa9.6□□□□□ -0.87
KPNA1-201ENST00000344337 HDGFL2Q7Z4V5 671 aaPredicted RBP9.59□□□□□ -0.87
KPNA1-201ENST00000344337 NEK4P51957 841 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 JPH4Q96JJ6 628 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 RBM42Q9BTD8 480 aaKnown RBP9.59□□□□□ -0.87
KPNA1-201ENST00000344337 ISY1Q9ULR0 285 aaKnown RBP9.59□□□□□ -0.87
KPNA1-201ENST00000344337 CGNL1Q0VF96 1302 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 FMNL2Q96PY5 1086 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 FIBPO43427 364 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 TBC1D2Q9BYX2 928 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 CBX1P83916 185 aa9.59□□□□□ -0.87
KPNA1-201ENST00000344337 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.58□□□□□ -0.88
KPNA1-201ENST00000344337 ESPNB1AK53 854 aa9.58□□□□□ -0.88
KPNA1-201ENST00000344337 RRBP1Q9P2E9 1410 aaKnown RBP9.57□□□□□ -0.88
KPNA1-201ENST00000344337 SPDYE4A6NLX3 237 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 PES1O00541 588 aaKnown RBP9.57□□□□□ -0.88
KPNA1-201ENST00000344337 AFAP1Q8N556 730 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 STK3Q13188 491 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 TTLL5Q6EMB2 1281 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 IFT57Q9NWB7 429 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 UQCRHLA0A096LP55 91 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 SYCE3A1L190 88 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 UQCRHP07919 91 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 SSFA2P28290 1259 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 MRE11P49959 708 aa9.57□□□□□ -0.88
KPNA1-201ENST00000344337 ZFP91Q96JP5 570 aaPredicted RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 AIMP1Q12904 312 aaKnown RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 FAM177A1Q8N128 213 aaPredicted RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 STK31Q9BXU1 1019 aa9.56□□□□□ -0.88
KPNA1-201ENST00000344337 NCOA2Q15596 1464 aa9.56□□□□□ -0.88
KPNA1-201ENST00000344337 WASHC2CQ9Y4E1 1318 aa9.56□□□□□ -0.88
KPNA1-201ENST00000344337 TOMM22Q9NS69 142 aa9.56□□□□□ -0.88
KPNA1-201ENST00000344337 SMG6Q86US8 1419 aaKnown RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 UPF3BQ9BZI7 483 aaKnown RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 RRAGDQ9NQL2 400 aaPredicted RBP9.56□□□□□ -0.88
KPNA1-201ENST00000344337 RUNDC1Q96C34 613 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 ATAD2BQ9ULI0 1458 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 ERICH4A6NGS2 130 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 TMEM57Q8N5G2 664 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 FKBP5Q13451 457 aaPredicted RBP9.55□□□□□ -0.88
KPNA1-201ENST00000344337 ERCC6Q03468 1493 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 AMPHP49418 695 aa9.55□□□□□ -0.88
KPNA1-201ENST00000344337 SPAG9O60271 1321 aaKnown RBP9.55□□□□□ -0.88
KPNA1-201ENST00000344337 PODXL2Q9NZ53 605 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 DDX19BQ9UMR2 479 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 DNAJC5BQ9UF47 199 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 BICD2Q8TD16 824 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 KIF16BQ96L93 1317 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 SYAP1Q96A49 352 aaPredicted RBP9.54□□□□□ -0.88
KPNA1-201ENST00000344337 FGD5Q6ZNL6 1462 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 H3BQV1 296 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 IFFO2Q5TF58 517 aa9.54□□□□□ -0.88
KPNA1-201ENST00000344337 IL1RAPL2Q9NP60 686 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms