RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 ZNF335Q9H4Z2 1342 aaPredicted RBP28.43■■■□□ 2.14
SYNE4-202ENST00000340477 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.42■■■□□ 2.14
SYNE4-202ENST00000340477 ZFYVE9O95405 1425 aa28.41■■■□□ 2.14
SYNE4-202ENST00000340477 BCANQ96GW7 911 aa28.39■■■□□ 2.14
SYNE4-202ENST00000340477 ZNF326Q5BKZ1 582 aaKnown RBP28.38■■■□□ 2.13
SYNE4-202ENST00000340477 CPS1P31327 1500 aa28.38■■■□□ 2.13
SYNE4-202ENST00000340477 HRCP23327 699 aa28.36■■■□□ 2.13
SYNE4-202ENST00000340477 CCDC144AA2RUR9 1427 aa28.35■■■□□ 2.13
SYNE4-202ENST00000340477 IQSEC2Q5JU85 1478 aa28.35■■■□□ 2.13
SYNE4-202ENST00000340477 FOXD1Q16676 465 aa28.35■■■□□ 2.13
SYNE4-202ENST00000340477 PLEKHG1Q9ULL1 1385 aa28.34■■■□□ 2.13
SYNE4-202ENST00000340477 FBXO41Q8TF61 875 aa28.31■■■□□ 2.12
SYNE4-202ENST00000340477 NUTM2DQ5VT03 806 aaPredicted RBP28.27■■■□□ 2.12
SYNE4-202ENST00000340477 DIP2AQ14689 1571 aa28.27■■■□□ 2.12
SYNE4-202ENST00000340477 SLC26A8Q96RN1 970 aa28.26■■■□□ 2.11
SYNE4-202ENST00000340477 NEXMIFQ5QGS0 1516 aa28.26■■■□□ 2.11
SYNE4-202ENST00000340477 STRCP1A6NGW2 1772 aa28.24■■■□□ 2.11
SYNE4-202ENST00000340477 SENP3Q9H4L4 574 aaPredicted RBP28.23■■■□□ 2.11
SYNE4-202ENST00000340477 ILDR1Q86SU0 546 aaPredicted RBP28.22■■■□□ 2.11
SYNE4-202ENST00000340477 RPGRIP1LQ68CZ1 1315 aa28.21■■■□□ 2.11
SYNE4-202ENST00000340477 PPLO60437 1756 aa28.19■■■□□ 2.1
SYNE4-202ENST00000340477 TRIM26Q12899 539 aaPredicted RBP28.19■■■□□ 2.1
SYNE4-202ENST00000340477 SETBP1Q9Y6X0 1596 aa28.19■■■□□ 2.1
SYNE4-202ENST00000340477 NWD1Q149M9 1564 aa28.18■■■□□ 2.1
SYNE4-202ENST00000340477 TBX22Q9Y458 520 aa28.17■■■□□ 2.1
SYNE4-202ENST00000340477 VGFO15240 615 aaPredicted RBP28.16■■■□□ 2.1
SYNE4-202ENST00000340477 KCNA6P17658 529 aa28.16■■■□□ 2.1
SYNE4-202ENST00000340477 LRRC7Q96NW7 1537 aa28.16■■■□□ 2.1
SYNE4-202ENST00000340477 ADAMTS13Q76LX8 1427 aa28.16■■■□□ 2.1
SYNE4-202ENST00000340477 CHD2O14647 1828 aaKnown RBP28.15■■■□□ 2.1
SYNE4-202ENST00000340477 NKTRP30414 1462 aaKnown RBP28.15■■■□□ 2.1
SYNE4-202ENST00000340477 SPATA31E1Q6ZUB1 1445 aa28.14■■■□□ 2.1
SYNE4-202ENST00000340477 NRXN3Q9Y4C0 1643 aa28.14■■■□□ 2.09
SYNE4-202ENST00000340477 PIK3R4Q99570 1358 aa28.13■■■□□ 2.09
SYNE4-202ENST00000340477 ANKRD30BQ9BXX2 1392 aa28.11■■■□□ 2.09
SYNE4-202ENST00000340477 RGL3Q3MIN7 710 aa28.11■■■□□ 2.09
SYNE4-202ENST00000340477 IFT172Q9UG01 1749 aa28.11■■■□□ 2.09
SYNE4-202ENST00000340477 UBAP1LF5GYI3 381 aa28.1■■■□□ 2.09
SYNE4-202ENST00000340477 PROSER2Q86WR7 435 aaPredicted RBP28.06■■■□□ 2.08
SYNE4-202ENST00000340477 XIRP1Q702N8 1843 aaKnown RBP28.05■■■□□ 2.08
SYNE4-202ENST00000340477 TOM1O60784 492 aa28.04■■■□□ 2.08
SYNE4-202ENST00000340477 TMEM94Q12767 1356 aa28.03■■■□□ 2.08
SYNE4-202ENST00000340477 ALKQ9UM73 1620 aa28■■■□□ 2.07
SYNE4-202ENST00000340477 XRN1Q8IZH2 1706 aaKnown RBP28■■■□□ 2.07
SYNE4-202ENST00000340477 SETD1AO15047 1707 aaKnown RBP27.99■■■□□ 2.07
SYNE4-202ENST00000340477 MYOM2P54296 1465 aa27.98■■■□□ 2.07
SYNE4-202ENST00000340477 AMOTL2Q9Y2J4 779 aa27.98■■■□□ 2.07
SYNE4-202ENST00000340477 SCAF1Q9H7N4 1312 aaKnown RBP27.97■■■□□ 2.07
SYNE4-202ENST00000340477 METP08581 1390 aa27.97■■■□□ 2.07
SYNE4-202ENST00000340477 MSH6P52701 1360 aa27.96■■■□□ 2.07
SYNE4-202ENST00000340477 ADGRF5Q8IZF2 1346 aa27.95■■■□□ 2.07
SYNE4-202ENST00000340477 PTPRUQ92729 1446 aa27.95■■■□□ 2.07
SYNE4-202ENST00000340477 C14orf37Q86TY3 774 aa27.95■■■□□ 2.06
SYNE4-202ENST00000340477 PIK3C2GO75747 1445 aa27.93■■■□□ 2.06
SYNE4-202ENST00000340477 NCOA3Q9Y6Q9 1424 aa27.93■■■□□ 2.06
SYNE4-202ENST00000340477 LAMC1P11047 1609 aa27.93■■■□□ 2.06
SYNE4-202ENST00000340477 PIP4K2BP78356 416 aa27.92■■■□□ 2.06
SYNE4-202ENST00000340477 RBM33Q96EV2 1170 aaKnown RBP27.9■■■□□ 2.06
SYNE4-202ENST00000340477 NRXN1Q9ULB1 1477 aa27.89■■■□□ 2.05
SYNE4-202ENST00000340477 STAC3Q96MF2 364 aa27.88■■■□□ 2.05
SYNE4-202ENST00000340477 PTCH1Q13635 1447 aa27.86■■■□□ 2.05
SYNE4-202ENST00000340477 DCAF11Q8TEB1 546 aa27.86■■■□□ 2.05
SYNE4-202ENST00000340477 DHX57Q6P158 1386 aaKnown RBP27.85■■■□□ 2.05
SYNE4-202ENST00000340477 PRAG1Q86YV5 1406 aa27.83■■■□□ 2.05
SYNE4-202ENST00000340477 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.82■■■□□ 2.04
SYNE4-202ENST00000340477 KDM2AQ9Y2K7 1162 aa27.82■■■□□ 2.04
SYNE4-202ENST00000340477 C19orf44Q9H6X5 657 aa27.81■■■□□ 2.04
SYNE4-202ENST00000340477 KNDC1Q76NI1 1749 aa27.81■■■□□ 2.04
SYNE4-202ENST00000340477 ATF3P18847 181 aa27.8■■■□□ 2.04
SYNE4-202ENST00000340477 CADPS2Q86UW7 1296 aa27.79■■■□□ 2.04
SYNE4-202ENST00000340477 C14orf93Q9H972 538 aaKnown RBP27.79■■■□□ 2.04
SYNE4-202ENST00000340477 ASXL1Q8IXJ9 1541 aa27.78■■■□□ 2.04
SYNE4-202ENST00000340477 DCCP43146 1447 aa27.78■■■□□ 2.04
SYNE4-202ENST00000340477 ADGRL3Q9HAR2 1447 aa27.77■■■□□ 2.04
SYNE4-202ENST00000340477 LRPPRCP42704 1394 aaKnown RBP27.77■■■□□ 2.04
SYNE4-202ENST00000340477 NALCNQ8IZF0 1738 aa27.77■■■□□ 2.04
SYNE4-202ENST00000340477 ROBO2Q9HCK4 1378 aa27.76■■■□□ 2.03
SYNE4-202ENST00000340477 YTHDC2Q9H6S0 1430 aaKnown RBP27.75■■■□□ 2.03
SYNE4-202ENST00000340477 CFAP70Q5T0N1 1121 aa27.75■■■□□ 2.03
SYNE4-202ENST00000340477 STK26Q9P289 416 aa27.75■■■□□ 2.03
SYNE4-202ENST00000340477 TECPR2O15040 1411 aa27.75■■■□□ 2.03
SYNE4-202ENST00000340477 ROBO1Q9Y6N7 1651 aa27.75■■■□□ 2.03
SYNE4-202ENST00000340477 TMEM132EQ6IEE7 984 aa27.74■■■□□ 2.03
SYNE4-202ENST00000340477 FAM135BQ49AJ0 1406 aa27.73■■■□□ 2.03
SYNE4-202ENST00000340477 ABCC11Q96J66 1382 aa27.73■■■□□ 2.03
SYNE4-202ENST00000340477 SLAIN2Q9P270 581 aa27.72■■■□□ 2.03
SYNE4-202ENST00000340477 NEUROD1Q13562 356 aa27.71■■■□□ 2.03
SYNE4-202ENST00000340477 PCGF6Q9BYE7 350 aa27.71■■■□□ 2.03
SYNE4-202ENST00000340477 HSPA1LP34931 641 aa27.69■■■□□ 2.02
SYNE4-202ENST00000340477 SIN3AQ96ST3 1273 aa27.69■■■□□ 2.02
SYNE4-202ENST00000340477 KIAA1210Q9ULL0 1709 aa27.68■■■□□ 2.02
SYNE4-202ENST00000340477 ADGRB1O14514 1584 aa27.66■■■□□ 2.02
SYNE4-202ENST00000340477 DLC1Q96QB1 1528 aa27.63■■■□□ 2.01
SYNE4-202ENST00000340477 CDC42BPGQ6DT37 1551 aa27.63■■■□□ 2.01
SYNE4-202ENST00000340477 L3MBTL2Q969R5 705 aa27.62■■■□□ 2.01
SYNE4-202ENST00000340477 SIRT1Q96EB6 747 aa27.62■■■□□ 2.01
SYNE4-202ENST00000340477 MST1RQ04912 1400 aa27.61■■■□□ 2.01
SYNE4-202ENST00000340477 WAPLQ7Z5K2 1190 aa27.6■■■□□ 2.01
SYNE4-202ENST00000340477 PHLPP1O60346 1717 aa27.6■■■□□ 2.01
SYNE4-202ENST00000340477 TONSLQ96HA7 1378 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms