RNA–Protein interactions for RNA: snR55

snR55, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR55, Length 98 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR55	snR55	CAB3	P36076	571 aa		0.25	□□□□□ -2.37
snR55	snR55	DSE1	P40077	573 aa		0.25	□□□□□ -2.37
snR55	snR55	TCB2	P48231	1178 aa		0.25	□□□□□ -2.37
snR55	snR55	SDS23	P53172	527 aa		0.25	□□□□□ -2.37
snR55	snR55	TPC1	P53257	314 aa		0.25	□□□□□ -2.37
snR55	snR55	RTS3	P53289	263 aa		0.25	□□□□□ -2.37
snR55	snR55	UAF30	Q08747	228 aa		0.25	□□□□□ -2.37
snR55	snR55	RRI2	Q12348	645 aa		0.25	□□□□□ -2.37
snR55	snR55	RPL26A	P05743	127 aa	Known RBP	0.24	□□□□□ -2.37
snR55	snR55	VAM7	P32912	316 aa		0.24	□□□□□ -2.37
snR55	snR55	NOC2	P39744	710 aa	Known RBP	0.24	□□□□□ -2.37
snR55	snR55	LCB2	P40970	561 aa		0.24	□□□□□ -2.37
snR55	snR55	EPL1	P43572	832 aa		0.24	□□□□□ -2.37
snR55	snR55	UFD1	P53044	361 aa		0.24	□□□□□ -2.37
snR55	snR55	LSG1	P53145	640 aa	Known RBP	0.24	□□□□□ -2.37
snR55	snR55	RPL26B	P53221	127 aa	Known RBP	0.24	□□□□□ -2.37
snR55	snR55	AQR1	P53943	586 aa		0.24	□□□□□ -2.37
snR55	snR55	NDL1	Q06568	189 aa		0.24	□□□□□ -2.37
snR55	snR55	TIM22	Q12328	207 aa		0.24	□□□□□ -2.37
snR55	snR55	TRM10	Q12400	293 aa		0.24	□□□□□ -2.37
snR55	snR55	ADK2	P26364	225 aa		0.23	□□□□□ -2.37
snR55	snR55	SMF2	P38778	549 aa		0.23	□□□□□ -2.37
snR55	snR55	MEH1	Q02205	184 aa		0.23	□□□□□ -2.37
snR55	snR55	TY3A-G	Q12173	290 aa		0.23	□□□□□ -2.37
snR55	snR55	TY3A-I	Q99219	290 aa		0.23	□□□□□ -2.37
snR55	snR55	CPR2	P23285	205 aa		0.22	□□□□□ -2.37
snR55	snR55	CSE1	P33307	960 aa		0.22	□□□□□ -2.37
snR55	snR55	YKL187C	P34231	750 aa		0.22	□□□□□ -2.37
snR55	snR55	PEX5	P35056	612 aa		0.22	□□□□□ -2.37
snR55	snR55	SPP381	P38282	291 aa	Predicted RBP	0.22	□□□□□ -2.37
snR55	snR55	YHR182W	P38870	785 aa		0.22	□□□□□ -2.37
snR55	snR55	YDR541C	Q03049	344 aa		0.22	□□□□□ -2.37
snR55	snR55	SUE1	Q06524	206 aa		0.22	□□□□□ -2.37
snR55	snR55	MIM1	Q08176	113 aa		0.22	□□□□□ -2.37
snR55	snR55	SFI1	Q12369	946 aa		0.22	□□□□□ -2.37
snR55	snR55	RPN6	Q12377	434 aa		0.22	□□□□□ -2.37
snR55	snR55	YAK1	P14680	807 aa		0.21	□□□□□ -2.38
snR55	snR55	PCH2	P38126	564 aa		0.21	□□□□□ -2.38
snR55	snR55	MNL1	P38888	796 aa		0.21	□□□□□ -2.38
snR55	snR55	NUP57	P48837	541 aa		0.21	□□□□□ -2.38
snR55	snR55	EBS1	Q03466	884 aa	Known RBP	0.21	□□□□□ -2.38
snR55	snR55	RRB1	Q04225	511 aa	Known RBP	0.21	□□□□□ -2.38
snR55	snR55	ERB1	Q04660	807 aa	Known RBP	0.21	□□□□□ -2.38
snR55	snR55	ERP3	Q12403	225 aa		0.21	□□□□□ -2.38
snR55	snR55	HIS3	P06633	220 aa		0.2	□□□□□ -2.38
snR55	snR55	SRP72	P38688	640 aa	Known RBP	0.2	□□□□□ -2.38
snR55	snR55	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.2	□□□□□ -2.38	not detected
snR55	snR55	YPR078C	Q06813	372 aa		0.2	□□□□□ -2.38
snR55	snR55	YPL150W	Q12152	901 aa		0.2	□□□□□ -2.38
snR55	snR55	DCP1	Q12517	231 aa	Predicted RBP	0.2	□□□□□ -2.38
snR55	snR55	PDE2	P06776	526 aa		0.19	□□□□□ -2.38
snR55	snR55	MMS21	P38632	267 aa		0.19	□□□□□ -2.38
snR55	snR55	ATG7	P38862	630 aa		0.19	□□□□□ -2.38
snR55	snR55	NDE1	P40215	560 aa		0.19	□□□□□ -2.38
snR55	snR55	YNL320W	P42840	284 aa		0.19	□□□□□ -2.38
snR55	snR55	PMT4	P46971	762 aa		0.19	□□□□□ -2.38
snR55	snR55	MDM1	Q01846	1127 aa		0.19	□□□□□ -2.38
snR55	snR55	INM2	Q05533	292 aa		0.19	□□□□□ -2.38
snR55	snR55	YOL075C	Q08234	1294 aa		0.19	□□□□□ -2.38
snR55	snR55	PRR2	Q12310	699 aa		0.19	□□□□□ -2.38
snR55	snR55	MHP1	P43638	1398 aa		0.19	□□□□□ -2.38
snR55	snR55	EDC2	P40023	145 aa	Predicted RBP	0.18	□□□□□ -2.38
snR55	snR55	LYS12	P40495	371 aa	Known RBP	0.18	□□□□□ -2.38
snR55	snR55	LST7	P53237	242 aa		0.18	□□□□□ -2.38
snR55	snR55	YLR287C	Q05881	355 aa		0.18	□□□□□ -2.38
snR55	snR55	SPH1	Q06160	661 aa		0.18	□□□□□ -2.38
snR55	snR55	IPK1	Q06667	281 aa		0.18	□□□□□ -2.38
snR55	snR55	ISA2	Q12425	185 aa		0.18	□□□□□ -2.38
snR55	snR55	CBP2	P03874	630 aa	Predicted RBP	0.17	□□□□□ -2.38
snR55	snR55	YHL044W	P38727	235 aa		0.17	□□□□□ -2.38
snR55	snR55	YGR111W	P53265	400 aa		0.17	□□□□□ -2.38
snR55	snR55	OSH6	Q02201	448 aa		0.17	□□□□□ -2.38
snR55	snR55	CTS2	Q06350	511 aa		0.17	□□□□□ -2.38
snR55	snR55	RPS16A	P0CX51	143 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	RPS16B	P0CX52	143 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	ZWF1	P11412	505 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	DPM1	P14020	267 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	KAP104	P38217	918 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	LCP5	P40079	357 aa	Predicted RBP	0.16	□□□□□ -2.38
snR55	snR55	RET3	P53600	189 aa		0.16	□□□□□ -2.38
snR55	snR55	CSM3	Q04659	317 aa		0.16	□□□□□ -2.38
snR55	snR55	RTC5	Q12108	567 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	RPN5	Q12250	445 aa	Known RBP	0.16	□□□□□ -2.38
snR55	snR55	DBR1	P24309	405 aa	Known RBP	0.15	□□□□□ -2.39
snR55	snR55	EFB1	P32471	206 aa	Known RBP	0.15	□□□□□ -2.39
snR55	snR55	TRM7	P38238	310 aa	Known RBP	0.15	□□□□□ -2.39
snR55	snR55	ZIM17	P42844	174 aa		0.15	□□□□□ -2.39
snR55	snR55	YJR141W	P47172	347 aa	Predicted RBP	0.15	□□□□□ -2.39
snR55	snR55	COS6	P53344	381 aa		0.15	□□□□□ -2.39
snR55	snR55	SLM2	P53955	656 aa		0.15	□□□□□ -2.39
snR55	snR55	AGC1	Q12482	902 aa		0.15	□□□□□ -2.39
snR55	snR55	RRT12	P25381	491 aa		0.14	□□□□□ -2.39
snR55	snR55	MRPS5	P33759	307 aa		0.14	□□□□□ -2.39
snR55	snR55	MND1	P53102	219 aa		0.14	□□□□□ -2.39
snR55	snR55	RSC1	P53236	928 aa		0.14	□□□□□ -2.39
snR55	snR55	ALG9	P53868	555 aa	Known RBP	0.14	□□□□□ -2.39
snR55	snR55	GRH1	Q04410	372 aa	Known RBP	0.14	□□□□□ -2.39
snR55	snR55	DCI1	Q08558	271 aa		0.14	□□□□□ -2.39
snR55	snR55	SCM3	Q12334	223 aa		0.14	□□□□□ -2.39
snR55	snR55	EMC6	Q12431	108 aa		0.14	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 30.9 ms