RNA–Protein interactions for RNA: YJL140W

RPB4, Transcript of RNA polymerase II subunit B32, yeast

Gene RPB4, Length 666 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPB4	YJL140W	YEL057C	P39983	233 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	BSC5	P53755	489 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	NUP49	Q02199	472 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	NAT4	Q04751	285 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	SKI7	Q08491	747 aa	Predicted RBP	4.64	□□□□□ -1.67
RPB4	YJL140W	REX3	Q12090	404 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	COX17	Q12287	69 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	TRM10	Q12400	293 aa		4.64	□□□□□ -1.67
RPB4	YJL140W	MET2	P08465	486 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	MCK1	P21965	375 aa	Known RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	BUD5	P25300	642 aa	Predicted RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	RRP7	P25368	297 aa	Predicted RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	ARO7	P32178	256 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	ARC19	P33204	171 aa	Known RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	UTP11	P34247	250 aa	Predicted RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	SRO77	P38163	1010 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	IFA38	P38286	347 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	ECM34	P38728	170 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	YLF2	P38746	405 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	SBE22	P38814	852 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	ISC1	P40015	477 aa	Known RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	SNO3	P43544	222 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	IRC5	P43610	853 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	IMD4	P50094	524 aa	Known RBP	4.63	□□□□□ -1.67
RPB4	YJL140W	BUD17	P53727	317 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	YSA1	Q01976	231 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	YDR541C	Q03049	344 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	SNZ1	Q03148	297 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	MAK3	Q03503	176 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	ARP10	Q04549	284 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	BAG7	Q12128	409 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	RBD2	Q12270	262 aa		4.63	□□□□□ -1.67
RPB4	YJL140W	CAR2	P07991	424 aa	Known RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	IDP1	P21954	428 aa	Known RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	CLB2	P24869	491 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	MSN2	P33748	704 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	TPO5	P36029	618 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	FAT1	P38225	669 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	RTC2	P38279	296 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	APD1	P38281	316 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	ARN2	P38724	620 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	IES5	P40060	125 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	UTP25	P40498	721 aa	Known RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	YJR141W	P47172	347 aa	Predicted RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	RBL2	P48606	106 aa	Known RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	NUP57	P48837	541 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	TPC1	P53257	314 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	YGR168C	P53293	376 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	PDR16	P53860	351 aa	Known RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	YPL068C	Q02749	293 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	INP1	Q03694	420 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	MGR3	Q04472	501 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	ARV1	Q06541	321 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	YPR174C	Q06616	221 aa	Predicted RBP	4.62	□□□□□ -1.67
RPB4	YJL140W	MDM36	Q06820	579 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	FDH1	Q08911	376 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	SIA1	Q12212	622 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	YRM1	Q12340	786 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	YOR032W-A	Q8TGS1	66 aa		4.62	□□□□□ -1.67
RPB4	YJL140W	REP1	P03871	373 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	YSF3	P0C074	85 aa	Predicted RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	CBS1	P14066	229 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	TFS1	P14306	219 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	AAC3	P18238	307 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	RPL24B	P24000	155 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	OAC1	P32332	324 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	NDC1	P32500	655 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	RPC34	P32910	317 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	SEC66	P33754	206 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	TEF4	P36008	412 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	FES1	P38260	290 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	GPP1	P41277	250 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	IRC6	P43615	237 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	SEH1	P53011	349 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	MPC1	P53157	130 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	RPN14	P53196	417 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	YGR067C	P53243	804 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	ATG21	Q02887	496 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	SRL4	Q03085	281 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	ABZ2	Q03266	374 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	GPI17	Q04080	534 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	ELP6	Q04868	273 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	NEJ1	Q06148	342 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	ARR3	Q06598	404 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	YDL114W	Q07530	308 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	YEH1	Q07804	573 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	MSH5	Q12175	901 aa		4.61	□□□□□ -1.67
RPB4	YJL140W	PRP46	Q12417	451 aa	Predicted RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	PAR32	Q12515	295 aa	Known RBP	4.61	□□□□□ -1.67
RPB4	YJL140W	YOL163W	P0CF20	169 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
RPB4	YJL140W	SNF6	P18888	332 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	YCR100C	P25606	316 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	KRE6	P32486	720 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	MTC7	P32633	139 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	TRR2	P38816	342 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	ECO1	P43605	281 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	MDV1	P47025	714 aa		4.6	□□□□□ -1.67
RPB4	YJL140W	RPS12	P48589	143 aa	Known RBP	4.6	□□□□□ -1.67
RPB4	YJL140W	CWC23	P52868	283 aa	Predicted RBP	4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 95.6 ms