RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	NEO1	Q92859	1461 aa		11.6	□□□□□ -0.55
PNKP-231	ENST00000640501	CCER2	I3L3R5	266 aa		11.6	□□□□□ -0.55
PNKP-231	ENST00000640501	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
PNKP-231	ENST00000640501	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.6	□□□□□ -0.55
PNKP-231	ENST00000640501	RALGAPB	Q86X10	1494 aa		11.59	□□□□□ -0.55
PNKP-231	ENST00000640501	STAC3	Q96MF2	364 aa		11.59	□□□□□ -0.55
PNKP-231	ENST00000640501	TET3	O43151	1660 aa		11.59	□□□□□ -0.55
PNKP-231	ENST00000640501	DHX29	Q7Z478	1369 aa	Known RBP	11.56	□□□□□ -0.56
PNKP-231	ENST00000640501	AFAP1	Q8N556	730 aa		11.56	□□□□□ -0.56
PNKP-231	ENST00000640501	HECW2	Q9P2P5	1572 aa		11.56	□□□□□ -0.56
PNKP-231	ENST00000640501	PRDM15	P57071	1507 aa	Predicted RBP	11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	SPHKAP	Q2M3C7	1700 aa		11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	KDM5C	P41229	1560 aa		11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	ZNF326	Q5BKZ1	582 aa	Known RBP	11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	MLH3	Q9UHC1	1453 aa		11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	TRPM2	O94759	1503 aa		11.55	□□□□□ -0.56
PNKP-231	ENST00000640501	ROCK2	O75116	1388 aa	Known RBP	11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	USP47	Q96K76	1375 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	GLI2	P10070	1586 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	POGZ	Q7Z3K3	1410 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	CNTLN	Q9NXG0	1405 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	LAMC1	P11047	1609 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	NBPF8	Q3BBV2	869 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	DCAF11	Q8TEB1	546 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	CEP152	O94986	1710 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	KIDINS220	Q9ULH0	1771 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	NEURL4	Q96JN8	1562 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	CCDC7	Q96M83	1385 aa		11.54	□□□□□ -0.56
PNKP-231	ENST00000640501	SPATA31E1	Q6ZUB1	1445 aa		11.53	□□□□□ -0.56
PNKP-231	ENST00000640501		E9PCH4	1651 aa		11.53	□□□□□ -0.56
PNKP-231	ENST00000640501	VWDE	Q8N2E2	1590 aa		11.53	□□□□□ -0.56
PNKP-231	ENST00000640501	MAP3K4	Q9Y6R4	1608 aa		11.53	□□□□□ -0.56
PNKP-231	ENST00000640501	BCORL1	Q5H9F3	1711 aa		11.52	□□□□□ -0.56
PNKP-231	ENST00000640501	A2M	P01023	1474 aa		11.52	□□□□□ -0.56
PNKP-231	ENST00000640501	CARD11	Q9BXL7	1154 aa		11.52	□□□□□ -0.57
PNKP-231	ENST00000640501	WASHC2A	Q641Q2	1341 aa		11.52	□□□□□ -0.57
PNKP-231	ENST00000640501	TRPM1	Q7Z4N2	1603 aa		11.52	□□□□□ -0.57
PNKP-231	ENST00000640501	RNF17	Q9BXT8	1623 aa	Known RBP	11.52	□□□□□ -0.57
PNKP-231	ENST00000640501	RIMBP3C	A6NJZ7	1639 aa		11.51	□□□□□ -0.57
PNKP-231	ENST00000640501	RIMBP3B	A6NNM3	1639 aa		11.51	□□□□□ -0.57
PNKP-231	ENST00000640501	RIMBP3	Q9UFD9	1639 aa		11.51	□□□□□ -0.57
PNKP-231	ENST00000640501	LMTK2	Q8IWU2	1503 aa		11.5	□□□□□ -0.57
PNKP-231	ENST00000640501	KIF3B	O15066	747 aa		11.5	□□□□□ -0.57
PNKP-231	ENST00000640501	PRAG1	Q86YV5	1406 aa		11.5	□□□□□ -0.57
PNKP-231	ENST00000640501	KDM2A	Q9Y2K7	1162 aa		11.49	□□□□□ -0.57
PNKP-231	ENST00000640501	PTPRT	O14522	1441 aa		11.49	□□□□□ -0.57
PNKP-231	ENST00000640501	PLA2R1	Q13018	1463 aa		11.49	□□□□□ -0.57
PNKP-231	ENST00000640501	EFCAB6	Q5THR3	1501 aa		11.49	□□□□□ -0.57
PNKP-231	ENST00000640501	KIF1B	O60333	1816 aa		11.48	□□□□□ -0.57
PNKP-231	ENST00000640501	ZC3H13	Q5T200	1668 aa	Known RBP	11.47	□□□□□ -0.57
PNKP-231	ENST00000640501	SLC24A1	O60721	1099 aa		11.47	□□□□□ -0.57
PNKP-231	ENST00000640501	GPRASP1	Q5JY77	1395 aa		11.46	□□□□□ -0.57
PNKP-231	ENST00000640501	KIF7	Q2M1P5	1343 aa		11.46	□□□□□ -0.57
PNKP-231	ENST00000640501	SCAF1	Q9H7N4	1312 aa	Known RBP	11.46	□□□□□ -0.57
PNKP-231	ENST00000640501	MROH1	Q8NDA8	1641 aa		11.46	□□□□□ -0.58
PNKP-231	ENST00000640501	RGL3	Q3MIN7	710 aa		11.45	□□□□□ -0.58
PNKP-231	ENST00000640501	CYB5RL	Q6IPT4	315 aa		11.45	□□□□□ -0.58
PNKP-231	ENST00000640501	GTF3C3	Q9Y5Q9	886 aa		11.45	□□□□□ -0.58
PNKP-231	ENST00000640501	RICTOR	Q6R327	1708 aa		11.45	□□□□□ -0.58
PNKP-231	ENST00000640501	KIAA1210	Q9ULL0	1709 aa		11.45	□□□□□ -0.58
PNKP-231	ENST00000640501	KTN1	Q86UP2	1357 aa	Known RBP	11.44	□□□□□ -0.58
PNKP-231	ENST00000640501	CLTCL1	P53675	1640 aa		11.44	□□□□□ -0.58
PNKP-231	ENST00000640501	ABCA6	Q8N139	1617 aa		11.44	□□□□□ -0.58
PNKP-231	ENST00000640501	DIP2B	Q9P265	1576 aa		11.43	□□□□□ -0.58
PNKP-231	ENST00000640501	EIF3A	Q14152	1382 aa	Known RBP	11.42	□□□□□ -0.58
PNKP-231	ENST00000640501	MADD	Q8WXG6	1647 aa		11.42	□□□□□ -0.58
PNKP-231	ENST00000640501	PPRC1	Q5VV67	1664 aa	Known RBP	11.42	□□□□□ -0.58
PNKP-231	ENST00000640501	DIP2C	Q9Y2E4	1556 aa		11.41	□□□□□ -0.58
PNKP-231	ENST00000640501	ZMYM4	Q5VZL5	1548 aa		11.41	□□□□□ -0.58
PNKP-231	ENST00000640501	MYOM2	P54296	1465 aa		11.41	□□□□□ -0.58
PNKP-231	ENST00000640501	CDCA8	Q53HL2	280 aa		11.41	□□□□□ -0.58
PNKP-231	ENST00000640501	CAMSAP1	Q5T5Y3	1602 aa		11.4	□□□□□ -0.58
PNKP-231	ENST00000640501	FRMPD1	Q5SYB0	1578 aa		11.4	□□□□□ -0.58
PNKP-231	ENST00000640501	WASHC2C	Q9Y4E1	1318 aa		11.39	□□□□□ -0.59
PNKP-231	ENST00000640501	ST20-MTHFS	A0A0A6YYL1	179 aa		11.39	□□□□□ -0.59
PNKP-231	ENST00000640501	TMF1	P82094	1093 aa		11.39	□□□□□ -0.59
PNKP-231	ENST00000640501	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.39	□□□□□ -0.59
PNKP-231	ENST00000640501	C11orf95	C9JLR9	678 aa	Predicted RBP	11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	FAM69C	Q0P6D2	419 aa		11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	PELP1	Q8IZL8	1130 aa	Known RBP	11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	POLR3GL	Q9BT43	218 aa		11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	ABCC3	O15438	1527 aa		11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	IFT172	Q9UG01	1749 aa		11.38	□□□□□ -0.59
PNKP-231	ENST00000640501	RPGRIP1L	Q68CZ1	1315 aa		11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	RERE	Q9P2R6	1566 aa		11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	IQGAP1	P46940	1657 aa		11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	ARHGAP31	Q2M1Z3	1444 aa		11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	GGT6	Q6P531	493 aa		11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	SCAF11	Q99590	1463 aa	Known RBP	11.37	□□□□□ -0.59
PNKP-231	ENST00000640501	PPP6R1	Q9UPN7	881 aa		11.36	□□□□□ -0.59
PNKP-231	ENST00000640501	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.36	□□□□□ -0.59
PNKP-231	ENST00000640501	ADGRB3	O60242	1522 aa		11.35	□□□□□ -0.59
PNKP-231	ENST00000640501	RAPGEF3	O95398	923 aa		11.35	□□□□□ -0.59
PNKP-231	ENST00000640501	RALBP1	Q15311	655 aa		11.35	□□□□□ -0.59
PNKP-231	ENST00000640501	MRS2	Q9HD23	443 aa		11.34	□□□□□ -0.59
PNKP-231	ENST00000640501	NPAT	Q14207	1427 aa		11.34	□□□□□ -0.59
PNKP-231	ENST00000640501	TSPOAP1	O95153	1857 aa		11.34	□□□□□ -0.59
PNKP-231	ENST00000640501	NEFL	P07196	543 aa		11.33	□□□□□ -0.6
PNKP-231	ENST00000640501	AGL	P35573	1532 aa		11.33	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms