RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YDL109CQ12103 647 aa1.21□□□□□ -2.22
VPS54YDR027C ERP3Q12403 225 aa1.21□□□□□ -2.22
VPS54YDR027C UBA3Q99344 299 aa1.21□□□□□ -2.22
VPS54YDR027C RIF1P29539 1916 aa1.2□□□□□ -2.22
VPS54YDR027C PRB1P09232 635 aa1.2□□□□□ -2.22
VPS54YDR027C MSS116P15424 664 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C PMT2P31382 759 aa1.2□□□□□ -2.22
VPS54YDR027C RAD23P32628 398 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C AIM10P39965 576 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C HAC1P41546 238 aa1.2□□□□□ -2.22
VPS54YDR027C ECM11Q04110 302 aa1.2□□□□□ -2.22
VPS54YDR027C YDL114WQ07530 308 aa1.2□□□□□ -2.22
VPS54YDR027C DNL4Q08387 944 aaPredicted RBP1.2□□□□□ -2.22
VPS54YDR027C YPQ1Q12010 308 aa1.2□□□□□ -2.22
VPS54YDR027C RPL23AP0CX41 137 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C RPL23BP0CX42 137 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C RPL16AP26784 199 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C UTP18P40362 594 aaPredicted RBP1.2□□□□□ -2.22
VPS54YDR027C INA22P40576 216 aa1.2□□□□□ -2.22
VPS54YDR027C CDC40P40968 455 aaPredicted RBP1.2□□□□□ -2.22
VPS54YDR027C YFH7P43591 353 aa1.2□□□□□ -2.22
VPS54YDR027C ALF1P53904 254 aa1.2□□□□□ -2.22
VPS54YDR027C SPO19Q03029 223 aa1.2□□□□□ -2.22
VPS54YDR027C TRM82Q03774 444 aa1.2□□□□□ -2.22
VPS54YDR027C RVB1Q03940 463 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C YLR413WQ06689 675 aa1.2□□□□□ -2.22
VPS54YDR027C YOR376WQ08900 122 aa1.2□□□□□ -2.22
VPS54YDR027C FRE8Q12209 686 aa1.2□□□□□ -2.22
VPS54YDR027C YPR1Q12458 312 aa1.2□□□□□ -2.22
VPS54YDR027C HTZ1Q12692 134 aaKnown RBP1.2□□□□□ -2.22
VPS54YDR027C NAG1Q8TGN9 163 aa1.2□□□□□ -2.22
VPS54YDR027C SAL1D6W196 494 aa1.19□□□□□ -2.22
VPS54YDR027C RPS18AP0CX55 146 aaKnown RBP1.19□□□□□ -2.22
VPS54YDR027C RPS18BP0CX56 146 aaPredicted RBP1.19□□□□□ -2.22
VPS54YDR027C SPS100P13130 326 aa1.19□□□□□ -2.22
VPS54YDR027C OM45P16547 393 aa1.19□□□□□ -2.22
VPS54YDR027C UGA1P17649 471 aa1.19□□□□□ -2.22
VPS54YDR027C ERG9P29704 444 aa1.19□□□□□ -2.22
VPS54YDR027C RCK2P38623 610 aa1.19□□□□□ -2.22
VPS54YDR027C MIG3P39943 394 aa1.19□□□□□ -2.22
VPS54YDR027C OXA1P39952 402 aa1.19□□□□□ -2.22
VPS54YDR027C UTP25P40498 721 aaKnown RBP1.19□□□□□ -2.22
VPS54YDR027C YFR057WP43625 151 aa1.19□□□□□ -2.22
VPS54YDR027C TAF6P53040 516 aa1.19□□□□□ -2.22
VPS54YDR027C VOA1P53262 265 aa1.19□□□□□ -2.22
VPS54YDR027C VAC7P53950 1165 aa1.19□□□□□ -2.22
VPS54YDR027C ATP16Q12165 160 aa1.19□□□□□ -2.22
VPS54YDR027C JID1Q12350 301 aa1.19□□□□□ -2.22
VPS54YDR027C RPN6Q12377 434 aa1.19□□□□□ -2.22
VPS54YDR027C SAC3P46674 1301 aa1.19□□□□□ -2.22
VPS54YDR027C HEM4P06174 275 aa1.19□□□□□ -2.22
VPS54YDR027C MIR1P23641 311 aaKnown RBP1.19□□□□□ -2.22
VPS54YDR027C GPI12P23797 304 aa1.19□□□□□ -2.22
VPS54YDR027C YKL070WP36087 169 aa1.19□□□□□ -2.22
VPS54YDR027C DBP7P36120 742 aaKnown RBP1.19□□□□□ -2.22
VPS54YDR027C MMS21P38632 267 aa1.19□□□□□ -2.22
VPS54YDR027C PFS1P38872 237 aa1.19□□□□□ -2.22
VPS54YDR027C YER186CP40101 306 aa1.19□□□□□ -2.22
VPS54YDR027C CLD1P53264 445 aa1.19□□□□□ -2.22
VPS54YDR027C YNL050CP53952 270 aa1.19□□□□□ -2.22
VPS54YDR027C EGD1Q02642 157 aaKnown RBP1.19□□□□□ -2.22
VPS54YDR027C YPL080CQ02826 108 aa1.19□□□□□ -2.22
VPS54YDR027C ERV41Q04651 352 aa1.19□□□□□ -2.22
VPS54YDR027C DDC1Q08949 612 aa1.19□□□□□ -2.22
VPS54YDR027C YPS3Q12303 508 aa1.19□□□□□ -2.22
VPS54YDR027C APC2Q12440 853 aa1.19□□□□□ -2.22
VPS54YDR027C DCP1Q12517 231 aaPredicted RBP1.19□□□□□ -2.22
VPS54YDR027C RPB5P20434 215 aa1.18□□□□□ -2.22
VPS54YDR027C AAT2P23542 418 aaKnown RBP1.18□□□□□ -2.22
VPS54YDR027C DCC1P25559 380 aa1.18□□□□□ -2.22
VPS54YDR027C YKR015CP36111 568 aa1.18□□□□□ -2.22
VPS54YDR027C BMT2P38278 337 aa1.18□□□□□ -2.22
VPS54YDR027C TIM17P39515 158 aa1.18□□□□□ -2.22
VPS54YDR027C YNL208WP40159 199 aaKnown RBP1.18□□□□□ -2.22
VPS54YDR027C SLM1P40485 686 aa1.18□□□□□ -2.22
VPS54YDR027C DFG10P40526 253 aa1.18□□□□□ -2.22
VPS54YDR027C YNL320WP42840 284 aa1.18□□□□□ -2.22
VPS54YDR027C LOH1P47055 219 aa1.18□□□□□ -2.22
VPS54YDR027C BIO3P50277 480 aa1.18□□□□□ -2.22
VPS54YDR027C MND1P53102 219 aa1.18□□□□□ -2.22
VPS54YDR027C BIO4P53630 237 aa1.18□□□□□ -2.22
VPS54YDR027C LAP3Q01532 483 aaKnown RBP RIP-Chip data1.18□□□□□ -2.22not detected
VPS54YDR027C SKI8Q02793 397 aaPredicted RBP1.18□□□□□ -2.22
VPS54YDR027C YMR321CQ04898 105 aa1.18□□□□□ -2.22
VPS54YDR027C CMS1Q07897 291 aaKnown RBP1.18□□□□□ -2.22
VPS54YDR027C FMP16Q12497 93 aa1.18□□□□□ -2.22
VPS54YDR027C STE2D6VTK4 431 aa1.18□□□□□ -2.22
VPS54YDR027C CMK2P22517 447 aa1.18□□□□□ -2.22
VPS54YDR027C MEK1P24719 497 aaPredicted RBP1.18□□□□□ -2.22
VPS54YDR027C RBK1P25332 333 aa1.18□□□□□ -2.22
VPS54YDR027C RPL5P26321 297 aaKnown RBP1.18□□□□□ -2.22
VPS54YDR027C VMA5P31412 392 aaKnown RBP1.18□□□□□ -2.22
VPS54YDR027C ECT1P33412 323 aa1.18□□□□□ -2.22
VPS54YDR027C MRPS9P38120 278 aa1.18□□□□□ -2.22
VPS54YDR027C RPN14P53196 417 aa1.18□□□□□ -2.22
VPS54YDR027C OKP1P53298 406 aa1.18□□□□□ -2.22
VPS54YDR027C MKC7P53379 596 aa1.18□□□□□ -2.22
VPS54YDR027C PRP38Q00723 242 aaPredicted RBP1.18□□□□□ -2.22
VPS54YDR027C SCS7Q03529 384 aa1.18□□□□□ -2.22
VPS54YDR027C YMR010WQ03687 405 aa1.18□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 89.5 ms