RNA–Protein interactions for RNA: YDR299W

BFR2, Transcript of Component of the SSU and 90S preribosomes, yeast

Gene BFR2, Length 1,605 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BFR2	YDR299W	TRM5	P38793	499 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	IRC22	P40006	225 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	IRC18	P47056	224 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	DOC1	P53068	250 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	FSF1	Q12029	327 aa	Known RBP	0.51	□□□□□ -2.33
BFR2	YDR299W	SEY1	Q99287	776 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	ATG40	Q99325	256 aa		0.51	□□□□□ -2.33
BFR2	YDR299W	RPL27B	P0C2H7	136 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	YBR121C-A	P0C5L4	52 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	YPR170W-B	P0C5R9	85 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	NHP6B	P11633	99 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	CKS1	P20486	150 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	RPS5	P26783	225 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	TCA17	P32613	152 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	MGM101	P32787	269 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	PTM1	P32857	523 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	NTF2	P33331	125 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	LDB7	P38210	180 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	AST2	P39945	430 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	RMD6	P39975	231 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	EDC3	P39998	551 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	YER085C	P40058	173 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	ERJ5	P43613	295 aa	Predicted RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	BXI1	P48558	297 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	NUP57	P48837	541 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	TRM9	P49957	279 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	BOL2	P53082	120 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.5	□□□□□ -2.33	not detected
BFR2	YDR299W	CUE4	Q04201	117 aa	Predicted RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	YLR162W	Q06235	118 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	JLP1	Q12358	412 aa		0.5	□□□□□ -2.33
BFR2	YDR299W	CYR1	P08678	2026 aa	Known RBP	0.5	□□□□□ -2.33
BFR2	YDR299W	RPL28	P02406	149 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	RPL25	P04456	142 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	CPA1	P07258	411 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	YLR156W	P0CE96	114 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YLR159W	P0CE97	114 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YLR161W	P0CE98	114 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	TCP1	P12612	559 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	STE18	P18852	110 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	DBF2	P22204	572 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	BET1	P22804	142 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	MRPL17	P36528	281 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	OPY1	P38271	328 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	GAA1	P39012	614 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YER034W	P40022	185 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	RIO2	P40160	425 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	GVP36	P40531	326 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	OTU1	P43558	301 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	RCE1	Q03530	315 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YMR007W	Q03675	126 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	TRM12	Q04235	462 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	DYN3	Q04949	312 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	MDM32	Q12171	622 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	FLO9	P39712	1322 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	IKI3	Q06706	1349 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	CFT1	Q06632	1357 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	THP2	O13539	261 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	VAR1	P02381	398 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	SIR2	P06700	562 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	SEC4	P07560	215 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	RPL2A	P0CX45	254 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	RPL2B	P0CX46	254 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	KSS1	P14681	368 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	GCN3	P14741	305 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YPK2	P18961	677 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YMR31	P19955	123 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	PBN1	P25580	416 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	URA8	P38627	578 aa	Predicted RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	AIM2	P39721	246 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	HMF1	P40037	129 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	YER076C	P40049	302 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	RTR1	P40084	226 aa	Predicted RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	POP3	P53833	195 aa	Predicted RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	NUP49	Q02199	472 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	GRX5	Q02784	150 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YMR226C	Q05016	267 aa	Known RBP	0.49	□□□□□ -2.33
BFR2	YDR299W	FUS2	Q05670	677 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	GGA1	Q06336	557 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	YHR007C-A	Q07074	71 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	CSI2	Q08054	341 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	MSA1	Q08471	629 aa		0.49	□□□□□ -2.33
BFR2	YDR299W	TUS1	Q06412	1307 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	TIM9	O74700	87 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	CDC28	P00546	298 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	CDC36	P06100	191 aa	Predicted RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	RHO1	P06780	209 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	RPB3	P16370	318 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	COQ1	P18900	473 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	YCR090C	P25654	182 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.48	□□□□□ -2.33	not detected
BFR2	YDR299W	SEC17	P32602	292 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	PRX1	P34227	261 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	KDX1	P36005	433 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	SIP3	P38717	1229 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	RFC4	P40339	323 aa	Known RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	TMA22	P47089	198 aa	Predicted RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	YAE1	P47118	141 aa	Predicted RBP	0.48	□□□□□ -2.33
BFR2	YDR299W	AIM25	P47140	327 aa		0.48	□□□□□ -2.33
BFR2	YDR299W	UBC12	P52491	188 aa		0.48	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 224.8 ms