RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ABCA10Q8WWZ4 1543 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 DDX49Q9Y6V7 483 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 PDE3AQ14432 1141 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 DZIP1LQ8IYY4 767 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 C9orf84Q5VXU9 1444 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 IL27Q8NEV9 243 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 TOPBP1Q92547 1522 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 IFT140Q96RY7 1462 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 ZBTB7CA1YPR0 619 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 CRBNQ96SW2 442 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 INTS3Q68E01 1043 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 CLUAP1Q96AJ1 413 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 KIF3BO15066 747 aa12.61□□□□□ -0.39
CCDC88A-202ENST00000336838 NESP48681 1621 aa12.6□□□□□ -0.39
CCDC88A-202ENST00000336838 HOOK1Q9UJC3 728 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-202ENST00000336838 GOLGA6L19H0YKK7 550 aa12.6□□□□□ -0.39
CCDC88A-202ENST00000336838 HNRNPMP52272 730 aaKnown RBP eCLIP12.6□□□□□ -0.39
CCDC88A-202ENST00000336838 TROQ12816 1431 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 EXOC6Q8TAG9 804 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 TPM2P07951 284 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 HSP90AB4PQ58FF6 505 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 CCDC70Q6NSX1 233 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 MBD3O95983 291 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 ZKSCAN1P17029 563 aaPredicted RBP12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
CCDC88A-202ENST00000336838 TPM1P09493 284 aa12.58□□□□□ -0.39
CCDC88A-202ENST00000336838 ZNF428Q96B54 188 aa12.58□□□□□ -0.4
CCDC88A-202ENST00000336838 MRC2Q9UBG0 1479 aa12.58□□□□□ -0.4
CCDC88A-202ENST00000336838 EID1Q9Y6B2 187 aa12.58□□□□□ -0.4
CCDC88A-202ENST00000336838 TNNT3P45378 269 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-202ENST00000336838 GNAI1P63096 354 aa12.57□□□□□ -0.4
CCDC88A-202ENST00000336838 EPRSP07814 1512 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-202ENST00000336838 FAM43AQ8N2R8 423 aa12.57□□□□□ -0.4
CCDC88A-202ENST00000336838 HMGN5P82970 282 aaKnown RBP12.57□□□□□ -0.4
CCDC88A-202ENST00000336838 CCDC39Q9UFE4 941 aa12.57□□□□□ -0.4
CCDC88A-202ENST00000336838 GGT6Q6P531 493 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 SENP3-EIF4A1A0A087X0R7 540 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 HSP90B1P14625 803 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 TEX35Q5T0J7 233 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 COG3Q96JB2 828 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 CCDC146Q8IYE0 955 aa12.56□□□□□ -0.4
CCDC88A-202ENST00000336838 SETQ01105 290 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-202ENST00000336838 C22orf23Q9BZE7 217 aa12.55□□□□□ -0.4
CCDC88A-202ENST00000336838 DIAPH3Q9NSV4 1193 aa12.55□□□□□ -0.4
CCDC88A-202ENST00000336838 ANKRD45Q5TZF3 282 aa12.55□□□□□ -0.4
CCDC88A-202ENST00000336838 TSR1Q2NL82 804 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 NAT10Q9H0A0 1025 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 FAM135AQ9P2D6 1515 aa12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 H3BQV1 296 aa12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 IFFO2Q5TF58 517 aa12.54□□□□□ -0.4
CCDC88A-202ENST00000336838 CCP110O43303 1012 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 RABEP1Q15276 862 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 TPRNQ4KMQ1 711 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 NOC3LQ8WTT2 800 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 STK26Q9P289 416 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 ERC2O15083 957 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 PDCP20941 246 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 NFKBIBQ15653 356 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 CPLX2Q6PUV4 134 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 NAIPQ13075 1403 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 ADGBQ8N7X0 1667 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 CDC45O75419 566 aa12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 DIAPH1O60610 1272 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-202ENST00000336838 BECN2A8MW95 431 aa12.52□□□□□ -0.4
CCDC88A-202ENST00000336838 GORABQ5T7V8 394 aa12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 CWC22Q9HCG8 908 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 ERBINQ96RT1 1412 aa12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 NPHP1O15259 732 aa12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 CCDC173Q0VFZ6 552 aa12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-202ENST00000336838 ANKRD20A12PQ8NF67 263 aa12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 ARGLU1Q9NWB6 273 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 DHX29Q7Z478 1369 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 NASPP49321 788 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 PLPPR3Q6T4P5 718 aa12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 GCC1Q96CN9 775 aa12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 NEXNQ0ZGT2 675 aa12.51□□□□□ -0.41
CCDC88A-202ENST00000336838 HIP1O00291 1037 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 SF3A1Q15459 793 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 WDR63Q8IWG1 891 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 AMPHP49418 695 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 ACBD3Q9H3P7 528 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 SAFB2Q14151 953 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 COG6Q9Y2V7 657 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 ANKRD30BQ9BXX2 1392 aa12.5□□□□□ -0.41
CCDC88A-202ENST00000336838 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 APBB1O00213 710 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 CAMSAP2Q08AD1 1489 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 APAF1O14727 1248 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 BACH2Q9BYV9 841 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 GCC2Q8IWJ2 1684 aa12.49□□□□□ -0.41
CCDC88A-202ENST00000336838 KIAA0586Q9BVV6 1533 aa12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 CAVIN1Q6NZI2 390 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 RPRD2Q5VT52 1461 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 LMOD2Q6P5Q4 547 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms