RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeastyeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SGD1YLR336C YPR098CQ06089 161 aa1.34□□□□□ -2.2
SGD1YLR336C YLR179CQ06252 201 aaKnown RBP1.34□□□□□ -2.2
SGD1YLR336C PAM18Q07914 168 aa1.34□□□□□ -2.2
SGD1YLR336C UTR5P32630 166 aa1.33□□□□□ -2.2
SGD1YLR336C USE1P53146 245 aa1.33□□□□□ -2.2
SGD1YLR336C MRH4P53166 561 aa1.33□□□□□ -2.2
SGD1YLR336C RSM10Q03201 203 aa1.33□□□□□ -2.2
SGD1YLR336C GRH1Q04410 372 aaKnown RBP1.33□□□□□ -2.2
SGD1YLR336C YPR147CQ06522 304 aaKnown RBP1.33□□□□□ -2.2
SGD1YLR336C CSM4Q08955 156 aa1.33□□□□□ -2.2
SGD1YLR336C YCT1Q12235 531 aa1.33□□□□□ -2.2
SGD1YLR336C PST1Q12355 444 aa1.33□□□□□ -2.2
SGD1YLR336C SWI1P09547 1314 aa1.33□□□□□ -2.2
SGD1YLR336C THO1P40040 218 aaKnown RBP1.33□□□□□ -2.2
SGD1YLR336C HOC1P47124 396 aa1.33□□□□□ -2.2
SGD1YLR336C YJR141WP47172 347 aaPredicted RBP1.33□□□□□ -2.2
SGD1YLR336C ATG17Q06410 417 aa1.33□□□□□ -2.2
SGD1YLR336C SLD7Q08457 257 aa1.33□□□□□ -2.2
SGD1YLR336C SEC22P22214 214 aa1.32□□□□□ -2.2
SGD1YLR336C YJR079WP47126 109 aa1.32□□□□□ -2.2
SGD1YLR336C SPG4Q04438 115 aa1.32□□□□□ -2.2
SGD1YLR336C MYO5Q04439 1219 aaKnown RBP1.32□□□□□ -2.2
SGD1YLR336C VPS68Q12016 184 aa1.32□□□□□ -2.2
SGD1YLR336C MED4Q12343 284 aa1.32□□□□□ -2.2
SGD1YLR336C EMP46Q12396 444 aa1.32□□□□□ -2.2
SGD1YLR336C CFT1Q06632 1357 aaKnown RBP1.32□□□□□ -2.2
SGD1YLR336C SGA1P08019 549 aa1.32□□□□□ -2.2
SGD1YLR336C LDB7P38210 180 aa1.32□□□□□ -2.2
SGD1YLR336C PET117Q02771 107 aa1.32□□□□□ -2.2
SGD1YLR336C YOR186WQ08560 144 aa1.32□□□□□ -2.2
SGD1YLR336C RRS1Q08746 203 aaKnown RBP1.32□□□□□ -2.2
SGD1YLR336C YPL229WQ99395 206 aa1.32□□□□□ -2.2
SGD1YLR336C RPL26AP05743 127 aaKnown RBP1.31□□□□□ -2.2
SGD1YLR336C SPT8P38915 602 aa1.31□□□□□ -2.2
SGD1YLR336C BFR1P38934 470 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2 RIP-Chip
SGD1YLR336C RPL26BP53221 127 aaKnown RBP1.31□□□□□ -2.2
SGD1YLR336C SGE1P33335 543 aa1.31□□□□□ -2.2
SGD1YLR336C YDR124WQ04608 324 aa1.31□□□□□ -2.2
SGD1YLR336C SYC1Q08553 188 aaPredicted RBP1.31□□□□□ -2.2
SGD1YLR336C MATALPHA1P0CY06 175 aa1.31□□□□□ -2.2
SGD1YLR336C HMLALPHA1P0CY07 175 aa1.31□□□□□ -2.2
SGD1YLR336C YKL075CP36083 450 aa1.31□□□□□ -2.2
SGD1YLR336C DRE2P36152 348 aa1.31□□□□□ -2.2
SGD1YLR336C MSA2P36157 363 aa1.31□□□□□ -2.2
SGD1YLR336C COG3P40094 801 aa1.31□□□□□ -2.2
SGD1YLR336C FMC1P40491 155 aa1.31□□□□□ -2.2
SGD1YLR336C RGM1Q00453 211 aa1.31□□□□□ -2.2
SGD1YLR336C GOT1Q03554 138 aa1.31□□□□□ -2.2
SGD1YLR336C SUE1Q06524 206 aa1.31□□□□□ -2.2
SGD1YLR336C RRP40Q08285 240 aaKnown RBP1.31□□□□□ -2.2
SGD1YLR336C MSA1Q08471 629 aa1.31□□□□□ -2.2
SGD1YLR336C RPO26P20435 155 aa1.3□□□□□ -2.2
SGD1YLR336C YCR016WP25617 290 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C RPS5P26783 225 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C FZO1P38297 855 aa1.3□□□□□ -2.2
SGD1YLR336C YHB1P39676 399 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C NUP84P52891 726 aa1.3□□□□□ -2.2
SGD1YLR336C MRPL50P53724 139 aa1.3□□□□□ -2.2
SGD1YLR336C YNL046WP53956 172 aa1.3□□□□□ -2.2
SGD1YLR336C RHO3Q00245 231 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C SEI1Q06058 285 aa1.3□□□□□ -2.2
SGD1YLR336C SNU23Q12368 194 aaPredicted RBP1.3□□□□□ -2.2
SGD1YLR336C YCR102CP25608 368 aa1.3□□□□□ -2.2
SGD1YLR336C RCN1P36054 211 aa1.3□□□□□ -2.2
SGD1YLR336C SSH1P38353 490 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C YGP1P38616 354 aaKnown RBP1.3□□□□□ -2.2
SGD1YLR336C YER189WP40104 122 aa1.3□□□□□ -2.2
SGD1YLR336C YJL016WP47072 561 aa1.3□□□□□ -2.2
SGD1YLR336C DSK2P48510 373 aa1.3□□□□□ -2.2
SGD1YLR336C SLM2P53955 656 aa1.3□□□□□ -2.2
SGD1YLR336C PEX12Q04370 399 aa1.3□□□□□ -2.2
SGD1YLR336C KRE28Q04431 385 aa1.3□□□□□ -2.2
SGD1YLR336C MRPL39P36533 70 aa1.29□□□□□ -2.2
SGD1YLR336C YHR127WP38833 243 aaKnown RBP1.29□□□□□ -2.2
SGD1YLR336C TIF34P40217 347 aaKnown RBP1.29□□□□□ -2.2
SGD1YLR336C SMD3P43321 101 aaKnown RBP1.29□□□□□ -2.2
SGD1YLR336C YGL159WP53110 370 aa1.29□□□□□ -2.2
SGD1YLR336C YLR030WQ07967 263 aa1.29□□□□□ -2.2
SGD1YLR336C YLR126CQ12288 251 aa1.29□□□□□ -2.2
SGD1YLR336C BBP1Q12365 385 aa1.29□□□□□ -2.2
SGD1YLR336C YLR462WO13556 202 aa1.29□□□□□ -2.2
SGD1YLR336C CLB6P32943 380 aa1.29□□□□□ -2.2
SGD1YLR336C YEL075CP39972 122 aa1.29□□□□□ -2.2
SGD1YLR336C OST2P46964 130 aa1.29□□□□□ -2.2
SGD1YLR336C YLR283WQ05867 314 aa1.29□□□□□ -2.2
SGD1YLR336C CDD1Q06549 142 aa1.29□□□□□ -2.2
SGD1YLR336C SAS5Q99314 248 aa1.29□□□□□ -2.2
SGD1YLR336C YHR139C-AO13536 103 aa1.28□□□□□ -2.2
SGD1YLR336C ERD2P18414 219 aa1.28□□□□□ -2.2
SGD1YLR336C SNF6P18888 332 aa1.28□□□□□ -2.2
SGD1YLR336C MSN4P33749 630 aa1.28□□□□□ -2.2
SGD1YLR336C YER085CP40058 173 aa1.28□□□□□ -2.2
SGD1YLR336C NOP13P53883 403 aaKnown RBP RIP-Chip data1.28□□□□□ -2.2not detected
SGD1YLR336C YHR032W-AP0C5N6 59 aa1.28□□□□□ -2.2
SGD1YLR336C CTR2P38865 189 aa1.28□□□□□ -2.2
SGD1YLR336C COS6P53344 381 aa1.28□□□□□ -2.2
SGD1YLR336C SPO77Q06134 477 aa1.28□□□□□ -2.2
SGD1YLR336C YPR172WQ06608 200 aa1.28□□□□□ -2.2
SGD1YLR336C SCO1P23833 295 aa1.27□□□□□ -2.21
SGD1YLR336C ERG24P32462 438 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 107.4 ms