RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YHR214C-DP0CX93 97 aa4.01□□□□□ -1.77
SSH4YKL124W CMK2P22517 447 aa4.01□□□□□ -1.77
SSH4YKL124W RHB1P25378 209 aa4.01□□□□□ -1.77
SSH4YKL124W HSP150P32478 413 aa4.01□□□□□ -1.77
SSH4YKL124W YPT7P32939 208 aa4.01□□□□□ -1.77
SSH4YKL124W TUL1P36096 758 aa4.01□□□□□ -1.77
SSH4YKL124W TSL1P38427 1098 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W NSG1P38837 291 aa4.01□□□□□ -1.77
SSH4YKL124W LSM1P47017 172 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W RPL6AQ02326 176 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W BUR2Q05949 395 aa4.01□□□□□ -1.77
SSH4YKL124W MUM3Q08750 479 aa4.01□□□□□ -1.77
SSH4YKL124W RRG7Q08774 242 aaPredicted RBP4.01□□□□□ -1.77
SSH4YKL124W SFM1Q12314 213 aa4.01□□□□□ -1.77
SSH4YKL124W SFG1Q12507 346 aa4.01□□□□□ -1.77
SSH4YKL124W Q0144Q9ZZW2 109 aa4.01□□□□□ -1.77
SSH4YKL124W ADE5,7P07244 802 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W ATG15P25641 520 aa4.01□□□□□ -1.77
SSH4YKL124W DGR2P32330 852 aa4.01□□□□□ -1.77
SSH4YKL124W TOD6P34219 525 aa4.01□□□□□ -1.77
SSH4YKL124W AHP1P38013 176 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W CDS1P38221 457 aa4.01□□□□□ -1.77
SSH4YKL124W FAD1P38913 306 aa4.01□□□□□ -1.77
SSH4YKL124W MLH1P38920 769 aa4.01□□□□□ -1.77
SSH4YKL124W YJL193WP39542 402 aa4.01□□□□□ -1.77
SSH4YKL124W AST2P39945 430 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W HPM1P40481 377 aa4.01□□□□□ -1.77
SSH4YKL124W YJR056CP47115 236 aa4.01□□□□□ -1.77
SSH4YKL124W ECL1P48235 211 aa4.01□□□□□ -1.77
SSH4YKL124W YGR126WP53274 230 aa4.01□□□□□ -1.77
SSH4YKL124W RRN9P53437 365 aa4.01□□□□□ -1.77
SSH4YKL124W DBP6P53734 629 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W NOG1Q02892 647 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W YDC1Q02896 317 aa4.01□□□□□ -1.77
SSH4YKL124W KAP120Q02932 1032 aa4.01□□□□□ -1.77
SSH4YKL124W RSC9Q03124 581 aa4.01□□□□□ -1.77
SSH4YKL124W MIX14Q04341 121 aa4.01□□□□□ -1.77
SSH4YKL124W GAS2Q06135 555 aa4.01□□□□□ -1.77
SSH4YKL124W VPS36Q06696 566 aa4.01□□□□□ -1.77
SSH4YKL124W AEP3Q12089 606 aa4.01□□□□□ -1.77
SSH4YKL124W RIB2Q12362 591 aaKnown RBP4.01□□□□□ -1.77
SSH4YKL124W SAC7P17121 654 aa4□□□□□ -1.77
SSH4YKL124W UGA1P17649 471 aa4□□□□□ -1.77
SSH4YKL124W PRP4P20053 465 aaKnown RBP4□□□□□ -1.77
SSH4YKL124W YIM1P28625 365 aa4□□□□□ -1.77
SSH4YKL124W PEX3P28795 441 aa4□□□□□ -1.77
SSH4YKL124W ERG9P29704 444 aa4□□□□□ -1.77
SSH4YKL124W VMA22P38784 181 aa4□□□□□ -1.77
SSH4YKL124W BIG1P38813 335 aa4□□□□□ -1.77
SSH4YKL124W XBP1P40489 647 aa4□□□□□ -1.77
SSH4YKL124W FMC1P40491 155 aa4□□□□□ -1.77
SSH4YKL124W YGR201CP42936 225 aa4□□□□□ -1.77
SSH4YKL124W ECM27P47144 725 aa4□□□□□ -1.77
SSH4YKL124W SSU72P53538 206 aaPredicted RBP4□□□□□ -1.77
SSH4YKL124W YMR265CQ03508 461 aaKnown RBP4□□□□□ -1.77
SSH4YKL124W RIM13Q03792 727 aa4□□□□□ -1.77
SSH4YKL124W BNA7Q04066 261 aa4□□□□□ -1.77
SSH4YKL124W HRI1Q05905 244 aaKnown RBP4□□□□□ -1.77
SSH4YKL124W SPO77Q06134 477 aa4□□□□□ -1.77
SSH4YKL124W YPQ2Q06328 317 aa4□□□□□ -1.77
SSH4YKL124W YPR147CQ06522 304 aaKnown RBP4□□□□□ -1.77
SSH4YKL124W YPD1Q07688 167 aa4□□□□□ -1.77
SSH4YKL124W DCI1Q08558 271 aa4□□□□□ -1.77
SSH4YKL124W YOR289WQ12012 251 aaPredicted RBP4□□□□□ -1.77
SSH4YKL124W YDL211CQ12121 372 aa4□□□□□ -1.77
SSH4YKL124W MF(ALPHA)1P01149 165 aa3.99□□□□□ -1.77
SSH4YKL124W CBP6P07253 162 aaPredicted RBP3.99□□□□□ -1.77
SSH4YKL124W MEK1P24719 497 aaPredicted RBP3.99□□□□□ -1.77
SSH4YKL124W YCP4P25349 247 aaKnown RBP3.99□□□□□ -1.77
SSH4YKL124W PET18P25362 215 aa3.99□□□□□ -1.77
SSH4YKL124W EHD3P28817 500 aa3.99□□□□□ -1.77
SSH4YKL124W LHP1P33399 275 aaKnown RBP3.99□□□□□ -1.77
SSH4YKL124W UTP11P34247 250 aaPredicted RBP3.99□□□□□ -1.77
SSH4YKL124W YKL063CP35725 167 aa3.99□□□□□ -1.77
SSH4YKL124W SOP4P39543 234 aaPredicted RBP3.99□□□□□ -1.77
SSH4YKL124W LAS21P40367 830 aa3.99□□□□□ -1.77
SSH4YKL124W SNM1P40993 198 aa3.99□□□□□ -1.77
SSH4YKL124W QRI1P43123 477 aaKnown RBP3.99□□□□□ -1.77
SSH4YKL124W LYS5P50113 272 aa3.99□□□□□ -1.77
SSH4YKL124W YNL181WP53878 407 aa3.99□□□□□ -1.77
SSH4YKL124W YNL033WP53964 284 aa3.99□□□□□ -1.77
SSH4YKL124W YNL019CP53975 284 aa3.99□□□□□ -1.77
SSH4YKL124W YDR541CQ03049 344 aa3.99□□□□□ -1.77
SSH4YKL124W SDC1Q03323 175 aa3.99□□□□□ -1.77
SSH4YKL124W INP1Q03694 420 aa3.99□□□□□ -1.77
SSH4YKL124W GIS1Q03833 894 aa3.99□□□□□ -1.77
SSH4YKL124W NDE2Q07500 545 aa3.99□□□□□ -1.77
SSH4YKL124W YLR040CQ07988 224 aa3.99□□□□□ -1.77
SSH4YKL124W THP1Q08231 455 aa3.99□□□□□ -1.77
SSH4YKL124W ENV7Q12003 364 aa3.99□□□□□ -1.77
SSH4YKL124W BAG7Q12128 409 aa3.99□□□□□ -1.77
SSH4YKL124W ATG31Q12421 196 aa3.99□□□□□ -1.77
SSH4YKL124W ATP2P00830 511 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W CDC23P16522 626 aa3.98□□□□□ -1.77
SSH4YKL124W YEF1P32622 495 aa3.98□□□□□ -1.77
SSH4YKL124W HIS7P33734 552 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W RIB1P38066 345 aa3.98□□□□□ -1.77
SSH4YKL124W TRM5P38793 499 aa3.98□□□□□ -1.77
SSH4YKL124W RCY1P39531 840 aa3.98□□□□□ -1.77
SSH4YKL124W ECM1P39715 212 aa3.98□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms