RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 IFT172Q9UG01 1749 aa30.94■■■□□ 2.54
PDLIM2-203ENST00000339162 DISP3Q9P2K9 1392 aa30.94■■■□□ 2.54
PDLIM2-203ENST00000339162 AGLP35573 1532 aa30.94■■■□□ 2.54
PDLIM2-203ENST00000339162 NUTM2DQ5VT03 806 aaPredicted RBP30.92■■■□□ 2.54
PDLIM2-203ENST00000339162 ARHGEF40Q8TER5 1519 aa30.91■■■□□ 2.54
PDLIM2-203ENST00000339162 CCDC184Q52MB2 194 aa30.91■■■□□ 2.54
PDLIM2-203ENST00000339162 PIK3C2BO00750 1634 aa30.9■■■□□ 2.54
PDLIM2-203ENST00000339162 SCAF11Q99590 1463 aaKnown RBP30.89■■■□□ 2.54
PDLIM2-203ENST00000339162 IQGAP1P46940 1657 aa30.88■■■□□ 2.53
PDLIM2-203ENST00000339162 GTF3C3Q9Y5Q9 886 aa30.88■■■□□ 2.53
PDLIM2-203ENST00000339162 NRXN1Q9ULB1 1477 aa30.87■■■□□ 2.53
PDLIM2-203ENST00000339162 PREX1Q8TCU6 1659 aa30.86■■■□□ 2.53
PDLIM2-203ENST00000339162 TMF1P82094 1093 aa30.86■■■□□ 2.53
PDLIM2-203ENST00000339162 SLC52A1Q9NWF4 448 aa30.86■■■□□ 2.53
PDLIM2-203ENST00000339162 KIAA1210Q9ULL0 1709 aa30.85■■■□□ 2.53
PDLIM2-203ENST00000339162 PPLO60437 1756 aa30.85■■■□□ 2.53
PDLIM2-203ENST00000339162 TRHP20396 242 aaPredicted RBP30.85■■■□□ 2.53
PDLIM2-203ENST00000339162 RPGRIP1LQ68CZ1 1315 aa30.83■■■□□ 2.53
PDLIM2-203ENST00000339162 CLTCQ00610 1675 aaKnown RBP30.83■■■□□ 2.53
PDLIM2-203ENST00000339162 PPP6R1Q9UPN7 881 aa30.83■■■□□ 2.53
PDLIM2-203ENST00000339162 SENP3Q9H4L4 574 aaPredicted RBP30.82■■■□□ 2.52
PDLIM2-203ENST00000339162 PIK3C2GO75747 1445 aa30.8■■■□□ 2.52
PDLIM2-203ENST00000339162 ERVK-7P63135 1459 aa30.79■■■□□ 2.52
PDLIM2-203ENST00000339162 MRS2Q9HD23 443 aa30.77■■■□□ 2.52
PDLIM2-203ENST00000339162 TMEM132EQ6IEE7 984 aa30.77■■■□□ 2.52
PDLIM2-203ENST00000339162 C14orf93Q9H972 538 aaKnown RBP30.77■■■□□ 2.52
PDLIM2-203ENST00000339162 EIF3AQ14152 1382 aaKnown RBP30.77■■■□□ 2.52
PDLIM2-203ENST00000339162 NEXMIFQ5QGS0 1516 aa30.76■■■□□ 2.51
PDLIM2-203ENST00000339162 VGFO15240 615 aaPredicted RBP30.75■■■□□ 2.51
PDLIM2-203ENST00000339162 ESF1Q9H501 851 aaKnown RBP30.74■■■□□ 2.51
PDLIM2-203ENST00000339162 MYO5BQ9ULV0 1848 aa30.73■■■□□ 2.51
PDLIM2-203ENST00000339162 TRAK1Q9UPV9 953 aa30.71■■■□□ 2.51
PDLIM2-203ENST00000339162 TMEM131LA2VDJ0 1609 aa30.71■■■□□ 2.51
PDLIM2-203ENST00000339162 STAG3Q9UJ98 1225 aa30.71■■■□□ 2.51
PDLIM2-203ENST00000339162 PANK3Q9H999 370 aa30.7■■■□□ 2.51
PDLIM2-203ENST00000339162 FAM9BQ8IZU0 186 aa30.69■■■□□ 2.5
PDLIM2-203ENST00000339162 PER1O15534 1290 aaPredicted RBP30.68■■■□□ 2.5
PDLIM2-203ENST00000339162 ZMYM3Q14202 1370 aa30.67■■■□□ 2.5
PDLIM2-203ENST00000339162 SETBP1Q9Y6X0 1596 aa30.66■■■□□ 2.5
PDLIM2-203ENST00000339162 ADGRB1O14514 1584 aa30.66■■■□□ 2.5
PDLIM2-203ENST00000339162 HNRNPUQ00839 825 aaKnown RBP eCLIP30.64■■■□□ 2.5
PDLIM2-203ENST00000339162 SPATA31D1Q6ZQQ2 1576 aa30.63■■■□□ 2.49
PDLIM2-203ENST00000339162 CDCA8Q53HL2 280 aa30.62■■■□□ 2.49
PDLIM2-203ENST00000339162 CENPJQ9HC77 1338 aaPredicted RBP30.61■■■□□ 2.49
PDLIM2-203ENST00000339162 ZFYVE9O95405 1425 aa30.59■■■□□ 2.49
PDLIM2-203ENST00000339162 CC2D1BQ5T0F9 858 aaKnown RBP30.58■■■□□ 2.49
PDLIM2-203ENST00000339162 RALBP1Q15311 655 aa30.56■■■□□ 2.48
PDLIM2-203ENST00000339162 KTN1Q86UP2 1357 aaKnown RBP30.55■■■□□ 2.48
PDLIM2-203ENST00000339162 A2ML1A8K2U0 1454 aa30.55■■■□□ 2.48
PDLIM2-203ENST00000339162 STK26Q9P289 416 aa30.54■■■□□ 2.48
PDLIM2-203ENST00000339162 MYO3AQ8NEV4 1616 aa30.53■■■□□ 2.48
PDLIM2-203ENST00000339162 MYBBP1AQ9BQG0 1328 aaKnown RBP30.53■■■□□ 2.48
PDLIM2-203ENST00000339162 TMC1Q8TDI8 760 aa30.52■■■□□ 2.48
PDLIM2-203ENST00000339162 PARD3Q8TEW0 1356 aa30.51■■■□□ 2.47
PDLIM2-203ENST00000339162 KDM5AP29375 1690 aaKnown RBP30.5■■■□□ 2.47
PDLIM2-203ENST00000339162 SLC24A1O60721 1099 aa30.5■■■□□ 2.47
PDLIM2-203ENST00000339162 SBNO2Q9Y2G9 1366 aa30.49■■■□□ 2.47
PDLIM2-203ENST00000339162 CEBPAP49715 358 aaPredicted RBP30.49■■■□□ 2.47
PDLIM2-203ENST00000339162 SAFB2Q14151 953 aaKnown RBP eCLIP30.49■■■□□ 2.47
PDLIM2-203ENST00000339162 ASXL1Q8IXJ9 1541 aa30.48■■■□□ 2.47
PDLIM2-203ENST00000339162 MYOM1P52179 1685 aa30.48■■■□□ 2.47
PDLIM2-203ENST00000339162 PLPPR3Q6T4P5 718 aa30.47■■■□□ 2.47
PDLIM2-203ENST00000339162 KNSTRNQ9Y448 316 aa30.47■■■□□ 2.47
PDLIM2-203ENST00000339162 QRICH2Q9H0J4 1663 aa30.47■■■□□ 2.47
PDLIM2-203ENST00000339162 RIMS2Q9UQ26 1411 aa30.47■■■□□ 2.47
PDLIM2-203ENST00000339162 TNRQ92752 1358 aa30.46■■■□□ 2.47
PDLIM2-203ENST00000339162 DNAJC5Q9H3Z4 198 aa30.45■■■□□ 2.47
PDLIM2-203ENST00000339162 PNISRQ8TF01 805 aaKnown RBP30.43■■■□□ 2.46
PDLIM2-203ENST00000339162 ARHGEF28Q8N1W1 1705 aaKnown RBP30.42■■■□□ 2.46
PDLIM2-203ENST00000339162 BRD4O60885 1362 aaPredicted RBP30.42■■■□□ 2.46
PDLIM2-203ENST00000339162 ALKQ9UM73 1620 aa30.41■■■□□ 2.46
PDLIM2-203ENST00000339162 NLRP13Q86W25 1043 aa30.4■■■□□ 2.46
PDLIM2-203ENST00000339162 PELP1Q8IZL8 1130 aaKnown RBP30.4■■■□□ 2.46
PDLIM2-203ENST00000339162 AMER1Q5JTC6 1135 aaPredicted RBP30.39■■■□□ 2.46
PDLIM2-203ENST00000339162 YTHDC2Q9H6S0 1430 aaKnown RBP30.37■■■□□ 2.45
PDLIM2-203ENST00000339162 SENP3-EIF4A1A0A087X0R7 540 aa30.37■■■□□ 2.45
PDLIM2-203ENST00000339162 PRAM1Q96QH2 718 aa30.35■■■□□ 2.45
PDLIM2-203ENST00000339162 CARD14Q9BXL6 1004 aa30.35■■■□□ 2.45
PDLIM2-203ENST00000339162 SLC12A5Q9H2X9 1139 aa30.35■■■□□ 2.45
PDLIM2-203ENST00000339162 EVC2Q86UK5 1308 aa30.32■■■□□ 2.44
PDLIM2-203ENST00000339162 PTPRMP28827 1452 aa30.32■■■□□ 2.44
PDLIM2-203ENST00000339162 POGKQ9P215 609 aa30.32■■■□□ 2.44
PDLIM2-203ENST00000339162 CABP2Q9NPB3 220 aa30.31■■■□□ 2.44
PDLIM2-203ENST00000339162 TULP4Q9NRJ4 1543 aa30.31■■■□□ 2.44
PDLIM2-203ENST00000339162 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.31■■■□□ 2.44
PDLIM2-203ENST00000339162 MINK1Q8N4C8 1332 aaPredicted RBP30.3■■■□□ 2.44
PDLIM2-203ENST00000339162 ZBED9Q6R2W3 1325 aa30.28■■■□□ 2.44
PDLIM2-203ENST00000339162 BCANQ96GW7 911 aa30.28■■■□□ 2.44
PDLIM2-203ENST00000339162 C3P01024 1663 aa30.27■■■□□ 2.44
PDLIM2-203ENST00000339162 UBR1Q8IWV7 1749 aa30.27■■■□□ 2.44
PDLIM2-203ENST00000339162 TMEM2Q9UHN6 1383 aa30.27■■■□□ 2.44
PDLIM2-203ENST00000339162 FER1L4A9Z1Z3 1794 aa30.27■■■□□ 2.44
PDLIM2-203ENST00000339162 LRPPRCP42704 1394 aaKnown RBP30.26■■■□□ 2.43
PDLIM2-203ENST00000339162 PPP2R1AP30153 589 aa30.25■■■□□ 2.43
PDLIM2-203ENST00000339162 HDGFP51858 240 aaKnown RBP30.24■■■□□ 2.43
PDLIM2-203ENST00000339162 SRPK2P78362 688 aaKnown RBP30.24■■■□□ 2.43
PDLIM2-203ENST00000339162 WAPLQ7Z5K2 1190 aa30.24■■■□□ 2.43
PDLIM2-203ENST00000339162 NRXN3Q9Y4C0 1643 aa30.24■■■□□ 2.43
PDLIM2-203ENST00000339162 METP08581 1390 aa30.23■■■□□ 2.43
PDLIM2-203ENST00000339162 SETD1AO15047 1707 aaKnown RBP30.22■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms