RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	ICE2	P40499	491 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	PHS1	P40857	217 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	NIF3	P53081	288 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	YGR079W	P53249	370 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	DMA2	P53924	522 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	RSM23	Q01163	450 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	VPS28	Q02767	242 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	EKI1	Q03764	534 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	UPS3	Q04006	179 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	SSL1	Q04673	461 aa	Predicted RBP	4.37	□□□□□ -1.71
CAF4	YKR036C	YPL257W	Q08974	193 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	SRL2	Q12020	392 aa		4.37	□□□□□ -1.71
CAF4	YKR036C	ADK1	P07170	222 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-F	P0CX61	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-GR2	P0CX62	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	GLC7	P32598	312 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	TRS65	P32893	560 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	MRPL27	P36526	146 aa	Predicted RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	OTU1	P43558	301 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TAF4	P50105	388 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	SKP1	P52286	194 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	YGL262W	P53054	175 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TNA1	P53322	534 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	SSU72	P53538	206 aa	Predicted RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	SMX3	P54999	86 aa	Predicted RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	ACT1	P60010	375 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	PIR1	Q03178	341 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	DIG2	Q03373	323 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	PKR1	Q03880	122 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	GMC1	Q04399	608 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	NAT4	Q04751	285 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	YLR456W	Q06199	204 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PST1	Q12355	444 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PEX11	Q12462	236 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	Q0144	Q9ZZW2	109 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-LR1	P0C2J4	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	MIH1	P23748	554 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-C	P25383	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PRO1	P32264	428 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TCA17	P32613	152 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PHO11	P35842	467 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	YBR197C	P38306	217 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PRE3	P38624	215 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PHO12	P38693	467 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	RPS20	P38701	121 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	BDH1	P39714	382 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PAU5	P43575	122 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TEX1	P53851	422 aa	Known RBP	4.36	□□□□□ -1.71
CAF4	YKR036C	BUD25	P85052	153 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-DR2	Q03483	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TPO4	Q12256	659 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-B	Q12260	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-OR2	Q12293	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-DR1	Q12392	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-OR1	Q12439	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	LAS17	Q12446	633 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	NAG1	Q8TGN9	163 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	TY2A-DR3	Q99303	438 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	PET20	Q99373	253 aa		4.36	□□□□□ -1.71
CAF4	YKR036C	RPP2A	P05319	106 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	SPT15	P13393	240 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	BGL2	P15703	313 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	RBK1	P25332	333 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	ELO2	P25358	347 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	STP22	P25604	385 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	MKK1	P32490	508 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	ALK2	P32789	676 aa	Predicted RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	PPZ2	P33329	710 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	PAN3	P36102	679 aa	Predicted RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	CUE1	P38428	203 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	IRC22	P40006	225 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	NSA2	P40078	261 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	DLS1	P40366	167 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	SDP1	P40479	209 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	LYS12	P40495	371 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	AVT7	P40501	490 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	UBP8	P50102	471 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	RMD9	P53140	646 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	YNR066C	P53752	436 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	CSL4	P53859	292 aa	Predicted RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	SWS2	P53937	143 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	SKO1	Q02100	647 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	YAP6	Q03935	383 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	AGE1	Q04412	482 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	ASM4	Q05166	528 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	YLR036C	Q07986	203 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	PAU23	Q07987	124 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	WTM2	Q12206	467 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	RDL1	Q12305	139 aa	Known RBP	4.35	□□□□□ -1.71
CAF4	YKR036C	PAU17	Q12370	124 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	RAX2	Q12465	1220 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	YLR146W-A	Q2V2P1	62 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	YDL007C-A	Q2V2Q0	85 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	Q0182	Q9ZZW1	134 aa		4.35	□□□□□ -1.71
CAF4	YKR036C	YOL162W	P0CF19	215 aa		4.34	□□□□□ -1.71
CAF4	YKR036C	ERS1	P17261	260 aa		4.34	□□□□□ -1.71
CAF4	YKR036C	TRR1	P29509	319 aa	Known RBP	4.34	□□□□□ -1.71
CAF4	YKR036C	UTR5	P32630	166 aa		4.34	□□□□□ -1.71
CAF4	YKR036C	UME6	P39001	836 aa		4.34	□□□□□ -1.71
CAF4	YKR036C	LTP1	P40347	161 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms