RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C YOR352WQ08816 343 aa3.26□□□□□ -1.89
SSM4YIL030C TY1A-DR4O74302 440 aa3.25□□□□□ -1.89
SSM4YIL030C TDH2P00358 332 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C MET3P08536 511 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-AP0CX57 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-PR1P0CX58 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-ORP0CX59 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-PR2P0CX60 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-DR5P0CX65 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-ER2P0CX66 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-GR3P0CX67 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-LR1P0CX68 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-MR2P0CX69 440 aa3.25□□□□□ -1.89
SSM4YIL030C MER1P16523 270 aa3.25□□□□□ -1.89
SSM4YIL030C TRX3P25372 127 aa3.25□□□□□ -1.89
SSM4YIL030C TMA19P35691 167 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C YOR062CP36025 268 aa3.25□□□□□ -1.89
SSM4YIL030C MDM31P38880 579 aa3.25□□□□□ -1.89
SSM4YIL030C YIL166CP40445 542 aa3.25□□□□□ -1.89
SSM4YIL030C SYS1P41544 203 aa3.25□□□□□ -1.89
SSM4YIL030C RMD8P43620 662 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-JR2P47099 440 aa3.25□□□□□ -1.89
SSM4YIL030C ACF4P47129 309 aa3.25□□□□□ -1.89
SSM4YIL030C FRE4P53746 719 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-DR1Q03856 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-ML1Q04706 440 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C LUC7Q07508 261 aaPredicted RBP3.25□□□□□ -1.89
SSM4YIL030C YTM1Q12024 460 aaPredicted RBP3.25□□□□□ -1.89
SSM4YIL030C TY1A-BRQ12217 440 aa3.25□□□□□ -1.89
SSM4YIL030C YOP1Q12402 180 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-NL2Q12470 440 aa3.25□□□□□ -1.89
SSM4YIL030C TY1A-GR2Q12485 440 aa3.25□□□□□ -1.89
SSM4YIL030C GAL1P04385 528 aa3.25□□□□□ -1.89
SSM4YIL030C KAR1P11927 433 aa3.25□□□□□ -1.89
SSM4YIL030C SBA1P28707 216 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C PEX4P29340 183 aa3.25□□□□□ -1.89
SSM4YIL030C PDC2P32896 925 aa3.25□□□□□ -1.89
SSM4YIL030C MRPL40P36534 297 aa3.25□□□□□ -1.89
SSM4YIL030C SLM6P38343 150 aa3.25□□□□□ -1.89
SSM4YIL030C PNT1P38969 423 aa3.25□□□□□ -1.89
SSM4YIL030C DBP6P53734 629 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C APM1Q00776 475 aaPredicted RBP3.25□□□□□ -1.89
SSM4YIL030C TPP1Q03796 238 aa3.25□□□□□ -1.89
SSM4YIL030C YOS9Q99220 542 aa3.25□□□□□ -1.89
SSM4YIL030C CDC21P06785 304 aa3.25□□□□□ -1.89
SSM4YIL030C ERD1P16151 362 aa3.25□□□□□ -1.89
SSM4YIL030C SAR1P20606 190 aaKnown RBP3.25□□□□□ -1.89
SSM4YIL030C TUL1P36096 758 aa3.25□□□□□ -1.89
SSM4YIL030C TAD2P47058 250 aa3.25□□□□□ -1.89
SSM4YIL030C YPQ1Q12010 308 aa3.25□□□□□ -1.89
SSM4YIL030C SNF8Q12483 233 aa3.25□□□□□ -1.89
SSM4YIL030C HTS1P07263 546 aaKnown RBP3.24□□□□□ -1.89
SSM4YIL030C YCP4P25349 247 aaKnown RBP3.24□□□□□ -1.89
SSM4YIL030C AFG1P32317 509 aa3.24□□□□□ -1.89
SSM4YIL030C MKS1P34072 584 aa3.24□□□□□ -1.89
SSM4YIL030C DCW1P36091 449 aa3.24□□□□□ -1.89
SSM4YIL030C APE3P37302 537 aaKnown RBP3.24□□□□□ -1.89
SSM4YIL030C SOL3P38858 249 aa3.24□□□□□ -1.89
SSM4YIL030C PHO23P50947 330 aa3.24□□□□□ -1.89
SSM4YIL030C YGL185CP53100 379 aa3.24□□□□□ -1.89
SSM4YIL030C OKP1P53298 406 aa3.24□□□□□ -1.89
SSM4YIL030C YNR065CP53751 1116 aa3.24□□□□□ -1.89
SSM4YIL030C TRM13Q12383 476 aa3.24□□□□□ -1.89
SSM4YIL030C RRI1Q12468 440 aa3.24□□□□□ -1.89
SSM4YIL030C SUA5P32579 426 aa3.24□□□□□ -1.89
SSM4YIL030C APT2P36973 181 aa3.24□□□□□ -1.89
SSM4YIL030C ANS1P38832 159 aa3.24□□□□□ -1.89
SSM4YIL030C YIR016WP40572 265 aa3.24□□□□□ -1.89
SSM4YIL030C YJR124CP47159 448 aa3.24□□□□□ -1.89
SSM4YIL030C SSN8P47821 323 aa3.24□□□□□ -1.89
SSM4YIL030C RTS3P53289 263 aa3.24□□□□□ -1.89
SSM4YIL030C OPT2Q06593 877 aa3.24□□□□□ -1.89
SSM4YIL030C PML1Q07930 204 aaPredicted RBP3.24□□□□□ -1.89
SSM4YIL030C PCL9Q12477 304 aa3.24□□□□□ -1.89
SSM4YIL030C APN1P22936 367 aa3.24□□□□□ -1.89
SSM4YIL030C MRPS9P38120 278 aa3.24□□□□□ -1.89
SSM4YIL030C COX15P40086 486 aa3.24□□□□□ -1.89
SSM4YIL030C YNL143CP53908 130 aa3.24□□□□□ -1.89
SSM4YIL030C GPI15P53961 229 aa3.24□□□□□ -1.89
SSM4YIL030C NNT1Q05874 261 aa3.24□□□□□ -1.89
SSM4YIL030C MCH4Q08268 501 aa3.24□□□□□ -1.89
SSM4YIL030C RTK1Q12100 620 aaPredicted RBP3.24□□□□□ -1.89
SSM4YIL030C SUL2Q12325 893 aa3.24□□□□□ -1.89
SSM4YIL030C RAS2P01120 322 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C RPL31AP0C2H8 113 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C RPL31BP0C2H9 113 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C PUT3P25502 979 aaPredicted RBP3.23□□□□□ -1.89
SSM4YIL030C DCC1P25559 380 aa3.23□□□□□ -1.89
SSM4YIL030C POT1P27796 417 aaKnown RBP RIP-Chip data3.23□□□□□ -1.89not detected
SSM4YIL030C TRS65P32893 560 aa3.23□□□□□ -1.89
SSM4YIL030C PRS2P38620 318 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C ARO9P38840 513 aaPredicted RBP3.23□□□□□ -1.89
SSM4YIL030C LSM5P40089 93 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C YGR017WP53210 297 aa3.23□□□□□ -1.89
SSM4YIL030C VOA1P53262 265 aa3.23□□□□□ -1.89
SSM4YIL030C HOL1P53389 586 aa3.23□□□□□ -1.89
SSM4YIL030C SNZ1Q03148 297 aa3.23□□□□□ -1.89
SSM4YIL030C SSY1Q03770 852 aa3.23□□□□□ -1.89
SSM4YIL030C YLR225CQ05948 407 aaKnown RBP3.23□□□□□ -1.89
SSM4YIL030C GPN3Q06543 272 aa3.23□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 777.9 ms