RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 RRP1P56182 461 aaKnown RBP10.74□□□□□ -0.69
PTCD3-201ENST00000254630 FBXW7Q969H0 707 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 CRBNQ96SW2 442 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 IGF1RP08069 1367 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 SYNJ2O15056 1496 aa10.74□□□□□ -0.69
PTCD3-201ENST00000254630 AKAP17AQ02040 695 aaKnown RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 SF3A1Q15459 793 aaKnown RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 LRRFIP1Q32MZ4 808 aaKnown RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 NECTIN2Q92692 538 aa10.73□□□□□ -0.69
PTCD3-201ENST00000254630 RRBP1Q9P2E9 1410 aaKnown RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 FAM184AQ8NB25 1140 aa10.73□□□□□ -0.69
PTCD3-201ENST00000254630 C9orf78Q9NZ63 289 aaPredicted RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 ATF3P18847 181 aa10.73□□□□□ -0.69
PTCD3-201ENST00000254630 SYTL4Q96C24 671 aaPredicted RBP10.73□□□□□ -0.69
PTCD3-201ENST00000254630 PLIN1O60240 522 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 AMER1Q5JTC6 1135 aaPredicted RBP10.72□□□□□ -0.69
PTCD3-201ENST00000254630 SYNE3Q6ZMZ3 975 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 DIAPH3Q9NSV4 1193 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 CC2D2AQ9P2K1 1620 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 DDX58O95786 925 aaKnown RBP10.72□□□□□ -0.69
PTCD3-201ENST00000254630 CHMP4CQ96CF2 233 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 ERICH3Q5RHP9 1530 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 RIPK4P57078 832 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 DDX11L8A8MPP1 907 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 TPD52L1Q16890 204 aaPredicted RBP10.72□□□□□ -0.69
PTCD3-201ENST00000254630 ANO2Q9NQ90 1003 aa10.72□□□□□ -0.69
PTCD3-201ENST00000254630 CTDP1Q9Y5B0 961 aaPredicted RBP10.72□□□□□ -0.69
PTCD3-201ENST00000254630 EFCAB5A4FU69 1503 aa10.71□□□□□ -0.69
PTCD3-201ENST00000254630 PRM3Q9NNZ6 103 aa10.71□□□□□ -0.69
PTCD3-201ENST00000254630 SUPT6HQ7KZ85 1726 aaKnown RBP10.71□□□□□ -0.69
PTCD3-201ENST00000254630 PDE4CQ08493 712 aa10.71□□□□□ -0.7
PTCD3-201ENST00000254630 TPM2P07951 284 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 IFIT2P09913 472 aaKnown RBP10.7□□□□□ -0.7
PTCD3-201ENST00000254630 RUNDC1Q96C34 613 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 RUFY2Q8WXA3 655 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 ZBED9Q6R2W3 1325 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 FAM161AQ3B820 660 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 RAD21O60216 631 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 VPS37DQ86XT2 251 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 TCEAL9Q9UHQ7 104 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 A0A0U1RQG5 324 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-201ENST00000254630 IFT140Q96RY7 1462 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 SYNJ1O43426 1573 aa10.7□□□□□ -0.7
PTCD3-201ENST00000254630 DDX19BQ9UMR2 479 aa10.69□□□□□ -0.7
PTCD3-201ENST00000254630 TSPYL4Q9UJ04 414 aa10.69□□□□□ -0.7
PTCD3-201ENST00000254630 NCAPD3P42695 1498 aa10.69□□□□□ -0.7
PTCD3-201ENST00000254630 PRKRIP1Q9H875 184 aaPredicted RBP10.69□□□□□ -0.7
PTCD3-201ENST00000254630 EXOC6Q8TAG9 804 aa10.69□□□□□ -0.7
PTCD3-201ENST00000254630 PRG4Q92954 1404 aaPredicted RBP10.69□□□□□ -0.7
PTCD3-201ENST00000254630 CNTLNQ9NXG0 1405 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 TRIM29Q14134 588 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 ANKRD50Q9ULJ7 1429 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 API5Q9BZZ5 524 aaKnown RBP10.68□□□□□ -0.7
PTCD3-201ENST00000254630 ZNF644Q9H582 1327 aaPredicted RBP10.68□□□□□ -0.7
PTCD3-201ENST00000254630 APAF1O14727 1248 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 TPM3P06753 285 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 COG6Q9Y2V7 657 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 PES1O00541 588 aaKnown RBP10.68□□□□□ -0.7
PTCD3-201ENST00000254630 CABP2Q9NPB3 220 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 SMG6Q86US8 1419 aaKnown RBP10.68□□□□□ -0.7
PTCD3-201ENST00000254630 CEP89Q96ST8 783 aa10.68□□□□□ -0.7
PTCD3-201ENST00000254630 GOLGA6L1Q8N7Z2 621 aa10.67□□□□□ -0.7
PTCD3-201ENST00000254630 MCTP1Q6DN14 999 aa10.67□□□□□ -0.7
PTCD3-201ENST00000254630 G3BP1Q13283 466 aaKnown RBP eCLIP10.67□□□□□ -0.71e-8■■■□□ 17
PTCD3-201ENST00000254630 APPP05067 770 aa10.67□□□□□ -0.7
PTCD3-201ENST00000254630 HMOX1P09601 288 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 DZIP1LQ8IYY4 767 aaKnown RBP10.66□□□□□ -0.7
PTCD3-201ENST00000254630 SNAPC4Q5SXM2 1469 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 PLEKHH2Q8IVE3 1493 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 RAPGEF4Q8WZA2 1011 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 ATP6V1DQ9Y5K8 247 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 TOP2BQ02880 1626 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 FKBP5Q13451 457 aaPredicted RBP10.66□□□□□ -0.7
PTCD3-201ENST00000254630 CCDC7Q96M83 1385 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 GNAI1P63096 354 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 NUTM2GQ5VZR2 741 aa10.66□□□□□ -0.7
PTCD3-201ENST00000254630 RBM33Q96EV2 1170 aaKnown RBP10.65□□□□□ -0.7
PTCD3-201ENST00000254630 ARID3AQ99856 593 aa10.65□□□□□ -0.7
PTCD3-201ENST00000254630 RIC3Q7Z5B4 369 aa10.65□□□□□ -0.7
PTCD3-201ENST00000254630 TSHZ2Q9NRE2 1034 aa10.65□□□□□ -0.7
PTCD3-201ENST00000254630 NFXL1Q6ZNB6 911 aa10.65□□□□□ -0.7
PTCD3-201ENST00000254630 GPRASP1Q5JY77 1395 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 ERICH2A1L162 156 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 TSR1Q2NL82 804 aaKnown RBP10.64□□□□□ -0.71
PTCD3-201ENST00000254630 STAC3Q96MF2 364 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 REC8O95072 547 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 GOLGA6L19H0YKK7 550 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 NINLQ9Y2I6 1382 aa10.64□□□□□ -0.71
PTCD3-201ENST00000254630 ZKSCAN1P17029 563 aaPredicted RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 PDE4AP27815 886 aa10.63□□□□□ -0.71
PTCD3-201ENST00000254630 DHX16O60231 1041 aaKnown RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 SKOR2Q2VWA4 1001 aaPredicted RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 FOXD4L6Q3SYB3 417 aaPredicted RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 FOXD4L3Q6VB84 417 aaPredicted RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 RNF20Q5VTR2 975 aa10.63□□□□□ -0.71
PTCD3-201ENST00000254630 CWC22Q9HCG8 908 aaKnown RBP10.63□□□□□ -0.71
PTCD3-201ENST00000254630 USP35Q9P2H5 1018 aa10.63□□□□□ -0.71
PTCD3-201ENST00000254630 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
PTCD3-201ENST00000254630 KLHL34Q8N239 644 aa10.63□□□□□ -0.71
PTCD3-201ENST00000254630 NESP48681 1621 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms