RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	SUB2	Q07478	446 aa	Known RBP	8.03	□□□□□ -1.12
NSE3	YDR288W	ENV9	Q08651	330 aa		8.03	□□□□□ -1.12
NSE3	YDR288W	RRD1	P40454	393 aa	Known RBP	8.02	□□□□□ -1.13
NSE3	YDR288W	FIG4	P42837	879 aa		8.02	□□□□□ -1.13
NSE3	YDR288W	TPD3	P31383	635 aa		8.01	□□□□□ -1.13
NSE3	YDR288W	MRX10	Q05648	414 aa		8.01	□□□□□ -1.13
NSE3	YDR288W	SSA1	P10591	642 aa	Known RBP	8	□□□□□ -1.13
NSE3	YDR288W	ATG3	P40344	310 aa		8	□□□□□ -1.13
NSE3	YDR288W	MOD5	P07884	428 aa		7.99	□□□□□ -1.13
NSE3	YDR288W	KIP2	P28743	706 aa		7.99	□□□□□ -1.13
NSE3	YDR288W	MRX12	P47084	519 aa		7.99	□□□□□ -1.13
NSE3	YDR288W	YEL077C	Q3E7X8	1277 aa		7.99	□□□□□ -1.13
NSE3	YDR288W	VAC17	P25591	423 aa		7.98	□□□□□ -1.13
NSE3	YDR288W	FRK1	Q03002	865 aa	Predicted RBP	7.98	□□□□□ -1.13
NSE3	YDR288W	FRA1	Q07825	749 aa		7.98	□□□□□ -1.13
NSE3	YDR288W	IXR1	P33417	597 aa		7.96	□□□□□ -1.14
NSE3	YDR288W	KTR7	P40504	517 aa		7.96	□□□□□ -1.14
NSE3	YDR288W	BDP1	P46678	594 aa		7.96	□□□□□ -1.14
NSE3	YDR288W	DPS1	P04802	557 aa	Known RBP	7.95	□□□□□ -1.14
NSE3	YDR288W	PUS5	Q06244	254 aa		7.95	□□□□□ -1.14
NSE3	YDR288W	RPL34A	P87262	121 aa	Predicted RBP	7.94	□□□□□ -1.14
NSE3	YDR288W	SYH1	Q02875	849 aa	Known RBP	7.94	□□□□□ -1.14
NSE3	YDR288W	YPR084W	Q06821	456 aa		7.94	□□□□□ -1.14
NSE3	YDR288W	RDS2	P19541	446 aa	Known RBP	7.92	□□□□□ -1.14
NSE3	YDR288W	SDH2	P21801	266 aa		7.92	□□□□□ -1.14
NSE3	YDR288W	TGL4	P36165	910 aa		7.92	□□□□□ -1.14
NSE3	YDR288W	GEF1	P37020	779 aa		7.92	□□□□□ -1.14
NSE3	YDR288W	SOH1	P38633	127 aa		7.91	□□□□□ -1.14
NSE3	YDR288W	CST6	P40535	587 aa		7.91	□□□□□ -1.14
NSE3	YDR288W	PEP12	P32854	288 aa		7.9	□□□□□ -1.14
NSE3	YDR288W	ITT1	Q04638	464 aa		7.9	□□□□□ -1.14
NSE3	YDR288W	PUP1	P25043	261 aa		7.89	□□□□□ -1.15
NSE3	YDR288W	NOB1	Q08444	459 aa	Known RBP	7.89	□□□□□ -1.15
NSE3	YDR288W	ECM23	Q02710	187 aa		7.88	□□□□□ -1.15
NSE3	YDR288W	UTP13	Q05946	817 aa	Known RBP	7.88	□□□□□ -1.15
NSE3	YDR288W	AMS1	P22855	1083 aa		7.87	□□□□□ -1.15
NSE3	YDR288W	APP1	P53933	587 aa		7.87	□□□□□ -1.15
NSE3	YDR288W	ATG20	Q07528	640 aa		7.87	□□□□□ -1.15
NSE3	YDR288W	YML083C	Q04526	418 aa		7.86	□□□□□ -1.15
NSE3	YDR288W	ISR1	Q06098	443 aa	Known RBP	7.85	□□□□□ -1.15
NSE3	YDR288W	GAL2	P13181	574 aa		7.84	□□□□□ -1.15
NSE3	YDR288W	APL6	P46682	809 aa		7.84	□□□□□ -1.15
NSE3	YDR288W	UBX7	P38349	436 aa		7.83	□□□□□ -1.16
NSE3	YDR288W	HED1	Q03937	162 aa		7.82	□□□□□ -1.16
NSE3	YDR288W	HAP4	P14064	554 aa		7.81	□□□□□ -1.16
NSE3	YDR288W	MIP1	P15801	1254 aa		7.81	□□□□□ -1.16
NSE3	YDR288W	PHO87	P25360	923 aa		7.81	□□□□□ -1.16
NSE3	YDR288W	EMW1	P42842	904 aa	Known RBP	7.81	□□□□□ -1.16
NSE3	YDR288W	MKS1	P34072	584 aa		7.8	□□□□□ -1.16
NSE3	YDR288W	YFL034W	P43564	1073 aa		7.8	□□□□□ -1.16
NSE3	YDR288W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	7.8	□□□□□ -1.16	not detected
NSE3	YDR288W	PDI1	P17967	522 aa	Known RBP	7.79	□□□□□ -1.16
NSE3	YDR288W	TSC13	Q99190	310 aa		7.79	□□□□□ -1.16
NSE3	YDR288W	SLX8	P40072	274 aa		7.78	□□□□□ -1.16
NSE3	YDR288W	RAS1	P01119	309 aa		7.77	□□□□□ -1.17
NSE3	YDR288W	CDC3	P32457	520 aa	Known RBP	7.77	□□□□□ -1.17
NSE3	YDR288W	HAL5	P38970	855 aa	Known RBP	7.77	□□□□□ -1.17
NSE3	YDR288W	AIM9	P40053	627 aa	Known RBP	7.77	□□□□□ -1.17
NSE3	YDR288W	ACS2	P52910	683 aa	Known RBP	7.77	□□□□□ -1.17
NSE3	YDR288W	SRC1	Q03707	834 aa		7.77	□□□□□ -1.17
NSE3	YDR288W	HDA3	Q06623	655 aa		7.77	□□□□□ -1.17
NSE3	YDR288W	RPP2B	P02400	110 aa	Known RBP	7.76	□□□□□ -1.17
NSE3	YDR288W	DAT1	P13483	248 aa	Known RBP	7.76	□□□□□ -1.17
NSE3	YDR288W	FBP26	P32604	452 aa		7.76	□□□□□ -1.17
NSE3	YDR288W	MRT4	P33201	236 aa	Known RBP	7.76	□□□□□ -1.17
NSE3	YDR288W	ISU1	Q03020	165 aa		7.76	□□□□□ -1.17
NSE3	YDR288W	UTR2	P32623	467 aa		7.75	□□□□□ -1.17
NSE3	YDR288W	TBS1	P38114	1094 aa		7.75	□□□□□ -1.17
NSE3	YDR288W	GAS4	Q08271	471 aa		7.74	□□□□□ -1.17
NSE3	YDR288W	CLA4	P48562	842 aa		7.73	□□□□□ -1.17
NSE3	YDR288W	DFG5	Q05031	458 aa		7.73	□□□□□ -1.17
NSE3	YDR288W	BDS1	Q08347	646 aa		7.73	□□□□□ -1.17
NSE3	YDR288W	NTH2	P35172	780 aa		7.72	□□□□□ -1.17
NSE3	YDR288W	YBL086C	P38177	466 aa		7.72	□□□□□ -1.17
NSE3	YDR288W	HST3	P53687	447 aa		7.72	□□□□□ -1.17
NSE3	YDR288W	PUF6	Q04373	656 aa	Known RBP	7.72	□□□□□ -1.17
NSE3	YDR288W	VAN1	P23642	535 aa		7.71	□□□□□ -1.18
NSE3	YDR288W	UGA3	P26370	528 aa		7.71	□□□□□ -1.18
NSE3	YDR288W	ROM1	P53046	1155 aa		7.71	□□□□□ -1.18
NSE3	YDR288W	CDC4	P07834	779 aa		7.7	□□□□□ -1.18
NSE3	YDR288W	MET32	Q12041	191 aa		7.7	□□□□□ -1.18
NSE3	YDR288W	SPT2	P06843	333 aa	Predicted RBP	7.69	□□□□□ -1.18
NSE3	YDR288W	DLD3	P39976	496 aa	Known RBP	7.69	□□□□□ -1.18
NSE3	YDR288W	RTT106	P40161	455 aa		7.69	□□□□□ -1.18
NSE3	YDR288W	YML020W	Q03722	664 aa		7.69	□□□□□ -1.18
NSE3	YDR288W	PUN1	Q06991	263 aa		7.69	□□□□□ -1.18
NSE3	YDR288W	RPS6A	P0CX37	236 aa	Known RBP	7.68	□□□□□ -1.18
NSE3	YDR288W	RPS6B	P0CX38	236 aa	Predicted RBP	7.68	□□□□□ -1.18
NSE3	YDR288W	STE6	P12866	1290 aa		7.68	□□□□□ -1.18
NSE3	YDR288W	AIR1	P40507	360 aa	Known RBP	7.68	□□□□□ -1.18
NSE3	YDR288W	TRS33	Q99394	268 aa		7.68	□□□□□ -1.18
NSE3	YDR288W	ASH1	P34233	588 aa		7.67	□□□□□ -1.18
NSE3	YDR288W	HAT1	Q12341	374 aa		7.67	□□□□□ -1.18
NSE3	YDR288W	CYT1	P07143	309 aa		7.66	□□□□□ -1.18
NSE3	YDR288W	SWI5	P08153	709 aa		7.66	□□□□□ -1.18
NSE3	YDR288W	CWH41	P53008	833 aa		7.66	□□□□□ -1.18
NSE3	YDR288W	WTM2	Q12206	467 aa		7.66	□□□□□ -1.18
NSE3	YDR288W	RGA2	Q06407	1009 aa		7.65	□□□□□ -1.18
NSE3	YDR288W	AFT1	P22149	690 aa		7.64	□□□□□ -1.19
NSE3	YDR288W	SLD2	P34252	453 aa		7.64	□□□□□ -1.19

Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms