RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C KEI1Q06346 221 aa4.48□□□□□ -1.69
CAF4YKR036C YPR127WQ06494 345 aa4.48□□□□□ -1.69
CAF4YKR036C RPS10AQ08745 105 aaPredicted RBP4.48□□□□□ -1.69
CAF4YKR036C RRP42Q12277 265 aaPredicted RBP4.48□□□□□ -1.69
CAF4YKR036C FUR4P05316 633 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C DFR1P07807 211 aaKnown RBP RIP-Chip data4.48□□□□□ -1.69not detected
CAF4YKR036C ATP5P09457 212 aa4.48□□□□□ -1.69
CAF4YKR036C HOP1P20050 605 aa4.48□□□□□ -1.69
CAF4YKR036C SEC62P21825 274 aa4.48□□□□□ -1.69
CAF4YKR036C MRP17P28778 131 aa4.48□□□□□ -1.69
CAF4YKR036C EHD3P28817 500 aa4.48□□□□□ -1.69
CAF4YKR036C GSP1P32835 219 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C GSP2P32836 220 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C SGE1P33335 543 aa4.48□□□□□ -1.69
CAF4YKR036C UBA4P38820 440 aa4.48□□□□□ -1.69
CAF4YKR036C FAA3P39002 694 aa4.48□□□□□ -1.69
CAF4YKR036C FAU1P40099 211 aa4.48□□□□□ -1.69
CAF4YKR036C ELO3P40319 345 aa4.48□□□□□ -1.69
CAF4YKR036C TIS11P47977 285 aa4.48□□□□□ -1.69
CAF4YKR036C PUS4P48567 403 aaKnown RBP4.48□□□□□ -1.69
CAF4YKR036C STD1Q02794 444 aa4.48□□□□□ -1.69
CAF4YKR036C ATC1Q04005 294 aa4.48□□□□□ -1.69
CAF4YKR036C HPF1Q05164 967 aa4.48□□□□□ -1.69
CAF4YKR036C PUN1Q06991 263 aa4.48□□□□□ -1.69
CAF4YKR036C YOR387CQ08910 206 aa4.48□□□□□ -1.69
CAF4YKR036C ICT1Q12385 394 aa4.48□□□□□ -1.69
CAF4YKR036C YNR034W-AQ3E841 98 aa4.48□□□□□ -1.69
CAF4YKR036C SRN2Q99176 213 aa4.48□□□□□ -1.69
CAF4YKR036C CDC9P04819 755 aa4.47□□□□□ -1.69
CAF4YKR036C MSF1P08425 469 aa4.47□□□□□ -1.69
CAF4YKR036C PDA1P16387 420 aaKnown RBP4.47□□□□□ -1.69
CAF4YKR036C PRE1P22141 198 aaKnown RBP4.47□□□□□ -1.69
CAF4YKR036C SHG1P38337 142 aa4.47□□□□□ -1.69
CAF4YKR036C ARO9P38840 513 aaPredicted RBP4.47□□□□□ -1.69
CAF4YKR036C EMC5P40540 141 aa4.47□□□□□ -1.69
CAF4YKR036C YJR012CP47087 207 aa4.47□□□□□ -1.69
CAF4YKR036C NUP57P48837 541 aa4.47□□□□□ -1.69
CAF4YKR036C UFD1P53044 361 aa4.47□□□□□ -1.69
CAF4YKR036C SHY1P53266 389 aa4.47□□□□□ -1.69
CAF4YKR036C FRE4P53746 719 aa4.47□□□□□ -1.69
CAF4YKR036C GIM3P53900 129 aa4.47□□□□□ -1.69
CAF4YKR036C EST3Q03096 181 aa4.47□□□□□ -1.69
CAF4YKR036C RTN1Q04947 295 aaKnown RBP4.47□□□□□ -1.69
CAF4YKR036C FRQ1Q06389 190 aa4.47□□□□□ -1.69
CAF4YKR036C YLR040CQ07988 224 aa4.47□□□□□ -1.69
CAF4YKR036C RFU1Q08003 200 aa4.47□□□□□ -1.69
CAF4YKR036C YJR112W-AQ3E743 109 aa4.47□□□□□ -1.69
CAF4YKR036C YDL085C-AQ3E7B7 68 aaKnown RBP4.47□□□□□ -1.69
CAF4YKR036C COA6Q3E846 104 aa4.47□□□□□ -1.69
CAF4YKR036C HIS1P00498 297 aaKnown RBP4.46□□□□□ -1.69
CAF4YKR036C AI3P03877 415 aa4.46□□□□□ -1.69
CAF4YKR036C HTS1P07263 546 aaKnown RBP4.46□□□□□ -1.69
CAF4YKR036C URA6P15700 204 aa4.46□□□□□ -1.69
CAF4YKR036C SPO7P18410 259 aa4.46□□□□□ -1.69
CAF4YKR036C AIM29P36154 155 aa4.46□□□□□ -1.69
CAF4YKR036C SRO77P38163 1010 aa4.46□□□□□ -1.69
CAF4YKR036C SSH1P38353 490 aaKnown RBP4.46□□□□□ -1.69
CAF4YKR036C EFM1P38732 585 aa4.46□□□□□ -1.69
CAF4YKR036C YER158CP40095 573 aa4.46□□□□□ -1.69
CAF4YKR036C FLX1P40464 311 aa4.46□□□□□ -1.69
CAF4YKR036C PAU15P40585 124 aa4.46□□□□□ -1.69
CAF4YKR036C IBA57P47158 497 aa4.46□□□□□ -1.69
CAF4YKR036C CCC1P47818 322 aa4.46□□□□□ -1.69
CAF4YKR036C AVT4P50944 713 aa4.46□□□□□ -1.69
CAF4YKR036C FLC3P53121 802 aa4.46□□□□□ -1.69
CAF4YKR036C RNH70P53331 553 aa4.46□□□□□ -1.69
CAF4YKR036C SAE3P89114 91 aa4.46□□□□□ -1.69
CAF4YKR036C YPL062WQ02781 134 aa4.46□□□□□ -1.69
CAF4YKR036C YDC1Q02896 317 aa4.46□□□□□ -1.69
CAF4YKR036C FIT1Q04433 528 aa4.46□□□□□ -1.69
CAF4YKR036C SHH3Q04487 196 aa4.46□□□□□ -1.69
CAF4YKR036C MRX9Q07349 420 aaKnown RBP4.46□□□□□ -1.69
CAF4YKR036C YDL129WQ07555 291 aa4.46□□□□□ -1.69
CAF4YKR036C YOR365CQ08844 703 aa4.46□□□□□ -1.69
CAF4YKR036C FYV7Q12247 151 aa4.46□□□□□ -1.69
CAF4YKR036C AIR2Q12476 344 aaKnown RBP4.46□□□□□ -1.69
CAF4YKR036C SKS1Q12505 502 aa4.46□□□□□ -1.69
CAF4YKR036C TMA17Q12513 150 aa4.46□□□□□ -1.69
CAF4YKR036C YIL134C-AQ45U18 67 aa4.46□□□□□ -1.69
CAF4YKR036C YKL033W-AQ86ZR7 236 aa4.46□□□□□ -1.69
CAF4YKR036C SLH1P53327 1967 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C SGA1P08019 549 aa4.46□□□□□ -1.7
CAF4YKR036C TY1A-HP0C2I4 478 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C YML003WP0CF16 290 aa4.46□□□□□ -1.7
CAF4YKR036C SCL1P21243 252 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C PPH21P23594 369 aa4.46□□□□□ -1.7
CAF4YKR036C EXG1P23776 448 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C PET18P25362 215 aa4.46□□□□□ -1.7
CAF4YKR036C SPS19P32573 292 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C SEC17P32602 292 aa4.46□□□□□ -1.7
CAF4YKR036C SOF1P33750 489 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C LOT5P34234 306 aa4.46□□□□□ -1.7
CAF4YKR036C MTH1P35198 433 aa4.46□□□□□ -1.7
CAF4YKR036C IRS4P36115 615 aaKnown RBP4.46□□□□□ -1.7
CAF4YKR036C GMH1P36125 273 aa4.46□□□□□ -1.7
CAF4YKR036C CHS7P38843 316 aa4.46□□□□□ -1.7
CAF4YKR036C PHO90P39535 881 aa4.46□□□□□ -1.7
CAF4YKR036C PRM9P39551 298 aa4.46□□□□□ -1.7
CAF4YKR036C GLC8P41818 229 aa4.46□□□□□ -1.7
CAF4YKR036C RPA34P47006 233 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms