RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SMG6Q86US8 1419 aaKnown RBP13.88□□□□□ -0.19
LIMA1-201ENST00000341247 KNSTRNQ9Y448 316 aa13.88□□□□□ -0.19
LIMA1-201ENST00000341247 YEATS2Q9ULM3 1422 aa13.87□□□□□ -0.19
LIMA1-201ENST00000341247 PARD3Q8TEW0 1356 aa13.87□□□□□ -0.19
LIMA1-201ENST00000341247 CDCA7LQ96GN5 454 aa13.87□□□□□ -0.19
LIMA1-201ENST00000341247 HECW2Q9P2P5 1572 aa13.86□□□□□ -0.19
LIMA1-201ENST00000341247 LRPPRCP42704 1394 aaKnown RBP13.85□□□□□ -0.19
LIMA1-201ENST00000341247 MLH3Q9UHC1 1453 aa13.85□□□□□ -0.19
LIMA1-201ENST00000341247 IFT172Q9UG01 1749 aa13.84□□□□□ -0.19
LIMA1-201ENST00000341247 CCDC136Q96JN2 1154 aa13.83□□□□□ -0.2
LIMA1-201ENST00000341247 RICTORQ6R327 1708 aa13.83□□□□□ -0.2
LIMA1-201ENST00000341247 RIMBP3CA6NJZ7 1639 aa13.83□□□□□ -0.2
LIMA1-201ENST00000341247 RIMBP3BA6NNM3 1639 aa13.83□□□□□ -0.2
LIMA1-201ENST00000341247 RIMBP3Q9UFD9 1639 aa13.83□□□□□ -0.2
LIMA1-201ENST00000341247 ERICH6BQ5W0A0 696 aa13.82□□□□□ -0.2
LIMA1-201ENST00000341247 DIP2CQ9Y2E4 1556 aa13.82□□□□□ -0.2
LIMA1-201ENST00000341247 MAP3K4Q9Y6R4 1608 aa13.82□□□□□ -0.2
LIMA1-201ENST00000341247 MYOM1P52179 1685 aa13.82□□□□□ -0.2
LIMA1-201ENST00000341247 TRAK1Q9UPV9 953 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 WASHC2CQ9Y4E1 1318 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 LMTK2Q8IWU2 1503 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 TMEM132EQ6IEE7 984 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 ADAMTS8Q9UP79 889 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 NOS1P29475 1434 aa13.81□□□□□ -0.2
LIMA1-201ENST00000341247 KIF1BO60333 1816 aa13.8□□□□□ -0.2
LIMA1-201ENST00000341247 ABCC3O15438 1527 aa13.8□□□□□ -0.2
LIMA1-201ENST00000341247 SCAF11Q99590 1463 aaKnown RBP13.8□□□□□ -0.2
LIMA1-201ENST00000341247 ADGRB3O60242 1522 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 PPP2R1AP30153 589 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 RCAN3Q9UKA8 241 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 TSPOAP1O95153 1857 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 PLIN1O60240 522 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 SYNMO15061 1565 aa13.79□□□□□ -0.2
LIMA1-201ENST00000341247 CDCA8Q53HL2 280 aa13.78□□□□□ -0.2
LIMA1-201ENST00000341247 WDR43Q15061 677 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIMA1-201ENST00000341247 CFAP74Q9C0B2 1584 aa13.78□□□□□ -0.2
LIMA1-201ENST00000341247 TNNT2P45379 298 aaPredicted RBP13.78□□□□□ -0.2
LIMA1-201ENST00000341247 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
LIMA1-201ENST00000341247 CCDC146Q8IYE0 955 aa13.77□□□□□ -0.2
LIMA1-201ENST00000341247 NRXN1Q9ULB1 1477 aa13.77□□□□□ -0.2
LIMA1-201ENST00000341247 EXOC6Q8TAG9 804 aa13.77□□□□□ -0.21
LIMA1-201ENST00000341247 NEO1Q92859 1461 aa13.76□□□□□ -0.21
LIMA1-201ENST00000341247 CAMSAP1Q5T5Y3 1602 aa13.76□□□□□ -0.21
LIMA1-201ENST00000341247 SAFB2Q14151 953 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIMA1-201ENST00000341247 RRP1P56182 461 aaKnown RBP13.76□□□□□ -0.21
LIMA1-201ENST00000341247 EIF3AQ14152 1382 aaKnown RBP13.76□□□□□ -0.21
LIMA1-201ENST00000341247 MYOM2P54296 1465 aa13.76□□□□□ -0.21
LIMA1-201ENST00000341247 ERVK-7P63135 1459 aa13.76□□□□□ -0.21
LIMA1-201ENST00000341247 PPLO60437 1756 aa13.75□□□□□ -0.21
LIMA1-201ENST00000341247 FAM69CQ0P6D2 419 aa13.75□□□□□ -0.21
LIMA1-201ENST00000341247 RNF123Q5XPI4 1314 aa13.74□□□□□ -0.21
LIMA1-201ENST00000341247 NEURL4Q96JN8 1562 aa13.74□□□□□ -0.21
LIMA1-201ENST00000341247 STAC3Q96MF2 364 aa13.74□□□□□ -0.21
LIMA1-201ENST00000341247 CARD14Q9BXL6 1004 aa13.74□□□□□ -0.21
LIMA1-201ENST00000341247 MYO5BQ9ULV0 1848 aa13.74□□□□□ -0.21
LIMA1-201ENST00000341247 KIAA1210Q9ULL0 1709 aa13.73□□□□□ -0.21
LIMA1-201ENST00000341247 FBXO31Q5XUX0 539 aaPredicted RBP13.73□□□□□ -0.21
LIMA1-201ENST00000341247 DIP2BQ9P265 1576 aa13.73□□□□□ -0.21
LIMA1-201ENST00000341247 ADGRB1O14514 1584 aa13.73□□□□□ -0.21
LIMA1-201ENST00000341247 PIK3C2GO75747 1445 aa13.73□□□□□ -0.21
LIMA1-201ENST00000341247 MSH5O43196 834 aa13.73□□□□□ -0.21
LIMA1-201ENST00000341247 IDI1Q13907 227 aa13.72□□□□□ -0.21
LIMA1-201ENST00000341247 PIK3C2BO00750 1634 aa13.72□□□□□ -0.21
LIMA1-201ENST00000341247 ANP32EQ9BTT0 268 aa13.71□□□□□ -0.21
LIMA1-201ENST00000341247 SLC12A5Q9H2X9 1139 aa13.71□□□□□ -0.21
LIMA1-201ENST00000341247 STK26Q9P289 416 aa13.71□□□□□ -0.21
LIMA1-201ENST00000341247 CENPJQ9HC77 1338 aaPredicted RBP13.71□□□□□ -0.21
LIMA1-201ENST00000341247 PDE3BQ13370 1112 aa13.69□□□□□ -0.22
LIMA1-201ENST00000341247 NEXMIFQ5QGS0 1516 aa13.69□□□□□ -0.22
LIMA1-201ENST00000341247 GLI2P10070 1586 aa13.68□□□□□ -0.22
LIMA1-201ENST00000341247 APAF1O14727 1248 aa13.67□□□□□ -0.22
LIMA1-201ENST00000341247 C14orf93Q9H972 538 aaKnown RBP13.67□□□□□ -0.22
LIMA1-201ENST00000341247 PLEKHH1Q9ULM0 1364 aa13.67□□□□□ -0.22
LIMA1-201ENST00000341247 ASXL1Q8IXJ9 1541 aa13.67□□□□□ -0.22
LIMA1-201ENST00000341247 NEUROD2Q15784 382 aa13.67□□□□□ -0.22
LIMA1-201ENST00000341247 SKAP1Q86WV1 359 aa13.67□□□□□ -0.22
LIMA1-201ENST00000341247 KDM5AP29375 1690 aaKnown RBP13.67□□□□□ -0.22
LIMA1-201ENST00000341247 BLMP54132 1417 aaPredicted RBP13.67□□□□□ -0.22
LIMA1-201ENST00000341247 ZC3H13Q5T200 1668 aaKnown RBP13.66□□□□□ -0.22
LIMA1-201ENST00000341247 MYO3AQ8NEV4 1616 aa13.66□□□□□ -0.22
LIMA1-201ENST00000341247 C20orf194Q5TEA3 1177 aa13.66□□□□□ -0.22
LIMA1-201ENST00000341247 MLECQ14165 292 aa13.66□□□□□ -0.22
LIMA1-201ENST00000341247 ERICH6Q7L0X2 663 aa13.65□□□□□ -0.22
LIMA1-201ENST00000341247 CRBNQ96SW2 442 aa13.65□□□□□ -0.22
LIMA1-201ENST00000341247 QRICH2Q9H0J4 1663 aa13.65□□□□□ -0.22
LIMA1-201ENST00000341247 MORC1Q86VD1 984 aa13.64□□□□□ -0.23
LIMA1-201ENST00000341247 PREX1Q8TCU6 1659 aa13.64□□□□□ -0.23
LIMA1-201ENST00000341247 CABP2Q9NPB3 220 aa13.64□□□□□ -0.23
LIMA1-201ENST00000341247 SETBP1Q9Y6X0 1596 aa13.63□□□□□ -0.23
LIMA1-201ENST00000341247 GOLGA2Q08379 1002 aa13.63□□□□□ -0.23
LIMA1-201ENST00000341247 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
LIMA1-201ENST00000341247 TMEM131LA2VDJ0 1609 aa13.62□□□□□ -0.23
LIMA1-201ENST00000341247 RRP7AQ9Y3A4 280 aaKnown RBP13.62□□□□□ -0.23
LIMA1-201ENST00000341247 KIF13AQ9H1H9 1805 aa13.62□□□□□ -0.23
LIMA1-201ENST00000341247 STAG3Q9UJ98 1225 aa13.62□□□□□ -0.23
LIMA1-201ENST00000341247 NSD3Q9BZ95 1437 aa13.62□□□□□ -0.23
LIMA1-201ENST00000341247 VGFO15240 615 aaPredicted RBP13.62□□□□□ -0.23
LIMA1-201ENST00000341247 ZMYM4Q5VZL5 1548 aa13.62□□□□□ -0.23
LIMA1-201ENST00000341247 ARHGEF28Q8N1W1 1705 aaKnown RBP13.62□□□□□ -0.23
LIMA1-201ENST00000341247 ARHGAP31Q2M1Z3 1444 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms