RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CCER1Q8TC90 406 aaPredicted RBP17.28■□□□□ 0.36
SPTLC1-202ENST00000337841 ZNF142P52746 1687 aaPredicted RBP17.28■□□□□ 0.36
SPTLC1-202ENST00000337841 SIN3AQ96ST3 1273 aa17.27■□□□□ 0.36
SPTLC1-202ENST00000337841 RIMS2Q9UQ26 1411 aa17.27■□□□□ 0.35
SPTLC1-202ENST00000337841 NUTM2DQ5VT03 806 aaPredicted RBP17.26■□□□□ 0.35
SPTLC1-202ENST00000337841 CLTCL1P53675 1640 aa17.25■□□□□ 0.35
SPTLC1-202ENST00000337841 TMEM131LA2VDJ0 1609 aa17.25■□□□□ 0.35
SPTLC1-202ENST00000337841 ARHGAP23Q9P227 1491 aa17.24■□□□□ 0.35
SPTLC1-202ENST00000337841 UBR1Q8IWV7 1749 aa17.24■□□□□ 0.35
SPTLC1-202ENST00000337841 STAC3Q96MF2 364 aa17.24■□□□□ 0.35
SPTLC1-202ENST00000337841 SLIT1O75093 1534 aa17.24■□□□□ 0.35
SPTLC1-202ENST00000337841 KDM5AP29375 1690 aaKnown RBP17.23■□□□□ 0.35
SPTLC1-202ENST00000337841 SPATA31E1Q6ZUB1 1445 aa17.23■□□□□ 0.35
SPTLC1-202ENST00000337841 SCAF11Q99590 1463 aaKnown RBP17.23■□□□□ 0.35
SPTLC1-202ENST00000337841 CLSPNQ9HAW4 1339 aa17.22■□□□□ 0.35
SPTLC1-202ENST00000337841 DCAF11Q8TEB1 546 aa17.21■□□□□ 0.35
SPTLC1-202ENST00000337841 NPHP4O75161 1426 aaPredicted RBP17.21■□□□□ 0.34
SPTLC1-202ENST00000337841 ZFYVE9O95405 1425 aa17.21■□□□□ 0.34
SPTLC1-202ENST00000337841 KDM2AQ9Y2K7 1162 aa17.2■□□□□ 0.34
SPTLC1-202ENST00000337841 MED14O60244 1454 aa17.18■□□□□ 0.34
SPTLC1-202ENST00000337841 PLEKHG1Q9ULL1 1385 aa17.18■□□□□ 0.34
SPTLC1-202ENST00000337841 SLC26A8Q96RN1 970 aa17.18■□□□□ 0.34
SPTLC1-202ENST00000337841 TBX22Q9Y458 520 aa17.18■□□□□ 0.34
SPTLC1-202ENST00000337841 KIF1BO60333 1816 aa17.18■□□□□ 0.34
SPTLC1-202ENST00000337841 NEURL4Q96JN8 1562 aa17.16■□□□□ 0.34
SPTLC1-202ENST00000337841 L3MBTL2Q969R5 705 aa17.16■□□□□ 0.34
SPTLC1-202ENST00000337841 ADGRF5Q8IZF2 1346 aa17.16■□□□□ 0.34
SPTLC1-202ENST00000337841 STRCQ7RTU9 1775 aa17.13■□□□□ 0.33
SPTLC1-202ENST00000337841 TIMELESSQ9UNS1 1208 aa17.13■□□□□ 0.33
SPTLC1-202ENST00000337841 TONSLQ96HA7 1378 aa17.13■□□□□ 0.33
SPTLC1-202ENST00000337841 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
SPTLC1-202ENST00000337841 MYO5BQ9ULV0 1848 aa17.1■□□□□ 0.33
SPTLC1-202ENST00000337841 C14orf93Q9H972 538 aaKnown RBP17.1■□□□□ 0.33
SPTLC1-202ENST00000337841 KCNA6P17658 529 aa17.09■□□□□ 0.33
SPTLC1-202ENST00000337841 ADAMTS13Q76LX8 1427 aa17.07■□□□□ 0.32
SPTLC1-202ENST00000337841 ZNF335Q9H4Z2 1342 aaPredicted RBP17.07■□□□□ 0.32
SPTLC1-202ENST00000337841 CFAP70Q5T0N1 1121 aa17.07■□□□□ 0.32
SPTLC1-202ENST00000337841 POLR1AO95602 1720 aaPredicted RBP17.07■□□□□ 0.32
SPTLC1-202ENST00000337841 PIK3R4Q99570 1358 aa17.06■□□□□ 0.32
SPTLC1-202ENST00000337841 IQGAP1P46940 1657 aa17.06■□□□□ 0.32
SPTLC1-202ENST00000337841 MYOM2P54296 1465 aa17.05■□□□□ 0.32
SPTLC1-202ENST00000337841 AMOTL2Q9Y2J4 779 aa17.05■□□□□ 0.32
SPTLC1-202ENST00000337841 TMEM132EQ6IEE7 984 aa17.03■□□□□ 0.32
SPTLC1-202ENST00000337841 PROSER2Q86WR7 435 aaPredicted RBP17.03■□□□□ 0.32
SPTLC1-202ENST00000337841 PIK3C2GO75747 1445 aa17.03■□□□□ 0.32
SPTLC1-202ENST00000337841 METP08581 1390 aa17.02■□□□□ 0.32
SPTLC1-202ENST00000337841 SETBP1Q9Y6X0 1596 aa17.02■□□□□ 0.32
SPTLC1-202ENST00000337841 PPLO60437 1756 aa17.02■□□□□ 0.32
SPTLC1-202ENST00000337841 NRXN1Q9ULB1 1477 aa17.02■□□□□ 0.32
SPTLC1-202ENST00000337841 STK26Q9P289 416 aa17.01■□□□□ 0.31
SPTLC1-202ENST00000337841 DIP2AQ14689 1571 aa17■□□□□ 0.31
SPTLC1-202ENST00000337841 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
SPTLC1-202ENST00000337841 PRAG1Q86YV5 1406 aa16.98■□□□□ 0.31
SPTLC1-202ENST00000337841 NBPF8Q3BBV2 869 aa16.98■□□□□ 0.31
SPTLC1-202ENST00000337841 CERKQ8TCT0 537 aa16.98■□□□□ 0.31
SPTLC1-202ENST00000337841 IFT172Q9UG01 1749 aa16.96■□□□□ 0.31
SPTLC1-202ENST00000337841 NBPF1Q3BBV0 1214 aa16.96■□□□□ 0.31
SPTLC1-202ENST00000337841 SIRT1Q96EB6 747 aa16.96■□□□□ 0.31
SPTLC1-202ENST00000337841 LRPPRCP42704 1394 aaKnown RBP16.96■□□□□ 0.31
SPTLC1-202ENST00000337841 PTPRUQ92729 1446 aa16.96■□□□□ 0.3
SPTLC1-202ENST00000337841 ABCC11Q96J66 1382 aa16.95■□□□□ 0.3
SPTLC1-202ENST00000337841 C14orf37Q86TY3 774 aa16.94■□□□□ 0.3
SPTLC1-202ENST00000337841 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
SPTLC1-202ENST00000337841 NRXN3Q9Y4C0 1643 aa16.94■□□□□ 0.3
SPTLC1-202ENST00000337841 CPS1P31327 1500 aa16.94■□□□□ 0.3
SPTLC1-202ENST00000337841 YTHDC2Q9H6S0 1430 aaKnown RBP16.93■□□□□ 0.3
SPTLC1-202ENST00000337841 RBM33Q96EV2 1170 aaKnown RBP16.92■□□□□ 0.3
SPTLC1-202ENST00000337841 POGKQ9P215 609 aa16.92■□□□□ 0.3
SPTLC1-202ENST00000337841 LTBP4Q8N2S1 1624 aa16.92■□□□□ 0.3
SPTLC1-202ENST00000337841 TMEM94Q12767 1356 aa16.91■□□□□ 0.3
SPTLC1-202ENST00000337841 CARD11Q9BXL7 1154 aa16.91■□□□□ 0.3
SPTLC1-202ENST00000337841 ROCK2O75116 1388 aaKnown RBP16.9■□□□□ 0.3
SPTLC1-202ENST00000337841 WAPLQ7Z5K2 1190 aa16.9■□□□□ 0.3
SPTLC1-202ENST00000337841 NKTRP30414 1462 aaKnown RBP16.9■□□□□ 0.3
SPTLC1-202ENST00000337841 NCOA3Q9Y6Q9 1424 aa16.89■□□□□ 0.29
SPTLC1-202ENST00000337841 C19orf44Q9H6X5 657 aa16.89■□□□□ 0.29
SPTLC1-202ENST00000337841 LRRC7Q96NW7 1537 aa16.89■□□□□ 0.29
SPTLC1-202ENST00000337841 ROBO2Q9HCK4 1378 aa16.89■□□□□ 0.29
SPTLC1-202ENST00000337841 PRAM1Q96QH2 718 aa16.88■□□□□ 0.29
SPTLC1-202ENST00000337841 LAMC1P11047 1609 aa16.88■□□□□ 0.29
SPTLC1-202ENST00000337841 CHD2O14647 1828 aaKnown RBP16.87■□□□□ 0.29
SPTLC1-202ENST00000337841 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 TOM1O60784 492 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 ATF3P18847 181 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 TECPR2O15040 1411 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 PTCH1Q13635 1447 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 FAM135BQ49AJ0 1406 aa16.86■□□□□ 0.29
SPTLC1-202ENST00000337841 SAFB2Q14151 953 aaKnown RBP eCLIP16.85■□□□□ 0.29
SPTLC1-202ENST00000337841 MSH6P52701 1360 aa16.85■□□□□ 0.29
SPTLC1-202ENST00000337841 ADGRB1O14514 1584 aa16.85■□□□□ 0.29
SPTLC1-202ENST00000337841 CADPS2Q86UW7 1296 aa16.84■□□□□ 0.29
SPTLC1-202ENST00000337841 GPRASP1Q5JY77 1395 aa16.84■□□□□ 0.29
SPTLC1-202ENST00000337841 ASXL1Q8IXJ9 1541 aa16.84■□□□□ 0.29
SPTLC1-202ENST00000337841 UBAP1LF5GYI3 381 aa16.83■□□□□ 0.28
SPTLC1-202ENST00000337841 SETD1AO15047 1707 aaKnown RBP16.83■□□□□ 0.28
SPTLC1-202ENST00000337841 IQSEC2Q5JU85 1478 aa16.83■□□□□ 0.28
SPTLC1-202ENST00000337841 KIAA1210Q9ULL0 1709 aa16.83■□□□□ 0.28
SPTLC1-202ENST00000337841 RALGAPBQ86X10 1494 aa16.82■□□□□ 0.28
SPTLC1-202ENST00000337841 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
SPTLC1-202ENST00000337841 STRCP1A6NGW2 1772 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms