RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W MRPL6P32904 214 aa2.48□□□□□ -2.01
SHR3YDL212W SWD2P36104 329 aaPredicted RBP2.48□□□□□ -2.01
SHR3YDL212W VPS45P38932 577 aa2.48□□□□□ -2.01
SHR3YDL212W VAB2P40003 282 aa2.48□□□□□ -2.01
SHR3YDL212W YER188WP40103 239 aa2.48□□□□□ -2.01
SHR3YDL212W YFL064CP43540 174 aa2.48□□□□□ -2.01
SHR3YDL212W LIF1P53150 421 aa2.48□□□□□ -2.01
SHR3YDL212W SWC4P53201 476 aa2.48□□□□□ -2.01
SHR3YDL212W ERV41Q04651 352 aa2.48□□□□□ -2.01
SHR3YDL212W ARC18Q05933 178 aaKnown RBP2.48□□□□□ -2.01
SHR3YDL212W MRPL23Q12487 163 aaPredicted RBP2.48□□□□□ -2.01
SHR3YDL212W IZH4Q99393 312 aa2.48□□□□□ -2.01
SHR3YDL212W IMP3P32899 183 aaPredicted RBP2.47□□□□□ -2.01
SHR3YDL212W TAZ1Q06510 381 aa2.47□□□□□ -2.01
SHR3YDL212W ATP6P00854 259 aa2.46□□□□□ -2.02
SHR3YDL212W MEK1P24719 497 aaPredicted RBP2.46□□□□□ -2.02
SHR3YDL212W MPP10P47083 593 aaKnown RBP2.46□□□□□ -2.02
SHR3YDL212W PRP24P49960 444 aaKnown RBP2.46□□□□□ -2.02
SHR3YDL212W YNL260CP53846 198 aa2.46□□□□□ -2.02
SHR3YDL212W YNL095CP53932 642 aa2.46□□□□□ -2.02
SHR3YDL212W PEX30Q06169 523 aa2.46□□□□□ -2.02
SHR3YDL212W YLR413WQ06689 675 aa2.46□□□□□ -2.02
SHR3YDL212W PRR2Q12310 699 aa2.46□□□□□ -2.02
SHR3YDL212W GAL7P08431 366 aa2.45□□□□□ -2.02
SHR3YDL212W CSM1P25651 190 aa2.45□□□□□ -2.02
SHR3YDL212W RPC37P36121 282 aa2.45□□□□□ -2.02
SHR3YDL212W MRPL3P36516 390 aa2.45□□□□□ -2.02
SHR3YDL212W MBA1P38300 278 aa2.45□□□□□ -2.02
SHR3YDL212W AGP3P43548 558 aa2.45□□□□□ -2.02
SHR3YDL212W GTO1P48239 356 aa2.45□□□□□ -2.02
SHR3YDL212W GPI8P49018 411 aa2.45□□□□□ -2.02
SHR3YDL212W YNL050CP53952 270 aa2.45□□□□□ -2.02
SHR3YDL212W EGD1Q02642 157 aaKnown RBP2.45□□□□□ -2.02
SHR3YDL212W BCP1Q06338 283 aa2.45□□□□□ -2.02
SHR3YDL212W YIL002W-AQ3E7Z5 69 aa2.45□□□□□ -2.02
SHR3YDL212W FRS2P15625 503 aaKnown RBP2.44□□□□□ -2.02
SHR3YDL212W IFM1P25038 676 aa2.44□□□□□ -2.02
SHR3YDL212W IMP1P28627 190 aa2.44□□□□□ -2.02
SHR3YDL212W YKL063CP35725 167 aa2.44□□□□□ -2.02
SHR3YDL212W YKL070WP36087 169 aa2.44□□□□□ -2.02
SHR3YDL212W HIS2P38635 335 aa2.44□□□□□ -2.02
SHR3YDL212W SHQ1P40486 507 aaPredicted RBP2.44□□□□□ -2.02
SHR3YDL212W YPL077CQ02831 240 aa2.44□□□□□ -2.02
SHR3YDL212W ASR1Q06834 288 aa2.44□□□□□ -2.02
SHR3YDL212W YPR064WQ12492 139 aa2.44□□□□□ -2.02
SHR3YDL212W TDH1P00360 332 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W RPC40P07703 335 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W PHO80P20052 293 aa2.43□□□□□ -2.02
SHR3YDL212W GCG1P32656 232 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W RPS0AP32905 252 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W PIR5P46999 287 aa2.43□□□□□ -2.02
SHR3YDL212W KEL2P50090 882 aa2.43□□□□□ -2.02
SHR3YDL212W YPT32P51996 222 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W MIG2P53035 382 aa2.43□□□□□ -2.02
SHR3YDL212W TPN1P53099 579 aa2.43□□□□□ -2.02
SHR3YDL212W MND1P53102 219 aa2.43□□□□□ -2.02
SHR3YDL212W SYF2P53277 215 aaPredicted RBP2.43□□□□□ -2.02
SHR3YDL212W BER1Q06688 274 aaKnown RBP2.43□□□□□ -2.02
SHR3YDL212W RRP42Q12277 265 aaPredicted RBP2.43□□□□□ -2.02
SHR3YDL212W TIM22Q12328 207 aa2.43□□□□□ -2.02
SHR3YDL212W FMP16Q12497 93 aa2.43□□□□□ -2.02
SHR3YDL212W SNF6P18888 332 aa2.42□□□□□ -2.02
SHR3YDL212W AVT6P40074 448 aa2.42□□□□□ -2.02
SHR3YDL212W FMP33P46998 180 aa2.42□□□□□ -2.02
SHR3YDL212W SSU72P53538 206 aaPredicted RBP2.42□□□□□ -2.02
SHR3YDL212W ALG9P53868 555 aaKnown RBP2.42□□□□□ -2.02
SHR3YDL212W CDD1Q06549 142 aa2.42□□□□□ -2.02
SHR3YDL212W YDL144CQ07589 356 aa2.42□□□□□ -2.02
SHR3YDL212W POM33Q12164 279 aa2.42□□□□□ -2.02
SHR3YDL212W YOR114WQ12219 294 aa2.42□□□□□ -2.02
SHR3YDL212W ATG5Q12380 294 aa2.42□□□□□ -2.02
SHR3YDL212W ZWF1P11412 505 aaKnown RBP2.41□□□□□ -2.02
SHR3YDL212W TFS1P14306 219 aa2.41□□□□□ -2.02
SHR3YDL212W VPS1P21576 704 aaKnown RBP2.41□□□□□ -2.02
SHR3YDL212W AEP1P32493 518 aa2.41□□□□□ -2.02
SHR3YDL212W SPT4P32914 102 aaPredicted RBP2.41□□□□□ -2.02
SHR3YDL212W PEX18P38855 283 aa2.41□□□□□ -2.02
SHR3YDL212W MEP1P40260 492 aa2.41□□□□□ -2.02
SHR3YDL212W AVT7P40501 490 aa2.41□□□□□ -2.02
SHR3YDL212W MRS2Q01926 470 aa2.41□□□□□ -2.02
SHR3YDL212W DPP1Q05521 289 aa2.41□□□□□ -2.02
SHR3YDL212W NNT1Q05874 261 aa2.41□□□□□ -2.02
SHR3YDL212W GPN3Q06543 272 aa2.41□□□□□ -2.02
SHR3YDL212W HIS3P06633 220 aa2.4□□□□□ -2.03
SHR3YDL212W CAB3P36076 571 aa2.4□□□□□ -2.03
SHR3YDL212W ATG12P38316 186 aa2.4□□□□□ -2.03
SHR3YDL212W KRE29P40026 464 aa2.4□□□□□ -2.03
SHR3YDL212W RTT105P40063 208 aa2.4□□□□□ -2.03
SHR3YDL212W YIA6P40556 373 aa2.4□□□□□ -2.03
SHR3YDL212W PAN1P32521 1480 aa2.39□□□□□ -2.03
SHR3YDL212W SSA3P09435 649 aaKnown RBP2.39□□□□□ -2.03
SHR3YDL212W OM45P16547 393 aa2.39□□□□□ -2.03
SHR3YDL212W ATG15P25641 520 aa2.39□□□□□ -2.03
SHR3YDL212W ICL1P28240 557 aaPredicted RBP2.39□□□□□ -2.03
SHR3YDL212W SUA5P32579 426 aa2.39□□□□□ -2.03
SHR3YDL212W EBP2P36049 427 aaKnown RBP2.39□□□□□ -2.03
SHR3YDL212W TRM7P38238 310 aaKnown RBP2.39□□□□□ -2.03
SHR3YDL212W YMR209CQ03648 457 aa2.39□□□□□ -2.03
SHR3YDL212W YML018CQ03730 393 aa2.39□□□□□ -2.03
SHR3YDL212W ILV1P00927 576 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 73.5 ms