RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C ARG8P18544 423 aa5.59□□□□□ -1.51
CDC9YDL164C SRP40P32583 406 aaPredicted RBP5.59□□□□□ -1.51
CDC9YDL164C RTF1P53064 558 aa5.59□□□□□ -1.51
CDC9YDL164C ATG1P53104 897 aa5.59□□□□□ -1.51
CDC9YDL164C PPM2Q08282 695 aa5.59□□□□□ -1.51
CDC9YDL164C PIN2Q12057 282 aa5.59□□□□□ -1.51
CDC9YDL164C MCM2P29469 868 aa5.58□□□□□ -1.52
CDC9YDL164C ISF1P32488 338 aa5.58□□□□□ -1.52
CDC9YDL164C YKL091CP33324 310 aaKnown RBP5.58□□□□□ -1.52
CDC9YDL164C RRP14P36080 434 aaKnown RBP5.58□□□□□ -1.52
CDC9YDL164C ROM1P53046 1155 aa5.58□□□□□ -1.52
CDC9YDL164C GUT1P32190 709 aa5.58□□□□□ -1.52
CDC9YDL164C KIC1P38692 1080 aa5.58□□□□□ -1.52
CDC9YDL164C FPR3P38911 411 aaKnown RBP5.58□□□□□ -1.52
CDC9YDL164C GTT3P39996 337 aa5.57□□□□□ -1.52
CDC9YDL164C TFG1P41895 735 aaPredicted RBP5.57□□□□□ -1.52
CDC9YDL164C BDF2Q07442 638 aa5.57□□□□□ -1.52
CDC9YDL164C SPT5P27692 1063 aaKnown RBP5.57□□□□□ -1.52
CDC9YDL164C BOI1P38041 980 aaKnown RBP5.57□□□□□ -1.52
CDC9YDL164C TOS4Q06266 489 aa5.57□□□□□ -1.52
CDC9YDL164C UBP12P39538 1254 aa5.56□□□□□ -1.52
CDC9YDL164C THI12P42883 340 aa5.56□□□□□ -1.52
CDC9YDL164C THI5P43534 340 aa5.56□□□□□ -1.52
CDC9YDL164C THI11P47183 340 aa5.56□□□□□ -1.52
CDC9YDL164C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
CDC9YDL164C PNP1Q05788 311 aa5.56□□□□□ -1.52
CDC9YDL164C THI13Q07748 340 aa5.56□□□□□ -1.52
CDC9YDL164C GRE2Q12068 342 aaKnown RBP5.56□□□□□ -1.52
CDC9YDL164C QDR1P40475 563 aa5.55□□□□□ -1.52
CDC9YDL164C BRE1Q07457 700 aaKnown RBP5.55□□□□□ -1.52
CDC9YDL164C MCM16Q12262 181 aa5.55□□□□□ -1.52
CDC9YDL164C ATH1P48016 1211 aa5.55□□□□□ -1.52
CDC9YDL164C GAL11P19659 1081 aa5.54□□□□□ -1.52
CDC9YDL164C ACS2P52910 683 aaKnown RBP5.54□□□□□ -1.52
CDC9YDL164C DNM1P54861 757 aa5.54□□□□□ -1.52
CDC9YDL164C YPR109WQ06104 294 aa5.54□□□□□ -1.52
CDC9YDL164C YDL121CQ07541 149 aa5.54□□□□□ -1.52
CDC9YDL164C GYP5Q12344 894 aa5.54□□□□□ -1.52
CDC9YDL164C PHO4P07270 312 aaKnown RBP5.53□□□□□ -1.52
CDC9YDL164C SUV3P32580 737 aa5.53□□□□□ -1.52
CDC9YDL164C KRI1P42846 591 aaKnown RBP5.53□□□□□ -1.52
CDC9YDL164C YOL036WQ08206 761 aa5.53□□□□□ -1.52
CDC9YDL164C MIP1P15801 1254 aa5.53□□□□□ -1.52
CDC9YDL164C MNN1P39106 762 aa5.53□□□□□ -1.52
CDC9YDL164C DAK2P43550 591 aa5.53□□□□□ -1.52
CDC9YDL164C MSB4Q12317 492 aa5.53□□□□□ -1.52
CDC9YDL164C CLB5P30283 435 aa5.52□□□□□ -1.53
CDC9YDL164C YMR196WQ04336 1088 aa5.52□□□□□ -1.53
CDC9YDL164C KTR2P33550 425 aa5.51□□□□□ -1.53
CDC9YDL164C AIM21P40563 679 aa5.51□□□□□ -1.53
CDC9YDL164C FUI1P38196 639 aa5.51□□□□□ -1.53
CDC9YDL164C SET4P42948 560 aa5.51□□□□□ -1.53
CDC9YDL164C ACF4P47129 309 aa5.51□□□□□ -1.53
CDC9YDL164C CDC11P32458 415 aa5.5□□□□□ -1.53
CDC9YDL164C GLO3P38682 493 aaKnown RBP5.5□□□□□ -1.53
CDC9YDL164C YHR020WP38708 688 aaKnown RBP5.5□□□□□ -1.53
CDC9YDL164C APL6P46682 809 aa5.5□□□□□ -1.53
CDC9YDL164C VMA4P22203 233 aaKnown RBP5.5□□□□□ -1.53
CDC9YDL164C MGE1P38523 228 aa5.5□□□□□ -1.53
CDC9YDL164C NAB3P38996 802 aaKnown RBP RIP-Chip data5.5□□□□□ -1.53not detected
CDC9YDL164C BOI2P39969 1040 aa5.5□□□□□ -1.53
CDC9YDL164C EMP47P43555 445 aa5.5□□□□□ -1.53
CDC9YDL164C POB3Q04636 552 aaKnown RBP5.5□□□□□ -1.53
CDC9YDL164C SEC6P32844 805 aa5.49□□□□□ -1.53
CDC9YDL164C RPT1P33299 467 aaKnown RBP5.49□□□□□ -1.53
CDC9YDL164C KIP3P53086 805 aaKnown RBP5.49□□□□□ -1.53
CDC9YDL164C HUL5P53119 910 aa5.49□□□□□ -1.53
CDC9YDL164C NAF1P53919 492 aaKnown RBP5.49□□□□□ -1.53
CDC9YDL164C YPR084WQ06821 456 aa5.49□□□□□ -1.53
CDC9YDL164C STI1P15705 589 aaKnown RBP RIP-Chip data5.49□□□□□ -1.53not detected
CDC9YDL164C MPE1P35728 441 aaKnown RBP5.49□□□□□ -1.53
CDC9YDL164C YEN1P40028 759 aa5.49□□□□□ -1.53
CDC9YDL164C CDC53Q12018 815 aaKnown RBP5.49□□□□□ -1.53
CDC9YDL164C YBL029C-AQ3E756 94 aa5.49□□□□□ -1.53
CDC9YDL164C TIM23P32897 222 aa5.48□□□□□ -1.53
CDC9YDL164C SLI15P38283 698 aa5.48□□□□□ -1.53
CDC9YDL164C FOL1P53848 824 aa5.48□□□□□ -1.53
CDC9YDL164C ECM16Q04217 1267 aaKnown RBP5.48□□□□□ -1.53
CDC9YDL164C TRM1P15565 570 aaKnown RBP5.48□□□□□ -1.53
CDC9YDL164C PHO87P25360 923 aa5.48□□□□□ -1.53
CDC9YDL164C VNX1P42839 908 aa5.48□□□□□ -1.53
CDC9YDL164C WSC3Q12215 556 aa5.48□□□□□ -1.53
CDC9YDL164C HTA1P04911 132 aaKnown RBP5.47□□□□□ -1.53
CDC9YDL164C HTA2P04912 132 aa5.47□□□□□ -1.53
CDC9YDL164C SLY41P22215 453 aa5.47□□□□□ -1.53
CDC9YDL164C GRX1P25373 110 aaKnown RBP5.47□□□□□ -1.53
CDC9YDL164C DCW1P36091 449 aa5.46□□□□□ -1.53
CDC9YDL164C RPS26AP39938 119 aaKnown RBP5.46□□□□□ -1.53
CDC9YDL164C RPS26BP39939 119 aaKnown RBP5.46□□□□□ -1.53
CDC9YDL164C SRS2P12954 1174 aa5.46□□□□□ -1.54
CDC9YDL164C UBP9P39967 754 aa5.46□□□□□ -1.54
CDC9YDL164C NUP82P40368 713 aa5.46□□□□□ -1.54
CDC9YDL164C LSO1Q3E827 93 aa5.46□□□□□ -1.54
CDC9YDL164C EAP1P36041 632 aaKnown RBP5.45□□□□□ -1.54
CDC9YDL164C ITC1P53125 1264 aa5.45□□□□□ -1.54
CDC9YDL164C PEX8P53248 589 aa5.45□□□□□ -1.54
CDC9YDL164C ERF2Q06551 359 aa5.45□□□□□ -1.54
CDC9YDL164C CDC73Q06697 393 aa5.45□□□□□ -1.54
CDC9YDL164C YKL069WP36088 180 aa5.45□□□□□ -1.54
CDC9YDL164C YPP1P46951 817 aa5.45□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 74 ms