RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W HED1Q03937 162 aa6.8□□□□□ -1.32
VPS38YLR360W SPT5P27692 1063 aaKnown RBP6.78□□□□□ -1.32
VPS38YLR360W ATG32P40458 529 aa6.78□□□□□ -1.32
VPS38YLR360W RPL34BP40525 121 aaKnown RBP6.78□□□□□ -1.32
VPS38YLR360W NAF1P53919 492 aaKnown RBP6.78□□□□□ -1.32
VPS38YLR360W ITT1Q04638 464 aa6.76□□□□□ -1.33
VPS38YLR360W GUT2P32191 649 aa6.76□□□□□ -1.33
VPS38YLR360W BRE2P43132 505 aa6.76□□□□□ -1.33
VPS38YLR360W TIF1P10081 395 aaKnown RBP6.75□□□□□ -1.33
VPS38YLR360W ISF1P32488 338 aa6.75□□□□□ -1.33
VPS38YLR360W ENO2P00925 437 aaKnown RBP6.74□□□□□ -1.33
VPS38YLR360W CDC4P07834 779 aa6.74□□□□□ -1.33
VPS38YLR360W SUP45P12385 437 aaKnown RBP6.74□□□□□ -1.33
VPS38YLR360W STE20Q03497 939 aaKnown RBP6.74□□□□□ -1.33
VPS38YLR360W RTG2P32608 588 aaKnown RBP6.73□□□□□ -1.33
VPS38YLR360W EMP47P43555 445 aa6.73□□□□□ -1.33
VPS38YLR360W APP1P53933 587 aa6.73□□□□□ -1.33
VPS38YLR360W YPR084WQ06821 456 aa6.73□□□□□ -1.33
VPS38YLR360W MET32Q12041 191 aa6.73□□□□□ -1.33
VPS38YLR360W MCM16Q12262 181 aa6.73□□□□□ -1.33
VPS38YLR360W YPP1P46951 817 aa6.71□□□□□ -1.34
VPS38YLR360W HST3P53687 447 aa6.71□□□□□ -1.34
VPS38YLR360W ASH1P34233 588 aa6.7□□□□□ -1.34
VPS38YLR360W FRA1Q07825 749 aa6.7□□□□□ -1.34
VPS38YLR360W GCR2Q01722 534 aa6.69□□□□□ -1.34
VPS38YLR360W YPR204WQ08995 1032 aa6.69□□□□□ -1.34
VPS38YLR360W MRT4P33201 236 aaKnown RBP6.67□□□□□ -1.34
VPS38YLR360W EMW1P42842 904 aaKnown RBP6.67□□□□□ -1.34
VPS38YLR360W ENV9Q08651 330 aa6.67□□□□□ -1.34
VPS38YLR360W ENO1P00924 437 aaKnown RBP6.66□□□□□ -1.34
VPS38YLR360W AFT1P22149 690 aa6.66□□□□□ -1.34
VPS38YLR360W UGA3P26370 528 aa6.66□□□□□ -1.34
VPS38YLR360W GAR1P28007 205 aaKnown RBP6.66□□□□□ -1.34
VPS38YLR360W MRX12P47084 519 aa6.66□□□□□ -1.34
VPS38YLR360W RIM21P48565 533 aa6.66□□□□□ -1.34
VPS38YLR360W MKS1P34072 584 aa6.64□□□□□ -1.35
VPS38YLR360W ATG20Q07528 640 aa6.64□□□□□ -1.35
VPS38YLR360W RLF2Q12495 606 aa6.63□□□□□ -1.35
VPS38YLR360W SOH1P38633 127 aa6.62□□□□□ -1.35
VPS38YLR360W ATG3P40344 310 aa6.62□□□□□ -1.35
VPS38YLR360W YPL062WQ02781 134 aa6.62□□□□□ -1.35
VPS38YLR360W MRX10Q05648 414 aa6.62□□□□□ -1.35
VPS38YLR360W YBL086CP38177 466 aa6.61□□□□□ -1.35
VPS38YLR360W ISR1Q06098 443 aaKnown RBP6.61□□□□□ -1.35
VPS38YLR360W MET22P32179 357 aa6.6□□□□□ -1.35
VPS38YLR360W MSB3P48566 633 aaPredicted RBP6.6□□□□□ -1.35
VPS38YLR360W DFG5Q05031 458 aa6.6□□□□□ -1.35
VPS38YLR360W RDS2P19541 446 aaKnown RBP6.59□□□□□ -1.35
VPS38YLR360W FBP26P32604 452 aa6.59□□□□□ -1.35
VPS38YLR360W YJR115WP47152 169 aa6.59□□□□□ -1.35
VPS38YLR360W SRF1Q12516 437 aa6.59□□□□□ -1.35
VPS38YLR360W GBP2P25555 427 aaKnown RBP RIP-Chip data6.58□□□□□ -1.36not detected
VPS38YLR360W APL6P46682 809 aa6.58□□□□□ -1.36
VPS38YLR360W TAF7Q05021 590 aa6.58□□□□□ -1.36
VPS38YLR360W RTT106P40161 455 aa6.57□□□□□ -1.36
VPS38YLR360W KTR7P40504 517 aa6.57□□□□□ -1.36
VPS38YLR360W ISU1Q03020 165 aa6.57□□□□□ -1.36
VPS38YLR360W UTP13Q05946 817 aaKnown RBP6.57□□□□□ -1.36
VPS38YLR360W BDS1Q08347 646 aa6.57□□□□□ -1.36
VPS38YLR360W HAL5P38970 855 aaKnown RBP6.56□□□□□ -1.36
VPS38YLR360W PTK2P47116 818 aaKnown RBP6.56□□□□□ -1.36
VPS38YLR360W CPS1P27614 576 aa6.55□□□□□ -1.36
VPS38YLR360W ARG82P07250 355 aa6.54□□□□□ -1.36
VPS38YLR360W DAT1P13483 248 aaKnown RBP6.54□□□□□ -1.36
VPS38YLR360W TTI1P36097 1038 aa6.54□□□□□ -1.36
VPS38YLR360W STE6P12866 1290 aa6.53□□□□□ -1.36
VPS38YLR360W MIP1P15801 1254 aa6.53□□□□□ -1.36
VPS38YLR360W PEP12P32854 288 aa6.53□□□□□ -1.36
VPS38YLR360W SIS2P36024 562 aa6.53□□□□□ -1.36
VPS38YLR360W RPP2BP02400 110 aaKnown RBP6.52□□□□□ -1.37
VPS38YLR360W UTR2P32623 467 aa6.52□□□□□ -1.37
VPS38YLR360W YDR444WQ04093 687 aa6.52□□□□□ -1.37
VPS38YLR360W HDA3Q06623 655 aa6.52□□□□□ -1.37
VPS38YLR360W CBC2Q08920 208 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
VPS38YLR360W AAD14P42884 376 aa6.51□□□□□ -1.37
VPS38YLR360W TBS1P38114 1094 aa6.5□□□□□ -1.37
VPS38YLR360W DLD3P39976 496 aaKnown RBP6.5□□□□□ -1.37
VPS38YLR360W SSA4P22202 642 aaKnown RBP6.5□□□□□ -1.37
VPS38YLR360W TGL4P36165 910 aa6.5□□□□□ -1.37
VPS38YLR360W SPT2P06843 333 aaPredicted RBP6.49□□□□□ -1.37
VPS38YLR360W PDI1P17967 522 aaKnown RBP6.49□□□□□ -1.37
VPS38YLR360W DLD1P32891 587 aa6.49□□□□□ -1.37
VPS38YLR360W NUP85P46673 744 aa6.49□□□□□ -1.37
VPS38YLR360W LCB5Q06147 687 aaKnown RBP6.49□□□□□ -1.37
VPS38YLR360W WTM2Q12206 467 aa6.49□□□□□ -1.37
VPS38YLR360W AIM9P40053 627 aaKnown RBP6.48□□□□□ -1.37
VPS38YLR360W ECM23Q02710 187 aa6.48□□□□□ -1.37
VPS38YLR360W YFL034WP43564 1073 aa6.47□□□□□ -1.37
VPS38YLR360W TSC13Q99190 310 aa6.47□□□□□ -1.37
VPS38YLR360W GAL2P13181 574 aa6.46□□□□□ -1.38
VPS38YLR360W UTP7P40055 554 aaKnown RBP6.46□□□□□ -1.38
VPS38YLR360W LSC2P53312 427 aa6.46□□□□□ -1.38
VPS38YLR360W YLR346CQ06139 101 aa6.46□□□□□ -1.38
VPS38YLR360W PHO87P25360 923 aa6.45□□□□□ -1.38
VPS38YLR360W NTH2P35172 780 aa6.45□□□□□ -1.38
VPS38YLR360W SLX8P40072 274 aa6.45□□□□□ -1.38
VPS38YLR360W ACS2P52910 683 aaKnown RBP6.45□□□□□ -1.38
VPS38YLR360W HAP4P14064 554 aa6.44□□□□□ -1.38
VPS38YLR360W PUP1P25043 261 aa6.44□□□□□ -1.38
VPS38YLR360W YJR098CP47139 656 aa6.44□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 38.2 ms