RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YHR122WP38829 231 aa1.25□□□□□ -2.21
VPS54YDR027C YDR089WP38966 869 aa1.25□□□□□ -2.21
VPS54YDR027C LCP5P40079 357 aaPredicted RBP1.25□□□□□ -2.21
VPS54YDR027C MRM2P53123 320 aa1.25□□□□□ -2.21
VPS54YDR027C MTM1P53320 366 aa1.25□□□□□ -2.21
VPS54YDR027C MDM36Q06820 579 aa1.25□□□□□ -2.21
VPS54YDR027C RTC5Q12108 567 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C CEX1Q12453 761 aa1.25□□□□□ -2.21
VPS54YDR027C IPP1P00817 287 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C RPS8AP0CX39 200 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C RPS8BP0CX40 200 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C GAL3P13045 520 aa1.25□□□□□ -2.21
VPS54YDR027C CKI1P20485 582 aa1.25□□□□□ -2.21
VPS54YDR027C HMX1P32339 317 aa1.25□□□□□ -2.21
VPS54YDR027C TIR2P33890 251 aa1.25□□□□□ -2.21
VPS54YDR027C YBL028CP38202 106 aa1.25□□□□□ -2.21
VPS54YDR027C ATG7P38862 630 aa1.25□□□□□ -2.21
VPS54YDR027C COX14P39103 70 aa1.25□□□□□ -2.21
VPS54YDR027C PCL7P40186 285 aa1.25□□□□□ -2.21
VPS54YDR027C AIM20P40451 204 aa1.25□□□□□ -2.21
VPS54YDR027C CTK3P46963 296 aaPredicted RBP1.25□□□□□ -2.21
VPS54YDR027C LCB3P47013 409 aa1.25□□□□□ -2.21
VPS54YDR027C YJR085CP47131 105 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C NUP116Q02630 1113 aa1.25□□□□□ -2.21
VPS54YDR027C VTI1Q04338 217 aa1.25□□□□□ -2.21
VPS54YDR027C ARR1Q06596 294 aa1.25□□□□□ -2.21
VPS54YDR027C CBP2P03874 630 aaPredicted RBP1.24□□□□□ -2.21
VPS54YDR027C CDC37P06101 506 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C FAR1P21268 830 aa1.24□□□□□ -2.21
VPS54YDR027C VAM7P32912 316 aa1.24□□□□□ -2.21
VPS54YDR027C YHK8P38776 514 aa1.24□□□□□ -2.21
VPS54YDR027C SEC9P40357 651 aa1.24□□□□□ -2.21
VPS54YDR027C YIL029CP40538 142 aa1.24□□□□□ -2.21
VPS54YDR027C YGL114WP53134 725 aa1.24□□□□□ -2.21
VPS54YDR027C YNL146WP53906 100 aa1.24□□□□□ -2.21
VPS54YDR027C SUR7P54003 302 aa1.24□□□□□ -2.21
VPS54YDR027C TDA1Q03533 586 aa1.24□□□□□ -2.21
VPS54YDR027C YBL111CQ3E7Y5 667 aa1.24□□□□□ -2.21
VPS54YDR027C YOR338WQ99326 363 aa1.24□□□□□ -2.21
VPS54YDR027C RPS14AP06367 137 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C RNR2P09938 399 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C CIN8P27895 1000 aa1.24□□□□□ -2.21
VPS54YDR027C POP5P28005 173 aa1.24□□□□□ -2.21
VPS54YDR027C MRPS5P33759 307 aa1.24□□□□□ -2.21
VPS54YDR027C MRPL10P36520 322 aa1.24□□□□□ -2.21
VPS54YDR027C TVP23P38962 199 aa1.24□□□□□ -2.21
VPS54YDR027C RPS14BP39516 138 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C PRP39P39682 629 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C SSO2P39926 295 aa1.24□□□□□ -2.21
VPS54YDR027C YFR018CP43599 363 aa1.24□□□□□ -2.21
VPS54YDR027C YHC3P47040 408 aa1.24□□□□□ -2.21
VPS54YDR027C MSC3Q05812 728 aa1.24□□□□□ -2.21
VPS54YDR027C CUR1Q06469 252 aa1.24□□□□□ -2.21
VPS54YDR027C SHS1Q07657 551 aa1.24□□□□□ -2.21
VPS54YDR027C GLE1Q12315 538 aa1.24□□□□□ -2.21
VPS54YDR027C EAF3Q12432 401 aa1.24□□□□□ -2.21
VPS54YDR027C DET1Q99288 334 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C DUR1,2P32528 1835 aaKnown RBP1.24□□□□□ -2.21
VPS54YDR027C MAS2P11914 482 aa1.23□□□□□ -2.21
VPS54YDR027C DBP3P20447 523 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C UTR1P21373 530 aa1.23□□□□□ -2.21
VPS54YDR027C MXR2P25566 168 aa1.23□□□□□ -2.21
VPS54YDR027C EFB1P32471 206 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C SSE1P32589 693 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C PPQ1P32945 549 aa1.23□□□□□ -2.21
VPS54YDR027C HEM14P40012 539 aa1.23□□□□□ -2.21
VPS54YDR027C SEC27P41811 889 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C TRM112P53738 135 aaPredicted RBP1.23□□□□□ -2.21
VPS54YDR027C ERV25P54837 211 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C IRC4Q03036 179 aa1.23□□□□□ -2.21
VPS54YDR027C NAT4Q04751 285 aa1.23□□□□□ -2.21
VPS54YDR027C YLH47Q06493 454 aa1.23□□□□□ -2.21
VPS54YDR027C ALE1Q08548 619 aa1.23□□□□□ -2.21
VPS54YDR027C YLR422WQ06409 1932 aa1.23□□□□□ -2.21
VPS54YDR027C RAD1P06777 1100 aa1.23□□□□□ -2.21
VPS54YDR027C YLL053CP0CD98 152 aa1.23□□□□□ -2.21
VPS54YDR027C NAM2P11325 894 aa1.23□□□□□ -2.21
VPS54YDR027C CHA1P25379 360 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C YPS1P32329 569 aa1.23□□□□□ -2.21
VPS54YDR027C MRPL40P36534 297 aa1.23□□□□□ -2.21
VPS54YDR027C RTC2P38279 296 aa1.23□□□□□ -2.21
VPS54YDR027C SWC5P38326 303 aa1.23□□□□□ -2.21
VPS54YDR027C END3P39013 349 aa1.23□□□□□ -2.21
VPS54YDR027C DBP6P53734 629 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C CWC25P53854 179 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C YLR297WQ05899 129 aa1.23□□□□□ -2.21
VPS54YDR027C MFG1Q07684 458 aa1.23□□□□□ -2.21
VPS54YDR027C APC5Q08683 685 aa1.23□□□□□ -2.21
VPS54YDR027C YRA1Q12159 226 aaKnown RBP1.23□□□□□ -2.21
VPS54YDR027C RPC40P07703 335 aaKnown RBP1.22□□□□□ -2.21
VPS54YDR027C GCD2P12754 651 aaPredicted RBP1.22□□□□□ -2.21
VPS54YDR027C PUT4P15380 627 aa1.22□□□□□ -2.21
VPS54YDR027C CSE2P33308 149 aa1.22□□□□□ -2.21
VPS54YDR027C SPO23P33757 523 aa1.22□□□□□ -2.21
VPS54YDR027C CAB3P36076 571 aa1.22□□□□□ -2.21
VPS54YDR027C IST2P38250 946 aa1.22□□□□□ -2.21
VPS54YDR027C MNN9P39107 395 aaKnown RBP1.22□□□□□ -2.21
VPS54YDR027C EGT2P42835 1041 aa1.22□□□□□ -2.21
VPS54YDR027C YCH1P42937 148 aa1.22□□□□□ -2.21
VPS54YDR027C GCD14P46959 383 aaPredicted RBP1.22□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 35.5 ms