RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CFAP53Q96M91 514 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 PTPRGP23470 1445 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 MTERF4Q7Z6M4 381 aaKnown RBP8.05□□□□□ -1.12
VPS35-201ENST00000299138 STK11IPQ8N1F8 1099 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 CIZ1Q9ULV3 898 aaPredicted RBP8.05□□□□□ -1.12
VPS35-201ENST00000299138 KIAA2012Q0VF49 1180 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 RWDD1Q9H446 243 aaPredicted RBP8.05□□□□□ -1.12
VPS35-201ENST00000299138 KIF16BQ96L93 1317 aa8.04□□□□□ -1.12
VPS35-201ENST00000299138 BLMP54132 1417 aaPredicted RBP8.04□□□□□ -1.12
VPS35-201ENST00000299138 PIK3C2GO75747 1445 aa8.03□□□□□ -1.12
VPS35-201ENST00000299138 NBPF8Q3BBV2 869 aa8.03□□□□□ -1.12
VPS35-201ENST00000299138 PUS7Q96PZ0 661 aaKnown RBP8.03□□□□□ -1.12
VPS35-201ENST00000299138 MAGI1Q96QZ7 1491 aaPredicted RBP8.02□□□□□ -1.12
VPS35-201ENST00000299138 ZNF428Q96B54 188 aa8.02□□□□□ -1.13
VPS35-201ENST00000299138 GBP4Q96PP9 640 aa8.02□□□□□ -1.13
VPS35-201ENST00000299138 UBE2Q2Q8WVN8 375 aa8.02□□□□□ -1.13
VPS35-201ENST00000299138 C9orf84Q5VXU9 1444 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 GOLGA6L4A6NEF3 574 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 ATP10AO60312 1499 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 SENP3-EIF4A1A0A087X0R7 540 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 NFKBIBQ15653 356 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 KANK1Q14678 1352 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 MRE11P49959 708 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 CASC1Q6TDU7 716 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 PZPP20742 1482 aa8.01□□□□□ -1.13
VPS35-201ENST00000299138 NAP1L2Q9ULW6 460 aaPredicted RBP8□□□□□ -1.13
VPS35-201ENST00000299138 GOLGA6L3A6NEY3 463 aa8□□□□□ -1.13
VPS35-201ENST00000299138 EXOC6Q8TAG9 804 aa8□□□□□ -1.13
VPS35-201ENST00000299138 RRP12Q5JTH9 1297 aaKnown RBP7.99□□□□□ -1.13
VPS35-201ENST00000299138 ANO8Q9HCE9 1232 aaPredicted RBP7.99□□□□□ -1.13
VPS35-201ENST00000299138 CHMP5Q9NZZ3 219 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 LAMC1P11047 1609 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 COL17A1Q9UMD9 1497 aaPredicted RBP7.99□□□□□ -1.13
VPS35-201ENST00000299138 ARHGEF5Q12774 1597 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 ST20-MTHFSA0A0A6YYL1 179 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 ADAMTS12P58397 1594 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 RGS3P49796 1198 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 TERF1P54274 439 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 ZNF526Q8TF50 670 aaPredicted RBP7.99□□□□□ -1.13
VPS35-201ENST00000299138 TPM2P07951 284 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 SYNJ2O15056 1496 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 CLASP1Q7Z460 1538 aa7.99□□□□□ -1.13
VPS35-201ENST00000299138 RRP9O43818 475 aaKnown RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 MAPK8IP2Q13387 824 aaPredicted RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 IPO8O15397 1037 aaKnown RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 CALD1Q05682 793 aaKnown RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 DCAF11Q8TEB1 546 aa7.98□□□□□ -1.13
VPS35-201ENST00000299138 PLCD4Q9BRC7 762 aa7.98□□□□□ -1.13
VPS35-201ENST00000299138 POLR1AO95602 1720 aaPredicted RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 ZNF608Q9ULD9 1512 aaPredicted RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 GPATCH8Q9UKJ3 1502 aaKnown RBP7.98□□□□□ -1.13
VPS35-201ENST00000299138 PAK3O75914 559 aaPredicted RBP7.97□□□□□ -1.13
VPS35-201ENST00000299138 CENPJQ9HC77 1338 aaPredicted RBP7.97□□□□□ -1.13
VPS35-201ENST00000299138 ERBINQ96RT1 1412 aa7.97□□□□□ -1.13
VPS35-201ENST00000299138 NSD2O96028 1365 aa7.97□□□□□ -1.13
VPS35-201ENST00000299138 HSCBQ8IWL3 235 aa7.97□□□□□ -1.13
VPS35-201ENST00000299138 SBNO2Q9Y2G9 1366 aa7.96□□□□□ -1.13
VPS35-201ENST00000299138 GRIN2AQ12879 1464 aa7.96□□□□□ -1.13
VPS35-201ENST00000299138 PRAG1Q86YV5 1406 aa7.96□□□□□ -1.13
VPS35-201ENST00000299138 NUP153P49790 1475 aaKnown RBP7.96□□□□□ -1.14
VPS35-201ENST00000299138 RAPGEF6Q8TEU7 1601 aa7.96□□□□□ -1.14
VPS35-201ENST00000299138 KDM5CP41229 1560 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 WDR63Q8IWG1 891 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 KIAA0556O60303 1618 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 FGD1P98174 961 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 ABCC2Q92887 1545 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 ADGBQ8N7X0 1667 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 NKTRP30414 1462 aaKnown RBP7.95□□□□□ -1.14
VPS35-201ENST00000299138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS35-201ENST00000299138 ABCC11Q96J66 1382 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 HS1BP3Q53T59 392 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 EFCAB2Q5VUJ9 269 aa7.95□□□□□ -1.14
VPS35-201ENST00000299138 CLUAP1Q96AJ1 413 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 FAM13BQ9NYF5 915 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 KDM2BQ8NHM5 1336 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 A0A0G2JS52 829 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 ADCY10Q96PN6 1610 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 CSPP1Q1MSJ5 1256 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 HSP90AB3PQ58FF7 597 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 CCDC27Q2M243 656 aa7.94□□□□□ -1.14
VPS35-201ENST00000299138 CLCN1P35523 988 aa7.93□□□□□ -1.14
VPS35-201ENST00000299138 MCM5P33992 734 aa7.93□□□□□ -1.14
VPS35-201ENST00000299138 CRBNQ96SW2 442 aa7.93□□□□□ -1.14
VPS35-201ENST00000299138 PRG4Q92954 1404 aaPredicted RBP7.93□□□□□ -1.14
VPS35-201ENST00000299138 CCAR2Q8N163 923 aaKnown RBP7.93□□□□□ -1.14
VPS35-201ENST00000299138 SCAF11Q99590 1463 aaKnown RBP7.93□□□□□ -1.14
VPS35-201ENST00000299138 SLFN5Q08AF3 891 aa7.92□□□□□ -1.14
VPS35-201ENST00000299138 POLR3AO14802 1390 aaPredicted RBP7.92□□□□□ -1.14
VPS35-201ENST00000299138 DENND4BO75064 1496 aaPredicted RBP7.92□□□□□ -1.14
VPS35-201ENST00000299138 CHMP4AQ9BY43 222 aa7.92□□□□□ -1.14
VPS35-201ENST00000299138 PDIA4P13667 645 aaKnown RBP7.92□□□□□ -1.14
VPS35-201ENST00000299138 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.92□□□□□ -1.14
VPS35-201ENST00000299138 NOM1Q5C9Z4 860 aaKnown RBP7.92□□□□□ -1.14
VPS35-201ENST00000299138 DDX19BQ9UMR2 479 aa7.92□□□□□ -1.14
VPS35-201ENST00000299138 PER1O15534 1290 aaPredicted RBP7.91□□□□□ -1.14
VPS35-201ENST00000299138 CEP170Q5SW79 1584 aa7.91□□□□□ -1.14
VPS35-201ENST00000299138 RPGRIP1LQ68CZ1 1315 aa7.91□□□□□ -1.14
VPS35-201ENST00000299138 EIF4G3O43432 1585 aaKnown RBP7.91□□□□□ -1.14
VPS35-201ENST00000299138 CCDC184Q52MB2 194 aa7.91□□□□□ -1.14
VPS35-201ENST00000299138 NEURL4Q96JN8 1562 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms