RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W TAP42Q04372 366 aa5.94□□□□□ -1.46
SSH4YKL124W GRX4P32642 244 aa5.93□□□□□ -1.46
SSH4YKL124W YKR075CP36155 307 aa5.93□□□□□ -1.46
SSH4YKL124W UGA2P38067 497 aa5.93□□□□□ -1.46
SSH4YKL124W MEC3Q02574 474 aa5.93□□□□□ -1.46
SSH4YKL124W SEC3P33332 1336 aaKnown RBP5.92□□□□□ -1.46
SSH4YKL124W AUS1Q08409 1394 aa5.92□□□□□ -1.46
SSH4YKL124W DPS1P04802 557 aaKnown RBP5.92□□□□□ -1.46
SSH4YKL124W TGL3P40308 642 aa5.92□□□□□ -1.46
SSH4YKL124W ALD2P47771 506 aa5.92□□□□□ -1.46
SSH4YKL124W YRF1-4O13559 1382 aa5.91□□□□□ -1.46
SSH4YKL124W COBP00163 385 aa5.91□□□□□ -1.46
SSH4YKL124W SSA2P10592 639 aaKnown RBP5.91□□□□□ -1.46
SSH4YKL124W SPT7P35177 1332 aa5.9□□□□□ -1.46
SSH4YKL124W BDF1P35817 686 aa5.9□□□□□ -1.47
SSH4YKL124W LYS4P49367 693 aaPredicted RBP5.9□□□□□ -1.47
SSH4YKL124W RIM15P43565 1770 aa5.89□□□□□ -1.47
SSH4YKL124W RTG3P38165 486 aa5.89□□□□□ -1.47
SSH4YKL124W RCR1P38212 213 aa5.89□□□□□ -1.47
SSH4YKL124W RSM7P47150 247 aa5.89□□□□□ -1.47
SSH4YKL124W CTH1P47976 325 aa5.89□□□□□ -1.47
SSH4YKL124W GAS4Q08271 471 aa5.89□□□□□ -1.47
SSH4YKL124W FRK1Q03002 865 aaPredicted RBP5.88□□□□□ -1.47
SSH4YKL124W RPO41P13433 1351 aaKnown RBP5.87□□□□□ -1.47
SSH4YKL124W BBC1P47068 1157 aa5.87□□□□□ -1.47
SSH4YKL124W ADE16P54113 591 aaKnown RBP5.87□□□□□ -1.47
SSH4YKL124W POL5P39985 1022 aaKnown RBP5.86□□□□□ -1.47
SSH4YKL124W PDS5Q04264 1277 aa5.86□□□□□ -1.47
SSH4YKL124W MSB4Q12317 492 aa5.85□□□□□ -1.47
SSH4YKL124W AI2P03876 854 aa5.84□□□□□ -1.47
SSH4YKL124W ATG13Q06628 738 aa5.84□□□□□ -1.47
SSH4YKL124W AIM44Q99299 758 aa5.84□□□□□ -1.47
SSH4YKL124W SSA1P10591 642 aaKnown RBP5.83□□□□□ -1.48
SSH4YKL124W RAD4P14736 754 aa5.83□□□□□ -1.48
SSH4YKL124W KAR2P16474 682 aaKnown RBP5.83□□□□□ -1.48
SSH4YKL124W ALD3P54114 506 aa5.83□□□□□ -1.48
SSH4YKL124W CTF4Q01454 927 aa5.83□□□□□ -1.48
SSH4YKL124W HIM1Q06674 414 aa5.83□□□□□ -1.48
SSH4YKL124W INP54Q08227 384 aaKnown RBP5.83□□□□□ -1.48
SSH4YKL124W GRX1P25373 110 aaKnown RBP5.82□□□□□ -1.48
SSH4YKL124W OSM1P21375 501 aaKnown RBP5.81□□□□□ -1.48
SSH4YKL124W UTP22P53254 1237 aaPredicted RBP5.81□□□□□ -1.48
SSH4YKL124W BUG1Q12191 341 aa5.81□□□□□ -1.48
SSH4YKL124W NUP145P49687 1317 aa5.8□□□□□ -1.48
SSH4YKL124W DSD1P53095 428 aa5.79□□□□□ -1.48
SSH4YKL124W GRE2Q12068 342 aaKnown RBP5.79□□□□□ -1.48
SSH4YKL124W YLR271WQ06152 274 aa5.79□□□□□ -1.48
SSH4YKL124W TOS1P38288 455 aa5.78□□□□□ -1.48
SSH4YKL124W YBP2P53169 641 aa5.78□□□□□ -1.48
SSH4YKL124W AKL1P38080 1108 aaKnown RBP5.77□□□□□ -1.49
SSH4YKL124W BUB1P41695 1021 aaKnown RBP RIP-Chip data5.77□□□□□ -1.49not detected
SSH4YKL124W YRB30P53107 440 aaPredicted RBP5.77□□□□□ -1.49
SSH4YKL124W HSP104P31539 908 aaKnown RBP5.77□□□□□ -1.49
SSH4YKL124W SAP155P43612 1002 aa5.76□□□□□ -1.49
SSH4YKL124W AOS1Q06624 347 aa5.76□□□□□ -1.49
SSH4YKL124W UTP10P42945 1769 aaKnown RBP5.76□□□□□ -1.49
SSH4YKL124W TRK1P12685 1235 aa5.75□□□□□ -1.49
SSH4YKL124W PAP2P53632 584 aaKnown RBP5.75□□□□□ -1.49
SSH4YKL124W MDG1P53885 366 aa5.75□□□□□ -1.49
SSH4YKL124W DMA2P53924 522 aa5.74□□□□□ -1.49
SSH4YKL124W RMT2Q03305 412 aa5.74□□□□□ -1.49
SSH4YKL124W SSP1P38871 571 aa5.74□□□□□ -1.49
SSH4YKL124W KCC4P25389 1037 aa5.73□□□□□ -1.49
SSH4YKL124W NTH2P35172 780 aa5.73□□□□□ -1.49
SSH4YKL124W NST1P53935 1240 aa5.73□□□□□ -1.49
SSH4YKL124W HPC2Q01448 625 aa5.73□□□□□ -1.49
SSH4YKL124W TUM1Q08686 304 aaKnown RBP5.73□□□□□ -1.49
SSH4YKL124W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.73□□□□□ -1.49not detected
SSH4YKL124W LYS2P07702 1392 aa5.72□□□□□ -1.49
SSH4YKL124W CTT1P06115 562 aa5.72□□□□□ -1.49
SSH4YKL124W NYV1Q12255 253 aa5.72□□□□□ -1.49
SSH4YKL124W YKL222CP35995 705 aa5.71□□□□□ -1.49
SSH4YKL124W ERT1P38140 529 aa5.71□□□□□ -1.49
SSH4YKL124W RRT14P40470 206 aa5.71□□□□□ -1.49
SSH4YKL124W EAF6P47128 113 aa5.71□□□□□ -1.49
SSH4YKL124W MSN5P52918 1224 aa5.71□□□□□ -1.49
SSH4YKL124W NOP53Q12080 455 aaKnown RBP5.71□□□□□ -1.49
SSH4YKL124W PHM7Q12252 991 aa5.71□□□□□ -1.49
SSH4YKL124W UGA3P26370 528 aa5.71□□□□□ -1.5
SSH4YKL124W RRP46P53256 223 aaPredicted RBP5.71□□□□□ -1.5
SSH4YKL124W TEA1P47988 759 aa5.7□□□□□ -1.5
SSH4YKL124W RIX7Q07844 837 aaKnown RBP5.7□□□□□ -1.5
SSH4YKL124W YOR238WQ08634 303 aa5.7□□□□□ -1.5
SSH4YKL124W YER156CP40093 338 aaKnown RBP5.69□□□□□ -1.5
SSH4YKL124W YNL050CP53952 270 aa5.69□□□□□ -1.5
SSH4YKL124W ALE1Q08548 619 aa5.69□□□□□ -1.5
SSH4YKL124W SSP2Q08646 371 aa5.69□□□□□ -1.5
SSH4YKL124W NSE3Q05541 303 aa5.68□□□□□ -1.5
SSH4YKL124W PFF1P38244 976 aa5.68□□□□□ -1.5
SSH4YKL124W YFR016CP43597 1233 aaKnown RBP5.68□□□□□ -1.5
SSH4YKL124W PSD2P53037 1138 aaKnown RBP5.68□□□□□ -1.5
SSH4YKL124W RAT1Q02792 1006 aaKnown RBP5.68□□□□□ -1.5
SSH4YKL124W RPS9BP05755 195 aaKnown RBP5.67□□□□□ -1.5
SSH4YKL124W BUD27P43573 796 aaKnown RBP RIP-Chip data5.67□□□□□ -1.5not detected
SSH4YKL124W KIN4Q01919 800 aa5.67□□□□□ -1.5
SSH4YKL124W DIB1Q06819 143 aaPredicted RBP5.67□□□□□ -1.5
SSH4YKL124W LPD1P09624 499 aaKnown RBP5.66□□□□□ -1.5
SSH4YKL124W MAM1P40065 302 aa5.66□□□□□ -1.5
SSH4YKL124W RTR1P40084 226 aaPredicted RBP5.66□□□□□ -1.5
SSH4YKL124W YAP5P40574 245 aa5.66□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms