RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CNTLNQ9NXG0 1405 aa8.97□□□□□ -0.97
SCN1A-213ENST00000636759 ABCC5O15440 1437 aa8.97□□□□□ -0.97
SCN1A-213ENST00000636759 JPH4Q96JJ6 628 aa8.97□□□□□ -0.97
SCN1A-213ENST00000636759 ADGRL2O95490 1459 aa8.96□□□□□ -0.97
SCN1A-213ENST00000636759 FAM9BQ8IZU0 186 aa8.96□□□□□ -0.97
SCN1A-213ENST00000636759 BBXQ8WY36 941 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-213ENST00000636759 NCLP19338 710 aaKnown RBP8.95□□□□□ -0.98
SCN1A-213ENST00000636759 CLCN1P35523 988 aa8.95□□□□□ -0.98
SCN1A-213ENST00000636759 ABCC10Q5T3U5 1492 aa8.95□□□□□ -0.98
SCN1A-213ENST00000636759 CLASP1Q7Z460 1538 aa8.95□□□□□ -0.98
SCN1A-213ENST00000636759 KDM5DQ9BY66 1539 aa8.95□□□□□ -0.98
SCN1A-213ENST00000636759 TONSLQ96HA7 1378 aa8.94□□□□□ -0.98
SCN1A-213ENST00000636759 GPATCH8Q9UKJ3 1502 aaKnown RBP8.94□□□□□ -0.98
SCN1A-213ENST00000636759 ZBED9Q6R2W3 1325 aa8.94□□□□□ -0.98
SCN1A-213ENST00000636759 ATP10BO94823 1461 aa8.94□□□□□ -0.98
SCN1A-213ENST00000636759 PRG4Q92954 1404 aaPredicted RBP8.94□□□□□ -0.98
SCN1A-213ENST00000636759 BACH2Q9BYV9 841 aa8.94□□□□□ -0.98
SCN1A-213ENST00000636759 FRAT2O75474 233 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-213ENST00000636759 CANXP27824 592 aaKnown RBP8.93□□□□□ -0.98
SCN1A-213ENST00000636759 ZNF326Q5BKZ1 582 aaKnown RBP8.93□□□□□ -0.98
SCN1A-213ENST00000636759 CENPJQ9HC77 1338 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-213ENST00000636759 TPM2P07951 284 aa8.93□□□□□ -0.98
SCN1A-213ENST00000636759 MS4A1P11836 297 aa8.93□□□□□ -0.98
SCN1A-213ENST00000636759 CCDC184Q52MB2 194 aa8.93□□□□□ -0.98
SCN1A-213ENST00000636759 NAP1L2Q9ULW6 460 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-213ENST00000636759 PRDM4Q9UKN5 801 aa8.93□□□□□ -0.98
SCN1A-213ENST00000636759 CAMSAP2Q08AD1 1489 aa8.92□□□□□ -0.98
SCN1A-213ENST00000636759 DHX29Q7Z478 1369 aaKnown RBP8.92□□□□□ -0.98
SCN1A-213ENST00000636759 CNGB1Q14028 1251 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-213ENST00000636759 ARXQ96QS3 562 aa8.92□□□□□ -0.98
SCN1A-213ENST00000636759 SLC4A3P48751 1232 aa8.92□□□□□ -0.98
SCN1A-213ENST00000636759 CCDC7Q96M83 1385 aa8.91□□□□□ -0.98
SCN1A-213ENST00000636759 MRS2Q9HD23 443 aa8.91□□□□□ -0.98
SCN1A-213ENST00000636759 CDC42BPBQ9Y5S2 1711 aa8.91□□□□□ -0.98
SCN1A-213ENST00000636759 HSPA5P11021 654 aaKnown RBP8.91□□□□□ -0.98
SCN1A-213ENST00000636759 PREX2Q70Z35 1606 aa8.9□□□□□ -0.98
SCN1A-213ENST00000636759 NBPF8Q3BBV2 869 aa8.9□□□□□ -0.98
SCN1A-213ENST00000636759 ERCC6L2Q5T890 1561 aa8.9□□□□□ -0.99
SCN1A-213ENST00000636759 ARHGEF5Q12774 1597 aa8.89□□□□□ -0.99
SCN1A-213ENST00000636759 FBLN2P98095 1184 aa8.89□□□□□ -0.99
SCN1A-213ENST00000636759 UHRF1BP1Q6BDS2 1440 aa8.89□□□□□ -0.99
SCN1A-213ENST00000636759 SHANK2Q9UPX8 1470 aa8.89□□□□□ -0.99
SCN1A-213ENST00000636759 CHMP4BQ9H444 224 aaKnown RBP8.88□□□□□ -0.99
SCN1A-213ENST00000636759 MYO5CQ9NQX4 1742 aa8.88□□□□□ -0.99
SCN1A-213ENST00000636759 TRPM1Q7Z4N2 1603 aa8.88□□□□□ -0.99
SCN1A-213ENST00000636759 ABCC2Q92887 1545 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 TNNT2P45379 298 aaPredicted RBP8.87□□□□□ -0.99
SCN1A-213ENST00000636759 MPHOSPH9Q99550 1183 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 NUDCQ9Y266 331 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 PAXIP1Q6ZW49 1069 aaPredicted RBP8.87□□□□□ -0.99
SCN1A-213ENST00000636759 MAP7D2Q96T17 732 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 GOLGA6L3A6NEY3 463 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 LAMC1P11047 1609 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 PTPRGP23470 1445 aa8.87□□□□□ -0.99
SCN1A-213ENST00000636759 RNF123Q5XPI4 1314 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 ZNF644Q9H582 1327 aaPredicted RBP8.86□□□□□ -0.99
SCN1A-213ENST00000636759 ARHGEF12Q9NZN5 1544 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 KLHL34Q8N239 644 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 L3MBTL2Q969R5 705 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 TRIM44Q96DX7 344 aaPredicted RBP8.86□□□□□ -0.99
SCN1A-213ENST00000636759 POGKQ9P215 609 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 UHRF1BP1LA0JNW5 1464 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 SAMD9LQ8IVG5 1584 aa8.86□□□□□ -0.99
SCN1A-213ENST00000636759 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
SCN1A-213ENST00000636759 RALGAPBQ86X10 1494 aa8.85□□□□□ -0.99
SCN1A-213ENST00000636759 ZCCHC11Q5TAX3 1644 aaKnown RBP8.84□□□□□ -0.99
SCN1A-213ENST00000636759 TTC37Q6PGP7 1564 aa8.84□□□□□ -0.99
SCN1A-213ENST00000636759 MAST1Q9Y2H9 1570 aa8.84□□□□□ -0.99
SCN1A-213ENST00000636759 PRKRIP1Q9H875 184 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-213ENST00000636759 RRP7BPQ9NSQ0 103 aa8.84□□□□□ -0.99
SCN1A-213ENST00000636759 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.84□□□□□ -0.99
SCN1A-213ENST00000636759 ZHX1Q9UKY1 873 aaPredicted RBP8.84□□□□□ -0.99
SCN1A-213ENST00000636759 UNC13BO14795 1591 aa8.84□□□□□ -0.99
SCN1A-213ENST00000636759 KIF7Q2M1P5 1343 aa8.84□□□□□ -0.99
SCN1A-213ENST00000636759 ESPNB1AK53 854 aa8.84□□□□□ -1
SCN1A-213ENST00000636759 IPO4Q8TEX9 1081 aaKnown RBP8.84□□□□□ -1
SCN1A-213ENST00000636759 GTF2E1P29083 439 aaPredicted RBP8.83□□□□□ -1
SCN1A-213ENST00000636759 SMAP1Q8IYB5 467 aaPredicted RBP8.83□□□□□ -1
SCN1A-213ENST00000636759 SMG6Q86US8 1419 aaKnown RBP8.83□□□□□ -1
SCN1A-213ENST00000636759 RNF17Q9BXT8 1623 aaKnown RBP8.83□□□□□ -1
SCN1A-213ENST00000636759 MYH16Q9H6N6 1097 aa8.82□□□□□ -1
SCN1A-213ENST00000636759 CHIC2Q9UKJ5 165 aa8.82□□□□□ -1
SCN1A-213ENST00000636759 KIAA1107Q9UPP5 1409 aa8.82□□□□□ -1
SCN1A-213ENST00000636759 PLEKHD1A6NEE1 506 aa8.81□□□□□ -1
SCN1A-213ENST00000636759 FOXD1Q16676 465 aa8.81□□□□□ -1
SCN1A-213ENST00000636759 STAC3Q96MF2 364 aa8.81□□□□□ -1
SCN1A-213ENST00000636759 CFDP1Q9UEE9 299 aaPredicted RBP8.81□□□□□ -1
SCN1A-213ENST00000636759 KIAA1211Q6ZU35 1233 aa8.81□□□□□ -1
SCN1A-213ENST00000636759 FAM13BQ9NYF5 915 aa8.81□□□□□ -1
SCN1A-213ENST00000636759 XRCC6P12956 609 aaKnown RBP eCLIP8.8□□□□□ -1
SCN1A-213ENST00000636759 LRPPRCP42704 1394 aaKnown RBP8.8□□□□□ -1
SCN1A-213ENST00000636759 PLXNC1O60486 1568 aa8.8□□□□□ -1
SCN1A-213ENST00000636759 EXOC6Q8TAG9 804 aa8.79□□□□□ -1
SCN1A-213ENST00000636759 ANP32BQ92688 251 aaKnown RBP8.79□□□□□ -1
SCN1A-213ENST00000636759 CDK11BP21127 795 aaKnown RBP8.79□□□□□ -1
SCN1A-213ENST00000636759 EIF4G2P78344 907 aaKnown RBP eCLIP8.79□□□□□ -1
SCN1A-213ENST00000636759 C9orf84Q5VXU9 1444 aa8.79□□□□□ -1
SCN1A-213ENST00000636759 MTERF4Q7Z6M4 381 aaKnown RBP8.78□□□□□ -1
SCN1A-213ENST00000636759 IQGAP3Q86VI3 1631 aa8.78□□□□□ -1
SCN1A-213ENST00000636759 ARID3AQ99856 593 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms