RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W ECO1P43605 281 aa2.36□□□□□ -2.03
PRE1YER012W HOC1P47124 396 aa2.36□□□□□ -2.03
PRE1YER012W PRP38Q00723 242 aaPredicted RBP2.36□□□□□ -2.03
PRE1YER012W DBP9Q06218 594 aaKnown RBP2.36□□□□□ -2.03
PRE1YER012W ASA1Q06822 443 aa2.36□□□□□ -2.03
PRE1YER012W NDE2Q07500 545 aa2.36□□□□□ -2.03
PRE1YER012W YFH1Q07540 174 aa2.36□□□□□ -2.03
PRE1YER012W PSY3Q12318 242 aa2.36□□□□□ -2.03
PRE1YER012W NCA2Q12374 616 aa2.36□□□□□ -2.03
PRE1YER012W BLM10P43583 2143 aa2.36□□□□□ -2.03
PRE1YER012W CDC8P00572 216 aa2.35□□□□□ -2.03
PRE1YER012W YSF3P0C074 85 aaPredicted RBP2.35□□□□□ -2.03
PRE1YER012W GCD2P12754 651 aaPredicted RBP2.35□□□□□ -2.03
PRE1YER012W CAP2P13517 287 aa2.35□□□□□ -2.03
PRE1YER012W EXG1P23776 448 aaKnown RBP2.35□□□□□ -2.03
PRE1YER012W YCL042WP25572 119 aa2.35□□□□□ -2.03
PRE1YER012W ATG15P25641 520 aa2.35□□□□□ -2.03
PRE1YER012W CAT2P32796 670 aaKnown RBP2.35□□□□□ -2.03
PRE1YER012W DOA1P36037 715 aa2.35□□□□□ -2.03
PRE1YER012W YBR062CP38239 180 aa2.35□□□□□ -2.03
PRE1YER012W FES1P38260 290 aa2.35□□□□□ -2.03
PRE1YER012W NAS2P40555 220 aa2.35□□□□□ -2.03
PRE1YER012W ALB1P47019 175 aaPredicted RBP2.35□□□□□ -2.03
PRE1YER012W SEH1P53011 349 aaKnown RBP2.35□□□□□ -2.03
PRE1YER012W MRM2P53123 320 aa2.35□□□□□ -2.03
PRE1YER012W GTR2P53290 341 aa2.35□□□□□ -2.03
PRE1YER012W SLM2P53955 656 aa2.35□□□□□ -2.03
PRE1YER012W REX2P54964 269 aaKnown RBP2.35□□□□□ -2.03
PRE1YER012W NHP10Q03435 203 aa2.35□□□□□ -2.03
PRE1YER012W TVP15Q03860 143 aa2.35□□□□□ -2.03
PRE1YER012W API2Q04413 109 aa2.35□□□□□ -2.03
PRE1YER012W YOL019WQ08157 551 aa2.35□□□□□ -2.03
PRE1YER012W SNF8Q12483 233 aa2.35□□□□□ -2.03
PRE1YER012W SFG1Q12507 346 aa2.35□□□□□ -2.03
PRE1YER012W NOT5Q12514 560 aaPredicted RBP2.35□□□□□ -2.03
PRE1YER012W ARF1P11076 181 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W RSR1P13856 272 aa2.34□□□□□ -2.03
PRE1YER012W YEL043WP32618 956 aa2.34□□□□□ -2.03
PRE1YER012W LHP1P33399 275 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W CAF4P36130 643 aa2.34□□□□□ -2.03
PRE1YER012W ATP3P38077 311 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W LIN1P38852 340 aaPredicted RBP2.34□□□□□ -2.03
PRE1YER012W YFL051CP43552 160 aa2.34□□□□□ -2.03
PRE1YER012W LIA1P47120 325 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W RRN9P53437 365 aa2.34□□□□□ -2.03
PRE1YER012W YNR068CP53754 272 aa2.34□□□□□ -2.03
PRE1YER012W COS1P53822 381 aa2.34□□□□□ -2.03
PRE1YER012W YNL140CP53910 189 aa2.34□□□□□ -2.03
PRE1YER012W FMN1Q03778 218 aa2.34□□□□□ -2.03
PRE1YER012W YHC1Q05900 231 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W TPT1Q12272 230 aaKnown RBP2.34□□□□□ -2.03
PRE1YER012W TPK3P05986 398 aa2.33□□□□□ -2.04
PRE1YER012W UNG1P12887 359 aa2.33□□□□□ -2.04
PRE1YER012W MRPL25P23369 157 aa2.33□□□□□ -2.04
PRE1YER012W DBR1P24309 405 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W ERG9P29704 444 aa2.33□□□□□ -2.04
PRE1YER012W MKK1P32490 508 aa2.33□□□□□ -2.04
PRE1YER012W TOA2P32774 122 aa2.33□□□□□ -2.04
PRE1YER012W COX13P32799 129 aa2.33□□□□□ -2.04
PRE1YER012W SSO1P32867 290 aa2.33□□□□□ -2.04
PRE1YER012W RPC37P36121 282 aa2.33□□□□□ -2.04
PRE1YER012W AST2P39945 430 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W ATG18P43601 500 aa2.33□□□□□ -2.04
PRE1YER012W LCB3P47013 409 aa2.33□□□□□ -2.04
PRE1YER012W EMC2P47133 292 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W ABM1P47146 123 aa2.33□□□□□ -2.04
PRE1YER012W YJR141WP47172 347 aaPredicted RBP2.33□□□□□ -2.04
PRE1YER012W NAS6P50086 228 aa2.33□□□□□ -2.04
PRE1YER012W YPS5P53057 165 aa2.33□□□□□ -2.04
PRE1YER012W RPN14P53196 417 aa2.33□□□□□ -2.04
PRE1YER012W SYF2P53277 215 aaPredicted RBP2.33□□□□□ -2.04
PRE1YER012W PDR16P53860 351 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W YNL010WP53981 241 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W SPR6Q01684 191 aa2.33□□□□□ -2.04
PRE1YER012W CGI121Q03705 181 aaKnown RBP2.33□□□□□ -2.04
PRE1YER012W MIX14Q04341 121 aa2.33□□□□□ -2.04
PRE1YER012W YMR310CQ04867 317 aaPredicted RBP2.33□□□□□ -2.04
PRE1YER012W FAR8Q05040 523 aa2.33□□□□□ -2.04
PRE1YER012W YLL007CQ07799 665 aa2.33□□□□□ -2.04
PRE1YER012W YGK3Q12222 375 aaPredicted RBP2.33□□□□□ -2.04
PRE1YER012W YKL068W-AQ3E826 78 aa2.33□□□□□ -2.04
PRE1YER012W RNA1P11745 407 aaKnown RBP2.32□□□□□ -2.04
PRE1YER012W NMT1P14743 455 aa2.32□□□□□ -2.04
PRE1YER012W KRR1P25586 316 aaPredicted RBP2.32□□□□□ -2.04
PRE1YER012W CDC50P25656 391 aa2.32□□□□□ -2.04
PRE1YER012W DPH5P32469 300 aaPredicted RBP2.32□□□□□ -2.04
PRE1YER012W HSM3P38348 480 aa2.32□□□□□ -2.04
PRE1YER012W ECM34P38728 170 aa2.32□□□□□ -2.04
PRE1YER012W TRR2P38816 342 aa2.32□□□□□ -2.04
PRE1YER012W POP2P39008 433 aa2.32□□□□□ -2.04
PRE1YER012W COX14P39103 70 aa2.32□□□□□ -2.04
PRE1YER012W LYS12P40495 371 aaKnown RBP2.32□□□□□ -2.04
PRE1YER012W NOP19P53317 196 aaPredicted RBP2.32□□□□□ -2.04
PRE1YER012W VPS60Q03390 229 aa2.32□□□□□ -2.04
PRE1YER012W YMR010WQ03687 405 aa2.32□□□□□ -2.04
PRE1YER012W STE23Q06010 1027 aa2.32□□□□□ -2.04
PRE1YER012W GAS2Q06135 555 aa2.32□□□□□ -2.04
PRE1YER012W LDS2Q08218 356 aa2.32□□□□□ -2.04
PRE1YER012W PEX27Q08580 376 aa2.32□□□□□ -2.04
PRE1YER012W YDL211CQ12121 372 aa2.32□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 41.8 ms