RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 YJR056CP47115 236 aa-3.46□□□□□ -2.96
snR40snR40 SGF11Q03067 99 aa-3.46□□□□□ -2.96
snR40snR40 YPR064WQ12492 139 aa-3.46□□□□□ -2.96
snR40snR40 YPT52P36018 234 aaKnown RBP-3.47□□□□□ -2.96
snR40snR40 MVB12P42939 101 aa-3.47□□□□□ -2.96
snR40snR40 YGL034CP53186 121 aa-3.47□□□□□ -2.96
snR40snR40 TIM10P87108 93 aa-3.47□□□□□ -2.96
snR40snR40 YMR209CQ03648 457 aa-3.47□□□□□ -2.96
snR40snR40 REX3Q12090 404 aa-3.47□□□□□ -2.96
snR40snR40 YBL008W-AQ3E821 79 aa-3.47□□□□□ -2.96
snR40snR40 SEN1Q00416 2231 aaKnown RBP-3.47□□□□□ -2.97
snR40snR40 FCY2P17064 533 aa-3.48□□□□□ -2.97
snR40snR40 OPI1P21957 404 aa-3.48□□□□□ -2.97
snR40snR40 BUB2P26448 306 aaPredicted RBP-3.48□□□□□ -2.97
snR40snR40 ERV1P27882 189 aa-3.48□□□□□ -2.97
snR40snR40 URA7P28274 579 aaKnown RBP-3.48□□□□□ -2.97
snR40snR40 LTV1P34078 463 aa-3.48□□□□□ -2.97
snR40snR40 SFK1P35735 353 aa-3.48□□□□□ -2.97
snR40snR40 MRX3P38172 270 aa-3.48□□□□□ -2.97
snR40snR40 YBL028CP38202 106 aa-3.48□□□□□ -2.97
snR40snR40 IES5P40060 125 aa-3.48□□□□□ -2.97
snR40snR40 MPP10P47083 593 aaKnown RBP-3.48□□□□□ -2.97
snR40snR40 YNL050CP53952 270 aa-3.48□□□□□ -2.97
snR40snR40 DAD4P69851 72 aa-3.48□□□□□ -2.97
snR40snR40 TAF9Q05027 157 aa-3.48□□□□□ -2.97
snR40snR40 ARV1Q06541 321 aa-3.48□□□□□ -2.97
snR40snR40 RRP42Q12277 265 aaPredicted RBP-3.48□□□□□ -2.97
snR40snR40 GCN1P33892 2672 aaKnown RBP-3.49□□□□□ -2.97
snR40snR40 STE18P18852 110 aa-3.49□□□□□ -2.97
snR40snR40 SWE1P32944 819 aa-3.49□□□□□ -2.97
snR40snR40 SNC2P33328 115 aa-3.49□□□□□ -2.97
snR40snR40 BTT1P40314 149 aaPredicted RBP-3.49□□□□□ -2.97
snR40snR40 RFC2P40348 353 aa-3.49□□□□□ -2.97
snR40snR40 CIN5P40917 295 aa-3.49□□□□□ -2.97
snR40snR40 RMR1P53060 241 aa-3.49□□□□□ -2.97
snR40snR40 RGS2Q99188 309 aa-3.49□□□□□ -2.97
snR40snR40 YOS9Q99220 542 aa-3.49□□□□□ -2.97
snR40snR40 YLR422WQ06409 1932 aa-3.49□□□□□ -2.97
snR40snR40 SWI1P09547 1314 aa-3.49□□□□□ -2.97
snR40snR40 YAL064W-BO13512 126 aa-3.5□□□□□ -2.97
snR40snR40 PHO13P19881 312 aa-3.5□□□□□ -2.97
snR40snR40 ECM33P38248 429 aaKnown RBP-3.5□□□□□ -2.97
snR40snR40 YHR122WP38829 231 aa-3.5□□□□□ -2.97
snR40snR40 ABZ2Q03266 374 aa-3.5□□□□□ -2.97
snR40snR40 BUD21Q08492 214 aaPredicted RBP-3.5□□□□□ -2.97
snR40snR40 FCY1Q12178 158 aa-3.5□□□□□ -2.97
snR40snR40 YDR010CQ12426 110 aa-3.5□□□□□ -2.97
snR40snR40 RSF2P46974 1380 aa-3.51□□□□□ -2.97
snR40snR40 COX8P04039 78 aa-3.51□□□□□ -2.97
snR40snR40 RPL31AP0C2H8 113 aaKnown RBP-3.51□□□□□ -2.97
snR40snR40 CKA1P15790 372 aa-3.51□□□□□ -2.97
snR40snR40 SHB17P36136 271 aaKnown RBP-3.51□□□□□ -2.97
snR40snR40 AST2P39945 430 aaKnown RBP-3.51□□□□□ -2.97
snR40snR40 RSM25P40496 264 aa-3.51□□□□□ -2.97
snR40snR40 EAF6P47128 113 aa-3.51□□□□□ -2.97
snR40snR40 YPL257WQ08974 193 aa-3.51□□□□□ -2.97
snR40snR40 SPT4P32914 102 aaPredicted RBP-3.52□□□□□ -2.97
snR40snR40 ALB1P47019 175 aaPredicted RBP-3.52□□□□□ -2.97
snR40snR40 IBA57P47158 497 aa-3.52□□□□□ -2.97
snR40snR40 UBC12P52491 188 aa-3.52□□□□□ -2.97
snR40snR40 GPM2Q12008 311 aa-3.52□□□□□ -2.97
snR40snR40 FRE6Q12473 712 aa-3.52□□□□□ -2.97
snR40snR40 FMP27Q06179 2628 aa-3.52□□□□□ -2.97
snR40snR40 CDC39P25655 2108 aaKnown RBP-3.52□□□□□ -2.97
snR40snR40 VMA5P31412 392 aaKnown RBP-3.53□□□□□ -2.97
snR40snR40 SER33P40510 469 aa-3.53□□□□□ -2.97
snR40snR40 RPA43P46669 326 aa-3.53□□□□□ -2.97
snR40snR40 SXM1Q04175 944 aaKnown RBP-3.53□□□□□ -2.97
snR40snR40 HRD1Q08109 551 aa-3.53□□□□□ -2.97
snR40snR40 PSF1Q12488 208 aa-3.53□□□□□ -2.97
snR40snR40 IZH4Q99393 312 aa-3.53□□□□□ -2.97
snR40snR40 TOR2P32600 2474 aaKnown RBP-3.53□□□□□ -2.98
snR40snR40 TOR1P35169 2470 aa-3.53□□□□□ -2.98
snR40snR40 HMX1P32339 317 aa-3.54□□□□□ -2.98
snR40snR40 ETR1P38071 380 aa-3.54□□□□□ -2.98
snR40snR40 URA8P38627 578 aaPredicted RBP-3.54□□□□□ -2.98
snR40snR40 GCD14P46959 383 aaPredicted RBP-3.54□□□□□ -2.98
snR40snR40 YGR111WP53265 400 aa-3.54□□□□□ -2.98
snR40snR40 RPL5P26321 297 aaKnown RBP-3.55□□□□□ -2.98
snR40snR40 RIB1P38066 345 aa-3.55□□□□□ -2.98
snR40snR40 NSG1P38837 291 aa-3.55□□□□□ -2.98
snR40snR40 CCC1P47818 322 aa-3.55□□□□□ -2.98
snR40snR40 YGL230CP53074 147 aa-3.55□□□□□ -2.98
snR40snR40 PDR17P53844 350 aa-3.55□□□□□ -2.98
snR40snR40 HUG1Q6Q5K6 68 aa-3.55□□□□□ -2.98
snR40snR40 RPF1P38805 295 aaKnown RBP-3.56□□□□□ -2.98
snR40snR40 DSN1P40568 576 aa-3.56□□□□□ -2.98
snR40snR40 CPD1P53314 239 aa-3.56□□□□□ -2.98
snR40snR40 YPR172WQ06608 200 aa-3.56□□□□□ -2.98
snR40snR40 YDR056CQ12025 205 aa-3.56□□□□□ -2.98
snR40snR40 POM33Q12164 279 aa-3.56□□□□□ -2.98
snR40snR40 THR4P16120 514 aaKnown RBP-3.57□□□□□ -2.98
snR40snR40 HEK2P38199 381 aaKnown RBP RIP-Chip data-3.57□□□□□ -2.98not detected
snR40snR40 CCS1P40202 249 aaKnown RBP-3.57□□□□□ -2.98
snR40snR40 JEM1P40358 645 aa-3.57□□□□□ -2.98
snR40snR40 IRC6P43615 237 aa-3.57□□□□□ -2.98
snR40snR40 SBH2P52871 88 aa-3.57□□□□□ -2.98
snR40snR40 SEI1Q06058 285 aa-3.57□□□□□ -2.98
snR40snR40 PRP11Q07350 266 aaPredicted RBP-3.57□□□□□ -2.98
snR40snR40 APC9Q12107 265 aa-3.57□□□□□ -2.98
Retrieved 100 of 5,963 RNA–protein pairs in 285.1 ms