RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PES1O00541 588 aaKnown RBP21.3■■□□□ 1
SHANK1-201ENST00000293441 GOLGA6L3A6NEY3 463 aa21.3■■□□□ 1
SHANK1-201ENST00000293441 ARID3AQ99856 593 aa21.3■■□□□ 1
SHANK1-201ENST00000293441 FOXD4L6Q3SYB3 417 aaPredicted RBP21.29■■□□□ 1
SHANK1-201ENST00000293441 FOXD4L3Q6VB84 417 aaPredicted RBP21.29■■□□□ 1
SHANK1-201ENST00000293441 CRBNQ96SW2 442 aa21.29■■□□□ 1
SHANK1-201ENST00000293441 SYNE3Q6ZMZ3 975 aa21.29■■□□□ 1
SHANK1-201ENST00000293441 KLHL34Q8N239 644 aa21.29■■□□□ 1
SHANK1-201ENST00000293441 DDX58O95786 925 aaKnown RBP21.28■■□□□ 1
SHANK1-201ENST00000293441 CENPQQ7L2Z9 268 aaPredicted RBP21.28■■□□□ 1
SHANK1-201ENST00000293441 ZNF644Q9H582 1327 aaPredicted RBP21.28■■□□□ 1
SHANK1-201ENST00000293441 APPP05067 770 aa21.28■■□□□ 1
SHANK1-201ENST00000293441 IPO9Q96P70 1041 aaKnown RBP21.28■■□□□ 1
SHANK1-201ENST00000293441 CTDP1Q9Y5B0 961 aaPredicted RBP21.28■■□□□ 1
SHANK1-201ENST00000293441 TPD52L1Q16890 204 aaPredicted RBP21.27■■□□□ 1
SHANK1-201ENST00000293441 MYOM3Q5VTT5 1437 aa21.27■■□□□ 1
SHANK1-201ENST00000293441 HMOX1P09601 288 aa21.27■■□□□ 1
SHANK1-201ENST00000293441 LRRFIP1Q32MZ4 808 aaKnown RBP21.27■■□□□ 1
SHANK1-201ENST00000293441 IFIT2P09913 472 aaKnown RBP21.27■□□□□ 0.99
SHANK1-201ENST00000293441 PRKRIP1Q9H875 184 aaPredicted RBP21.27■□□□□ 0.99
SHANK1-201ENST00000293441 PHF14O94880 888 aa21.26■□□□□ 0.99
SHANK1-201ENST00000293441 FKBP5Q13451 457 aaPredicted RBP21.26■□□□□ 0.99
SHANK1-201ENST00000293441 RAPGEF4Q8WZA2 1011 aa21.25■□□□□ 0.99
SHANK1-201ENST00000293441 MCTP1Q6DN14 999 aa21.25■□□□□ 0.99
SHANK1-201ENST00000293441 EXOC6Q8TAG9 804 aa21.25■□□□□ 0.99
SHANK1-201ENST00000293441 TSPYL4Q9UJ04 414 aa21.25■□□□□ 0.99
SHANK1-201ENST00000293441 CEP89Q96ST8 783 aa21.25■□□□□ 0.99
SHANK1-201ENST00000293441 AQRO60306 1485 aaKnown RBP eCLIP21.25■□□□□ 0.99
SHANK1-201ENST00000293441 RRP1P56182 461 aaKnown RBP21.24■□□□□ 0.99
SHANK1-201ENST00000293441 TCEAL9Q9UHQ7 104 aa21.24■□□□□ 0.99
SHANK1-201ENST00000293441 A0A0U1RQG5 324 aaPredicted RBP21.24■□□□□ 0.99
SHANK1-201ENST00000293441 CABP2Q9NPB3 220 aa21.24■□□□□ 0.99
SHANK1-201ENST00000293441 PHF23Q9BUL5 403 aaPredicted RBP21.23■□□□□ 0.99
SHANK1-201ENST00000293441 RUFY2Q8WXA3 655 aa21.22■□□□□ 0.99
SHANK1-201ENST00000293441 ARHGAP5Q13017 1502 aa21.22■□□□□ 0.99
SHANK1-201ENST00000293441 NLRP2Q9NX02 1062 aa21.22■□□□□ 0.99
SHANK1-201ENST00000293441 ANO2Q9NQ90 1003 aa21.22■□□□□ 0.99
SHANK1-201ENST00000293441 G3BP1Q13283 466 aaKnown RBP eCLIP21.21■□□□□ 0.99
SHANK1-201ENST00000293441 TMEM132EQ6IEE7 984 aa21.21■□□□□ 0.99
SHANK1-201ENST00000293441 DHX16O60231 1041 aaKnown RBP21.21■□□□□ 0.99
SHANK1-201ENST00000293441 AIMP1Q12904 312 aaKnown RBP21.2■□□□□ 0.99
SHANK1-201ENST00000293441 DDX19BQ9UMR2 479 aa21.2■□□□□ 0.98
SHANK1-201ENST00000293441 TPM3P06753 285 aa21.2■□□□□ 0.98
SHANK1-201ENST00000293441 GGNBP2Q9H3C7 697 aa21.2■□□□□ 0.98
SHANK1-201ENST00000293441 CUX1P39880 1505 aa21.2■□□□□ 0.98
SHANK1-201ENST00000293441 IGF1RP08069 1367 aa21.2■□□□□ 0.98
SHANK1-201ENST00000293441 RUNDC1Q96C34 613 aa21.19■□□□□ 0.98
SHANK1-201ENST00000293441 FAM161AQ3B820 660 aa21.19■□□□□ 0.98
SHANK1-201ENST00000293441 API5Q9BZZ5 524 aaKnown RBP21.19■□□□□ 0.98
SHANK1-201ENST00000293441 TRIM29Q14134 588 aa21.19■□□□□ 0.98
SHANK1-201ENST00000293441 RIC3Q7Z5B4 369 aa21.19■□□□□ 0.98
SHANK1-201ENST00000293441 CHMP4CQ96CF2 233 aa21.19■□□□□ 0.98
SHANK1-201ENST00000293441 DZIP1LQ8IYY4 767 aaKnown RBP21.18■□□□□ 0.98
SHANK1-201ENST00000293441 RBM33Q96EV2 1170 aaKnown RBP21.18■□□□□ 0.98
SHANK1-201ENST00000293441 MIA2Q96PC5 1412 aa21.17■□□□□ 0.98
SHANK1-201ENST00000293441 CPLX2Q6PUV4 134 aaKnown RBP21.17■□□□□ 0.98
SHANK1-201ENST00000293441 ROCK1Q13464 1354 aa21.17■□□□□ 0.98
SHANK1-201ENST00000293441 SLC4A3P48751 1232 aa21.16■□□□□ 0.98
SHANK1-201ENST00000293441 WWC1Q8IX03 1113 aa21.16■□□□□ 0.98
SHANK1-201ENST00000293441 ZKSCAN1P17029 563 aaPredicted RBP21.16■□□□□ 0.98
SHANK1-201ENST00000293441 NLRP6P59044 892 aa21.15■□□□□ 0.98
SHANK1-201ENST00000293441 SAMD1Q6SPF0 538 aaPredicted RBP21.15■□□□□ 0.98
SHANK1-201ENST00000293441 ZBED9Q6R2W3 1325 aa21.15■□□□□ 0.98
SHANK1-201ENST00000293441 DDX11L8A8MPP1 907 aa21.15■□□□□ 0.98
SHANK1-201ENST00000293441 USP35Q9P2H5 1018 aa21.15■□□□□ 0.98
SHANK1-201ENST00000293441 FGD6Q6ZV73 1430 aa21.15■□□□□ 0.98
SHANK1-201ENST00000293441 NFXL1Q6ZNB6 911 aa21.14■□□□□ 0.98
SHANK1-201ENST00000293441 TRDNQ13061 729 aa21.14■□□□□ 0.98
SHANK1-201ENST00000293441 ATP6V1DQ9Y5K8 247 aa21.14■□□□□ 0.97
SHANK1-201ENST00000293441 TSR1Q2NL82 804 aaKnown RBP21.14■□□□□ 0.97
SHANK1-201ENST00000293441 GOLGA6L19H0YKK7 550 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 CPLX1O14810 134 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 TPM2P07951 284 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 GNAI1P63096 354 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 TSHZ2Q9NRE2 1034 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 PDE4AP27815 886 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 ESCO1Q5FWF5 840 aa21.13■□□□□ 0.97
SHANK1-201ENST00000293441 REC8O95072 547 aa21.12■□□□□ 0.97
SHANK1-201ENST00000293441 NEUROD6Q96NK8 337 aa21.12■□□□□ 0.97
SHANK1-201ENST00000293441 DDX49Q9Y6V7 483 aaKnown RBP21.12■□□□□ 0.97
SHANK1-201ENST00000293441 FYB1O15117 783 aa21.12■□□□□ 0.97
SHANK1-201ENST00000293441 ABTB2Q8N961 1025 aa21.12■□□□□ 0.97
SHANK1-201ENST00000293441 CWC22Q9HCG8 908 aaKnown RBP21.12■□□□□ 0.97
SHANK1-201ENST00000293441 GOLGA6L1Q8N7Z2 621 aa21.11■□□□□ 0.97
SHANK1-201ENST00000293441 ERICH2A1L162 156 aa21.11■□□□□ 0.97
SHANK1-201ENST00000293441 AFAP1Q8N556 730 aa21.1■□□□□ 0.97
SHANK1-201ENST00000293441 BECN2A8MW95 431 aa21.1■□□□□ 0.97
SHANK1-201ENST00000293441 ANKRD50Q9ULJ7 1429 aa21.1■□□□□ 0.97
SHANK1-201ENST00000293441 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.1■□□□□ 0.97
SHANK1-201ENST00000293441 CCDC27Q2M243 656 aa21.09■□□□□ 0.97
SHANK1-201ENST00000293441 TXNDC2Q86VQ3 553 aa21.09■□□□□ 0.97
SHANK1-201ENST00000293441 FOSBP53539 338 aa21.09■□□□□ 0.97
SHANK1-201ENST00000293441 RNF20Q5VTR2 975 aa21.09■□□□□ 0.97
SHANK1-201ENST00000293441 GPRASP1Q5JY77 1395 aa21.08■□□□□ 0.97
SHANK1-201ENST00000293441 FAM177BA6PVY3 158 aa21.08■□□□□ 0.97
SHANK1-201ENST00000293441 PCMTD1Q96MG8 357 aaPredicted RBP21.07■□□□□ 0.96
SHANK1-201ENST00000293441 PROSER2Q86WR7 435 aaPredicted RBP21.06■□□□□ 0.96
SHANK1-201ENST00000293441 STRN4Q9NRL3 753 aa21.06■□□□□ 0.96
SHANK1-201ENST00000293441 TPM1P09493 284 aa21.06■□□□□ 0.96
SHANK1-201ENST00000293441 WASHC4Q2M389 1173 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms