RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROD1	YOR018W	EDS1	P38073	919 aa		4.98	□□□□□ -1.61
ROD1	YOR018W	MPP10	P47083	593 aa	Known RBP	4.98	□□□□□ -1.61
ROD1	YOR018W	ENV9	Q08651	330 aa		4.98	□□□□□ -1.61
ROD1	YOR018W	PRS1	P32895	427 aa	Known RBP	4.98	□□□□□ -1.61
ROD1	YOR018W	ENP1	P38333	483 aa	Known RBP	4.98	□□□□□ -1.61
ROD1	YOR018W	DMA2	P53924	522 aa		4.97	□□□□□ -1.61
ROD1	YOR018W	SLM3	Q12093	417 aa		4.97	□□□□□ -1.61
ROD1	YOR018W	TAP42	Q04372	366 aa		4.97	□□□□□ -1.61
ROD1	YOR018W	YDL144C	Q07589	356 aa		4.96	□□□□□ -1.62
ROD1	YOR018W	RRP5	Q05022	1729 aa	Known RBP	4.96	□□□□□ -1.62
ROD1	YOR018W	XKS1	P42826	600 aa		4.95	□□□□□ -1.62
ROD1	YOR018W	THI22	Q06490	572 aa		4.95	□□□□□ -1.62
ROD1	YOR018W	APC1	P53886	1748 aa		4.95	□□□□□ -1.62
ROD1	YOR018W	SPB4	P25808	606 aa	Predicted RBP	4.94	□□□□□ -1.62
ROD1	YOR018W	RTF1	P53064	558 aa		4.94	□□□□□ -1.62
ROD1	YOR018W	SLX5	P32828	619 aa	Known RBP	4.94	□□□□□ -1.62
ROD1	YOR018W	RTR1	P40084	226 aa	Predicted RBP	4.94	□□□□□ -1.62
ROD1	YOR018W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
ROD1	YOR018W	SUI2	P20459	304 aa	Known RBP	4.93	□□□□□ -1.62
ROD1	YOR018W	PRD1	P25375	712 aa		4.93	□□□□□ -1.62
ROD1	YOR018W	TCB1	Q12466	1186 aa		4.93	□□□□□ -1.62
ROD1	YOR018W	PBS2	P08018	668 aa		4.93	□□□□□ -1.62
ROD1	YOR018W	HSP104	P31539	908 aa	Known RBP	4.93	□□□□□ -1.62
ROD1	YOR018W	GRX4	P32642	244 aa		4.93	□□□□□ -1.62
ROD1	YOR018W	AKL1	P38080	1108 aa	Known RBP	4.93	□□□□□ -1.62
ROD1	YOR018W	RTT109	Q07794	436 aa		4.93	□□□□□ -1.62
ROD1	YOR018W	TOM1	Q03280	3268 aa		4.92	□□□□□ -1.62
ROD1	YOR018W	NOP53	Q12080	455 aa	Known RBP	4.92	□□□□□ -1.62
ROD1	YOR018W	SIS1	P25294	352 aa	Known RBP	4.92	□□□□□ -1.62
ROD1	YOR018W	ADE16	P54113	591 aa	Known RBP	4.92	□□□□□ -1.62
ROD1	YOR018W	FRK1	Q03002	865 aa	Predicted RBP	4.92	□□□□□ -1.62
ROD1	YOR018W	YRF1-4	O13559	1382 aa		4.92	□□□□□ -1.62
ROD1	YOR018W	TPD3	P31383	635 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	YBR287W	P38355	427 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	IES2	P40154	320 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	DOT5	P40553	215 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	DSD1	P53095	428 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	RVB2	Q12464	471 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	URB1	P34241	1764 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	DBP1	P24784	617 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	SAP155	P43612	1002 aa		4.91	□□□□□ -1.62
ROD1	YOR018W	NUP42	P49686	430 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	IMH1	Q06704	911 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	RPO41	P13433	1351 aa	Known RBP	4.91	□□□□□ -1.62
ROD1	YOR018W	HEF3	P53978	1044 aa	Known RBP	4.9	□□□□□ -1.63
ROD1	YOR018W	IOC4	Q04213	475 aa		4.9	□□□□□ -1.63
ROD1	YOR018W	SCT1	P32784	759 aa		4.89	□□□□□ -1.63
ROD1	YOR018W	YKL133C	P36066	463 aa		4.89	□□□□□ -1.63
ROD1	YOR018W	RSF2	P46974	1380 aa		4.89	□□□□□ -1.63
ROD1	YOR018W	FOX2	Q02207	900 aa	Known RBP	4.89	□□□□□ -1.63
ROD1	YOR018W	NTH2	P35172	780 aa		4.89	□□□□□ -1.63
ROD1	YOR018W	INP54	Q08227	384 aa	Known RBP	4.89	□□□□□ -1.63
ROD1	YOR018W	SNF2	P22082	1703 aa		4.89	□□□□□ -1.63
ROD1	YOR018W	COB	P00163	385 aa		4.88	□□□□□ -1.63
ROD1	YOR018W	DIT2	P21595	489 aa		4.88	□□□□□ -1.63
ROD1	YOR018W	ZDS2	P54786	942 aa		4.88	□□□□□ -1.63
ROD1	YOR018W	TUM1	Q08686	304 aa	Known RBP	4.88	□□□□□ -1.63
ROD1	YOR018W	FKS3	Q04952	1785 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	PTC3	P34221	468 aa	Known RBP	4.87	□□□□□ -1.63
ROD1	YOR018W	UBP9	P39967	754 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	RRT14	P40470	206 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	YRF1-3	P0CX14	1859 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	YRF1-7	P0CX15	1859 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	YRF1-6	P53819	1859 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	RPN11	P43588	306 aa	Known RBP	4.87	□□□□□ -1.63
ROD1	YOR018W	YGR122W	P53272	402 aa		4.87	□□□□□ -1.63
ROD1	YOR018W	YNR021W	P53723	404 aa	Known RBP	4.87	□□□□□ -1.63
ROD1	YOR018W	VPS27	P40343	622 aa	Known RBP	4.86	□□□□□ -1.63
ROD1	YOR018W	ALE1	Q08548	619 aa		4.86	□□□□□ -1.63
ROD1	YOR018W	YOR238W	Q08634	303 aa		4.86	□□□□□ -1.63
ROD1	YOR018W	NUP145	P49687	1317 aa		4.86	□□□□□ -1.63
ROD1	YOR018W	DAL5	P15365	543 aa		4.86	□□□□□ -1.63
ROD1	YOR018W	OSM1	P21375	501 aa	Known RBP	4.86	□□□□□ -1.63
ROD1	YOR018W	GLN1	P32288	370 aa	Known RBP	4.86	□□□□□ -1.63
ROD1	YOR018W	REF2	P42073	533 aa	Predicted RBP	4.86	□□□□□ -1.63
ROD1	YOR018W	YDR090C	Q03193	310 aa		4.86	□□□□□ -1.63
ROD1	YOR018W	KIN1	P13185	1064 aa		4.85	□□□□□ -1.63
ROD1	YOR018W	YKR075C	P36155	307 aa		4.85	□□□□□ -1.63
ROD1	YOR018W	COQ4	O13525	335 aa		4.85	□□□□□ -1.63
ROD1	YOR018W	GLC3	P32775	704 aa		4.85	□□□□□ -1.63
ROD1	YOR018W	ILV3	P39522	585 aa	Known RBP	4.84	□□□□□ -1.63
ROD1	YOR018W	NPR2	P39923	615 aa		4.84	□□□□□ -1.63
ROD1	YOR018W	BMS1	Q08965	1183 aa	Known RBP	4.84	□□□□□ -1.63
ROD1	YOR018W	CDC45	Q08032	650 aa		4.84	□□□□□ -1.64
ROD1	YOR018W	MAM3	Q12296	706 aa		4.84	□□□□□ -1.64
ROD1	YOR018W	SIR4	P11978	1358 aa		4.84	□□□□□ -1.64
ROD1	YOR018W	COX6	P00427	148 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	UBP14	P38237	781 aa	Known RBP	4.83	□□□□□ -1.64
ROD1	YOR018W	TIF4632	P39936	914 aa	Known RBP	4.83	□□□□□ -1.64
ROD1	YOR018W	LYS4	P49367	693 aa	Predicted RBP	4.83	□□□□□ -1.64
ROD1	YOR018W	YNL050C	P53952	270 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	AOS1	Q06624	347 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	AIM7	Q12156	149 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	SWC3	P31376	625 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	ZDS1	P50111	915 aa	Known RBP	4.83	□□□□□ -1.64
ROD1	YOR018W	SRT1	Q03175	343 aa		4.83	□□□□□ -1.64
ROD1	YOR018W	VMA1	P17255	1071 aa	Known RBP	4.82	□□□□□ -1.64
ROD1	YOR018W	YIL092W	P40497	633 aa		4.82	□□□□□ -1.64
ROD1	YOR018W	ATG13	Q06628	738 aa		4.82	□□□□□ -1.64
ROD1	YOR018W	RPP0	P05317	312 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 62.7 ms