RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 EP400NLQ6ZTU2 488 aa12.1□□□□□ -0.47
PTCHD4-201ENST00000339488 TNPO1Q92973 898 aaKnown RBP12.1□□□□□ -0.47
PTCHD4-201ENST00000339488 TBC1D32Q96NH3 1257 aa12.09□□□□□ -0.47
PTCHD4-201ENST00000339488 C17orf53Q8N3J3 647 aaPredicted RBP12.09□□□□□ -0.47
PTCHD4-201ENST00000339488 SOX12O15370 315 aa12.08□□□□□ -0.47
PTCHD4-201ENST00000339488 CAPN2P17655 700 aa12.08□□□□□ -0.47
PTCHD4-201ENST00000339488 ISY1Q9ULR0 285 aaKnown RBP12.08□□□□□ -0.47
PTCHD4-201ENST00000339488 LRPPRCP42704 1394 aaKnown RBP12.08□□□□□ -0.48
PTCHD4-201ENST00000339488 ERICH4A6NGS2 130 aa12.08□□□□□ -0.48
PTCHD4-201ENST00000339488 HDAC5Q9UQL6 1122 aa12.08□□□□□ -0.48
PTCHD4-201ENST00000339488 UPF2Q9HAU5 1272 aaKnown RBP12.08□□□□□ -0.48
PTCHD4-201ENST00000339488 ZKSCAN5Q9Y2L8 839 aa12.08□□□□□ -0.48
PTCHD4-201ENST00000339488 SNAPC4Q5SXM2 1469 aa12.07□□□□□ -0.48
PTCHD4-201ENST00000339488 TAF3Q5VWG9 929 aa12.07□□□□□ -0.48
PTCHD4-201ENST00000339488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.07□□□□□ -0.48
PTCHD4-201ENST00000339488 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
PTCHD4-201ENST00000339488 MFAP1P55081 439 aaKnown RBP12.06□□□□□ -0.48
PTCHD4-201ENST00000339488 MYRIPQ8NFW9 859 aa12.06□□□□□ -0.48
PTCHD4-201ENST00000339488 GRIN2BQ13224 1484 aa12.06□□□□□ -0.48
PTCHD4-201ENST00000339488 UACAQ9BZF9 1416 aa12.05□□□□□ -0.48
PTCHD4-201ENST00000339488 RBSNQ9H1K0 784 aa12.05□□□□□ -0.48
PTCHD4-201ENST00000339488 PDCL2Q8N4E4 241 aa12.05□□□□□ -0.48
PTCHD4-201ENST00000339488 TMX1Q9H3N1 280 aa12.05□□□□□ -0.48
PTCHD4-201ENST00000339488 CARMIL1Q5VZK9 1371 aa12.05□□□□□ -0.48
PTCHD4-201ENST00000339488 APPP05067 770 aa12.04□□□□□ -0.48
PTCHD4-201ENST00000339488 DNAJC2Q99543 621 aaKnown RBP12.04□□□□□ -0.48
PTCHD4-201ENST00000339488 BCL2L12Q9HB09 334 aa12.04□□□□□ -0.48
PTCHD4-201ENST00000339488 ARHGAP35Q9NRY4 1499 aa12.04□□□□□ -0.48
PTCHD4-201ENST00000339488 CSPP1Q1MSJ5 1256 aa12.04□□□□□ -0.48
PTCHD4-201ENST00000339488 ADAMTS12P58397 1594 aa12.03□□□□□ -0.48
PTCHD4-201ENST00000339488 DDX49Q9Y6V7 483 aaKnown RBP12.03□□□□□ -0.48
PTCHD4-201ENST00000339488 LOC102724159A0A0B4J2E5 919 aa12.02□□□□□ -0.48
PTCHD4-201ENST00000339488 PWP2Q15269 919 aaKnown RBP12.02□□□□□ -0.48
PTCHD4-201ENST00000339488 NBPF1Q3BBV0 1214 aa12.02□□□□□ -0.48
PTCHD4-201ENST00000339488 PTPRKQ15262 1439 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 PDE3BQ13370 1112 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 CAVIN1Q6NZI2 390 aaKnown RBP12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 RRP7BPQ9NSQ0 103 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 LRRC9Q6ZRR7 1453 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 CUL7Q14999 1698 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 TIAM1Q13009 1591 aa12.02□□□□□ -0.49
PTCHD4-201ENST00000339488 TMED8Q6PL24 325 aaPredicted RBP12.01□□□□□ -0.49
PTCHD4-201ENST00000339488 RNF214Q8ND24 703 aa12.01□□□□□ -0.49
PTCHD4-201ENST00000339488 CHIC2Q9UKJ5 165 aa12.01□□□□□ -0.49
PTCHD4-201ENST00000339488 VIRMAQ69YN4 1812 aaKnown RBP12.01□□□□□ -0.49
PTCHD4-201ENST00000339488 HSCBQ8IWL3 235 aa12.01□□□□□ -0.49
PTCHD4-201ENST00000339488 PATL2C9JE40 543 aaKnown RBP12□□□□□ -0.49
PTCHD4-201ENST00000339488 PTMAP06454 111 aaKnown RBP12□□□□□ -0.49
PTCHD4-201ENST00000339488 SSFA2P28290 1259 aa12□□□□□ -0.49
PTCHD4-201ENST00000339488 PSEN1P49768 467 aa12□□□□□ -0.49
PTCHD4-201ENST00000339488 FBLN2P98095 1184 aa12□□□□□ -0.49
PTCHD4-201ENST00000339488 RBM27Q9P2N5 1060 aaKnown RBP12□□□□□ -0.49
PTCHD4-201ENST00000339488 MYBBP1AQ9BQG0 1328 aaKnown RBP12□□□□□ -0.49
PTCHD4-201ENST00000339488 PRIM1P49642 420 aaKnown RBP11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 GBP4Q96PP9 640 aa11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 BCAR3O75815 825 aa11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 TIGD1Q96MW7 591 aa11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 C22orf23Q9BZE7 217 aa11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 KIF3AQ9Y496 699 aa11.99□□□□□ -0.49
PTCHD4-201ENST00000339488 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.98□□□□□ -0.49
PTCHD4-201ENST00000339488 SPATA31E1Q6ZUB1 1445 aa11.98□□□□□ -0.49
PTCHD4-201ENST00000339488 PDLIM2Q96JY6 352 aa11.97□□□□□ -0.49
PTCHD4-201ENST00000339488 SLFN14P0C7P3 912 aa11.97□□□□□ -0.49
PTCHD4-201ENST00000339488 KIAA2012Q0VF49 1180 aa11.97□□□□□ -0.49
PTCHD4-201ENST00000339488 MAGI1Q96QZ7 1491 aaPredicted RBP11.97□□□□□ -0.49
PTCHD4-201ENST00000339488 BRD4O60885 1362 aaPredicted RBP11.97□□□□□ -0.49
PTCHD4-201ENST00000339488 VGFO15240 615 aaPredicted RBP11.96□□□□□ -0.49
PTCHD4-201ENST00000339488 HSP90AB1P08238 724 aaKnown RBP11.96□□□□□ -0.49
PTCHD4-201ENST00000339488 ZSCAN23Q3MJ62 389 aa11.96□□□□□ -0.49
PTCHD4-201ENST00000339488 HS1BP3Q53T59 392 aa11.96□□□□□ -0.5
PTCHD4-201ENST00000339488 CHAMP1Q96JM3 812 aa11.96□□□□□ -0.5
PTCHD4-201ENST00000339488 BCORL1Q5H9F3 1711 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 SKOR2Q2VWA4 1001 aaPredicted RBP11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 COG6Q9Y2V7 657 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 SYNJ2O15056 1496 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 CHD1O14646 1710 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 SLC20A2Q08357 652 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 PANK1Q8TE04 598 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 DENND4BO75064 1496 aaPredicted RBP11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 GRIN2AQ12879 1464 aa11.95□□□□□ -0.5
PTCHD4-201ENST00000339488 MAPK8IP3Q9UPT6 1336 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 RTEL1-TNFRSF6BF6WH68 1400 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 RAB3GAP1Q15042 981 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 PTPN23Q9H3S7 1636 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 FAM193AP78312 1265 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 CHMP7Q8WUX9 453 aaPredicted RBP11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 CCDC39Q9UFE4 941 aa11.94□□□□□ -0.5
PTCHD4-201ENST00000339488 DDIT3P35638 169 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 MCTP1Q6DN14 999 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 ST7Q9NRC1 585 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 CD2BP2O95400 341 aaKnown RBP11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 CC2D1BQ5T0F9 858 aaKnown RBP11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 DUSP27Q5VZP5 1158 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 TTC12Q9H892 705 aaPredicted RBP11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 NAIPQ13075 1403 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 KIF15Q9NS87 1388 aa11.93□□□□□ -0.5
PTCHD4-201ENST00000339488 USP47Q96K76 1375 aa11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 CCDC66A2RUB6 948 aa11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 TNNT3P45378 269 aaPredicted RBP11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 NAA30Q147X3 362 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms