RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	YPR127W	Q06494	345 aa		3.48	□□□□□ -1.85
UBC8	YEL012W	MIM1	Q08176	113 aa		3.48	□□□□□ -1.85
UBC8	YEL012W	WTM1	Q12363	437 aa	Known RBP	3.48	□□□□□ -1.85
UBC8	YEL012W	YDL199C	Q12407	687 aa		3.48	□□□□□ -1.85
UBC8	YEL012W	FRE6	Q12473	712 aa		3.48	□□□□□ -1.85
UBC8	YEL012W	YKL068W-A	Q3E826	78 aa		3.48	□□□□□ -1.85
UBC8	YEL012W	YOL162W	P0CF19	215 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	LSB5	P25369	354 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	MSN4	P33749	630 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	CLG1	P35190	452 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	YBR137W	P38276	179 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	MST28	P39552	234 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	PFS2	P42841	465 aa	Known RBP	3.47	□□□□□ -1.85
UBC8	YEL012W	YGL235W	P53071	178 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	USE1	P53146	245 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	YNL046W	P53956	172 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	MEH1	Q02205	184 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	TLG1	Q03322	224 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	RVB1	Q03940	463 aa	Known RBP	3.47	□□□□□ -1.85
UBC8	YEL012W	YDR114C	Q04597	100 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	RRT8	Q08219	342 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	NSL1	Q12143	216 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	NFI1	Q12216	726 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	MRX4	Q12467	430 aa		3.47	□□□□□ -1.85
UBC8	YEL012W	NFT1	P0CE68	1218 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	CSM1	P25651	190 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.46	□□□□□ -1.86	not detected
UBC8	YEL012W	DEP1	P31385	405 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	AGA1	P32323	725 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	RTC2	P38279	296 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	YHR035W	P38769	630 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	MDM31	P38880	579 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	ALP1	P38971	573 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	YJL213W	P40896	331 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	BAT2	P47176	376 aa	Known RBP	3.46	□□□□□ -1.86
UBC8	YEL012W	PHB2	P50085	310 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	YNL033W	P53964	284 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	YNL019C	P53975	284 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	RRN5	Q02983	363 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	PRP3	Q03338	469 aa	Predicted RBP	3.46	□□□□□ -1.86
UBC8	YEL012W	GMC1	Q04399	608 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	ADH6	Q04894	360 aa	Known RBP	3.46	□□□□□ -1.86
UBC8	YEL012W	TAZ1	Q06510	381 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	SPC3	Q12133	184 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	SFM1	Q12314	213 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	YMR230W-A	Q3E7B5	62 aa		3.46	□□□□□ -1.86
UBC8	YEL012W	COX5B	P00425	151 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	RPL6B	P05739	176 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	RAD7	P06779	565 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	GDH1	P07262	454 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	PEX3	P28795	441 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	NUF2	P33895	451 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	YKR015C	P36111	568 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	TRM5	P38793	499 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	YHR218W	P38899	603 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	WSC2	P53832	503 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.45	□□□□□ -1.86	not detected
UBC8	YEL012W	BNA7	Q04066	261 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	SEC13	Q04491	297 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	YDR286C	Q05530	114 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	ATG38	Q05789	226 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	GPI11	Q06636	219 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	RRS1	Q08746	203 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	TIM18	Q08749	192 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	USB1	Q12208	290 aa	Known RBP	3.45	□□□□□ -1.86
UBC8	YEL012W	YOR029W	Q12243	111 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	YBR298C-A	Q8TGK4	73 aa		3.45	□□□□□ -1.86
UBC8	YEL012W	OPI3	P05375	206 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	PDE2	P06776	526 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	RPC40	P07703	335 aa	Known RBP	3.44	□□□□□ -1.86
UBC8	YEL012W	STE18	P18852	110 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	NTG1	P31378	399 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	RIB1	P38066	345 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	MIX23	P38162	196 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	SIM1	P40472	476 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	OST1	P41543	476 aa	Known RBP	3.44	□□□□□ -1.86
UBC8	YEL012W	RRN9	P53437	365 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	MSO1	P53604	210 aa	Known RBP	3.44	□□□□□ -1.86
UBC8	YEL012W	YNR064C	P53750	290 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	CAF40	P53829	373 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	NUP49	Q02199	472 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	PET191	Q02772	108 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	BET5	Q03630	159 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	ASA1	Q06822	443 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	YPL199C	Q08954	240 aa		3.44	□□□□□ -1.86
UBC8	YEL012W	THP3	Q12049	470 aa	Known RBP	3.44	□□□□□ -1.86
UBC8	YEL012W	DSF1	P0CX08	502 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	YNR073C	P0CX09	502 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	KRR1	P25586	316 aa	Predicted RBP	3.43	□□□□□ -1.86
UBC8	YEL012W	MRPL4	P36517	319 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	QDR3	P38227	689 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	RBG1	P39729	369 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	SLM1	P40485	686 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	SSN8	P47821	323 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	NSA1	P53136	463 aa	Predicted RBP	3.43	□□□□□ -1.86
UBC8	YEL012W	EOS1	P53938	366 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	RNH201	P53942	307 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	YDR391C	Q04170	232 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	GGA1	Q06336	557 aa		3.43	□□□□□ -1.86
UBC8	YEL012W	RRP9	Q06506	573 aa	Known RBP	3.43	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms