RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 UNC13BO14795 1591 aa15.77■□□□□ 0.12
SYNGAP1-201ENST00000293748 MIER1Q8N108 512 aa15.77■□□□□ 0.11
SYNGAP1-201ENST00000293748 EFCAB6Q5THR3 1501 aa15.77■□□□□ 0.11
SYNGAP1-201ENST00000293748 UGGT1Q9NYU2 1555 aa15.77■□□□□ 0.11
SYNGAP1-201ENST00000293748 TET3O43151 1660 aa15.76■□□□□ 0.11
SYNGAP1-201ENST00000293748 CAMSAP1Q5T5Y3 1602 aa15.76■□□□□ 0.11
SYNGAP1-201ENST00000293748 SENP3Q9H4L4 574 aaPredicted RBP15.75■□□□□ 0.11
SYNGAP1-201ENST00000293748 KDM2AQ9Y2K7 1162 aa15.75■□□□□ 0.11
SYNGAP1-201ENST00000293748 NCKAP5LQ9HCH0 1330 aa15.75■□□□□ 0.11
SYNGAP1-201ENST00000293748 BCL11AQ9H165 835 aa15.75■□□□□ 0.11
SYNGAP1-201ENST00000293748 ANP32EQ9BTT0 268 aa15.73■□□□□ 0.11
SYNGAP1-201ENST00000293748 IQGAP3Q86VI3 1631 aa15.73■□□□□ 0.11
SYNGAP1-201ENST00000293748 CEP152O94986 1710 aa15.73■□□□□ 0.11
SYNGAP1-201ENST00000293748 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.72■□□□□ 0.11
SYNGAP1-201ENST00000293748 NUTM2DQ5VT03 806 aaPredicted RBP15.72■□□□□ 0.11
SYNGAP1-201ENST00000293748 NOS1P29475 1434 aa15.71■□□□□ 0.11
SYNGAP1-201ENST00000293748 DEPDC5O75140 1603 aa15.71■□□□□ 0.11
SYNGAP1-201ENST00000293748 TMEM2Q9UHN6 1383 aa15.71■□□□□ 0.11
SYNGAP1-201ENST00000293748 RIMS2Q9UQ26 1411 aa15.71■□□□□ 0.1
SYNGAP1-201ENST00000293748 C3P01024 1663 aa15.71■□□□□ 0.1
SYNGAP1-201ENST00000293748 ANKRD30BQ9BXX2 1392 aa15.7■□□□□ 0.1
SYNGAP1-201ENST00000293748 CEP170BQ9Y4F5 1589 aaPredicted RBP15.7■□□□□ 0.1
SYNGAP1-201ENST00000293748 DCAF11Q8TEB1 546 aa15.7■□□□□ 0.1
SYNGAP1-201ENST00000293748 SPATA31D1Q6ZQQ2 1576 aa15.7■□□□□ 0.1
SYNGAP1-201ENST00000293748 PREX1Q8TCU6 1659 aa15.69■□□□□ 0.1
SYNGAP1-201ENST00000293748 TMC1Q8TDI8 760 aa15.69■□□□□ 0.1
SYNGAP1-201ENST00000293748 VWDEQ8N2E2 1590 aa15.68■□□□□ 0.1
SYNGAP1-201ENST00000293748 NPHP4O75161 1426 aaPredicted RBP15.67■□□□□ 0.1
SYNGAP1-201ENST00000293748 PLA2R1Q13018 1463 aa15.67■□□□□ 0.1
SYNGAP1-201ENST00000293748 MRS2Q9HD23 443 aa15.67■□□□□ 0.1
SYNGAP1-201ENST00000293748 SCAF11Q99590 1463 aaKnown RBP15.66■□□□□ 0.1
SYNGAP1-201ENST00000293748 MROH1Q8NDA8 1641 aa15.66■□□□□ 0.1
SYNGAP1-201ENST00000293748 PROSER2Q86WR7 435 aaPredicted RBP15.66■□□□□ 0.1
SYNGAP1-201ENST00000293748 SLC26A8Q96RN1 970 aa15.66■□□□□ 0.1
SYNGAP1-201ENST00000293748 CFAP65Q6ZU64 1925 aaKnown RBP15.64■□□□□ 0.09
SYNGAP1-201ENST00000293748 POGKQ9P215 609 aa15.64■□□□□ 0.09
SYNGAP1-201ENST00000293748 PTPRTO14522 1441 aa15.64■□□□□ 0.09
SYNGAP1-201ENST00000293748 LMTK3Q96Q04 1460 aa15.63■□□□□ 0.09
SYNGAP1-201ENST00000293748 SLC24A1O60721 1099 aa15.63■□□□□ 0.09
SYNGAP1-201ENST00000293748 DDRGK1Q96HY6 314 aa15.62■□□□□ 0.09
SYNGAP1-201ENST00000293748 SIGLEC1Q9BZZ2 1709 aa15.62■□□□□ 0.09
SYNGAP1-201ENST00000293748 ADGRB3O60242 1522 aa15.62■□□□□ 0.09
SYNGAP1-201ENST00000293748 TRPM2O94759 1503 aa15.62■□□□□ 0.09
SYNGAP1-201ENST00000293748 MYO3AQ8NEV4 1616 aa15.62■□□□□ 0.09
SYNGAP1-201ENST00000293748 TBX22Q9Y458 520 aa15.61■□□□□ 0.09
SYNGAP1-201ENST00000293748 DHX57Q6P158 1386 aaKnown RBP15.59■□□□□ 0.09
SYNGAP1-201ENST00000293748 TIMELESSQ9UNS1 1208 aa15.59■□□□□ 0.09
SYNGAP1-201ENST00000293748 PLEKHG1Q9ULL1 1385 aa15.59■□□□□ 0.09
SYNGAP1-201ENST00000293748 STK26Q9P289 416 aa15.59■□□□□ 0.09
SYNGAP1-201ENST00000293748 LTKP29376 864 aa15.58■□□□□ 0.09
SYNGAP1-201ENST00000293748 SIN3AQ96ST3 1273 aa15.58■□□□□ 0.09
SYNGAP1-201ENST00000293748 SALL2Q9Y467 1007 aaPredicted RBP15.58■□□□□ 0.09
SYNGAP1-201ENST00000293748 ATF3P18847 181 aa15.58■□□□□ 0.08
SYNGAP1-201ENST00000293748 TOM1O60784 492 aa15.57■□□□□ 0.08
SYNGAP1-201ENST00000293748 KCNA6P17658 529 aa15.57■□□□□ 0.08
SYNGAP1-201ENST00000293748 E9PCH4 1651 aa15.57■□□□□ 0.08
SYNGAP1-201ENST00000293748 IRX6P78412 446 aaPredicted RBP15.57■□□□□ 0.08
SYNGAP1-201ENST00000293748 BECN1Q14457 450 aa15.55■□□□□ 0.08
SYNGAP1-201ENST00000293748 SPHKAPQ2M3C7 1700 aa15.55■□□□□ 0.08
SYNGAP1-201ENST00000293748 PIK3C2BO00750 1634 aa15.54■□□□□ 0.08
SYNGAP1-201ENST00000293748 WDR43Q15061 677 aaKnown RBP eCLIP15.54■□□□□ 0.089e-6■■■□□ 15.6
SYNGAP1-201ENST00000293748 ARXQ96QS3 562 aa15.54■□□□□ 0.08
SYNGAP1-201ENST00000293748 AMOTL2Q9Y2J4 779 aa15.53■□□□□ 0.08
SYNGAP1-201ENST00000293748 PPM1GO15355 546 aaPredicted RBP15.53■□□□□ 0.08
SYNGAP1-201ENST00000293748 PIK3R4Q99570 1358 aa15.53■□□□□ 0.08
SYNGAP1-201ENST00000293748 L3MBTL2Q969R5 705 aa15.53■□□□□ 0.08
SYNGAP1-201ENST00000293748 UBAP1LF5GYI3 381 aa15.52■□□□□ 0.08
SYNGAP1-201ENST00000293748 CERKQ8TCT0 537 aa15.52■□□□□ 0.08
SYNGAP1-201ENST00000293748 SYNMO15061 1565 aa15.52■□□□□ 0.07
SYNGAP1-201ENST00000293748 MSH6P52701 1360 aa15.52■□□□□ 0.07
SYNGAP1-201ENST00000293748 EIF4G2P78344 907 aaKnown RBP eCLIP15.51■□□□□ 0.071e-7■■■■■ 32.2
SYNGAP1-201ENST00000293748 ERICH6BQ5W0A0 696 aa15.51■□□□□ 0.07
SYNGAP1-201ENST00000293748 KIF1BO60333 1816 aa15.51■□□□□ 0.07
SYNGAP1-201ENST00000293748 EIF3AQ14152 1382 aaKnown RBP15.51■□□□□ 0.07
SYNGAP1-201ENST00000293748 TRIM44Q96DX7 344 aaPredicted RBP15.51■□□□□ 0.07
SYNGAP1-201ENST00000293748 ZNF335Q9H4Z2 1342 aaPredicted RBP15.51■□□□□ 0.07
SYNGAP1-201ENST00000293748 SLIT1O75093 1534 aa15.5■□□□□ 0.07
SYNGAP1-201ENST00000293748 ZNF142P52746 1687 aaPredicted RBP15.5■□□□□ 0.07
SYNGAP1-201ENST00000293748 CARD11Q9BXL7 1154 aa15.49■□□□□ 0.07
SYNGAP1-201ENST00000293748 ARHGAP23Q9P227 1491 aa15.49■□□□□ 0.07
SYNGAP1-201ENST00000293748 ADGRF5Q8IZF2 1346 aa15.48■□□□□ 0.07
SYNGAP1-201ENST00000293748 CFAP70Q5T0N1 1121 aa15.48■□□□□ 0.07
SYNGAP1-201ENST00000293748 CADPS2Q86UW7 1296 aa15.48■□□□□ 0.07
SYNGAP1-201ENST00000293748 ROCK2O75116 1388 aaKnown RBP15.48■□□□□ 0.07
SYNGAP1-201ENST00000293748 CLTCL1P53675 1640 aa15.47■□□□□ 0.07
SYNGAP1-201ENST00000293748 ZFYVE9O95405 1425 aa15.46■□□□□ 0.07
SYNGAP1-201ENST00000293748 TRAK1Q9UPV9 953 aa15.46■□□□□ 0.07
SYNGAP1-201ENST00000293748 C14orf93Q9H972 538 aaKnown RBP15.46■□□□□ 0.07
SYNGAP1-201ENST00000293748 PIP4K2BP78356 416 aa15.46■□□□□ 0.06
SYNGAP1-201ENST00000293748 SAFB2Q14151 953 aaKnown RBP eCLIP15.45■□□□□ 0.06
SYNGAP1-201ENST00000293748 TMEM132EQ6IEE7 984 aa15.45■□□□□ 0.06
SYNGAP1-201ENST00000293748 MED14O60244 1454 aa15.44■□□□□ 0.06
SYNGAP1-201ENST00000293748 UBR1Q8IWV7 1749 aa15.44■□□□□ 0.06
SYNGAP1-201ENST00000293748 KDM5AP29375 1690 aaKnown RBP15.44■□□□□ 0.06
SYNGAP1-201ENST00000293748 GOLGA6L22H0YM25 854 aa15.44■□□□□ 0.06
SYNGAP1-201ENST00000293748 C19orf44Q9H6X5 657 aa15.43■□□□□ 0.06
SYNGAP1-201ENST00000293748 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
SYNGAP1-201ENST00000293748 CPS1P31327 1500 aa15.43■□□□□ 0.06
SYNGAP1-201ENST00000293748 PPP4R2Q9NY27 417 aa15.43■□□□□ 0.06
SYNGAP1-201ENST00000293748 CDCA8Q53HL2 280 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms