RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ATP10AO60312 1499 aa20.77■□□□□ 0.92
CLN3-242ENST00000635958 NUP155O75694 1391 aa20.77■□□□□ 0.92
CLN3-242ENST00000635958 PZPP20742 1482 aa20.76■□□□□ 0.91
CLN3-242ENST00000635958 REREQ9P2R6 1566 aa20.75■□□□□ 0.91
CLN3-242ENST00000635958 BCORL1Q5H9F3 1711 aa20.75■□□□□ 0.91
CLN3-242ENST00000635958 KIF3BO15066 747 aa20.74■□□□□ 0.91
CLN3-242ENST00000635958 DEPDC5O75140 1603 aa20.74■□□□□ 0.91
CLN3-242ENST00000635958 SLC4A1APQ9BWU0 796 aaKnown RBP20.73■□□□□ 0.91
CLN3-242ENST00000635958 ARHGEF40Q8TER5 1519 aa20.72■□□□□ 0.91
CLN3-242ENST00000635958 RNF17Q9BXT8 1623 aaKnown RBP20.7■□□□□ 0.9
CLN3-242ENST00000635958 IQGAP3Q86VI3 1631 aa20.69■□□□□ 0.9
CLN3-242ENST00000635958 AGLP35573 1532 aa20.69■□□□□ 0.9
CLN3-242ENST00000635958 FAM135AQ9P2D6 1515 aa20.69■□□□□ 0.9
CLN3-242ENST00000635958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.69■□□□□ 0.9
CLN3-242ENST00000635958 VWDEQ8N2E2 1590 aa20.68■□□□□ 0.9
CLN3-242ENST00000635958 MROH1Q8NDA8 1641 aa20.68■□□□□ 0.9
CLN3-242ENST00000635958 PRDM15P57071 1507 aaPredicted RBP20.68■□□□□ 0.9
CLN3-242ENST00000635958 AEBP2Q6ZN18 517 aaPredicted RBP20.67■□□□□ 0.9
CLN3-242ENST00000635958 KANK1Q14678 1352 aa20.66■□□□□ 0.9
CLN3-242ENST00000635958 PKD2Q13563 968 aa20.65■□□□□ 0.9
CLN3-242ENST00000635958 ANKRD30BQ9BXX2 1392 aa20.62■□□□□ 0.89
CLN3-242ENST00000635958 GGT6Q6P531 493 aa20.62■□□□□ 0.89
CLN3-242ENST00000635958 LMTK2Q8IWU2 1503 aa20.61■□□□□ 0.89
CLN3-242ENST00000635958 PPP6R1Q9UPN7 881 aa20.61■□□□□ 0.89
CLN3-242ENST00000635958 FOXD1Q16676 465 aa20.6■□□□□ 0.89
CLN3-242ENST00000635958 SIGLEC1Q9BZZ2 1709 aa20.59■□□□□ 0.89
CLN3-242ENST00000635958 TET3O43151 1660 aa20.58■□□□□ 0.88
CLN3-242ENST00000635958 SIN3AQ96ST3 1273 aa20.57■□□□□ 0.88
CLN3-242ENST00000635958 WASHC2CQ9Y4E1 1318 aa20.55■□□□□ 0.88
CLN3-242ENST00000635958 ABCC3O15438 1527 aa20.55■□□□□ 0.88
CLN3-242ENST00000635958 TIMELESSQ9UNS1 1208 aa20.53■□□□□ 0.88
CLN3-242ENST00000635958 KDM4FA0A1W2PPD8 638 aa20.53■□□□□ 0.88
CLN3-242ENST00000635958 E9PCH4 1651 aa20.52■□□□□ 0.88
CLN3-242ENST00000635958 EFCAB6Q5THR3 1501 aa20.52■□□□□ 0.88
CLN3-242ENST00000635958 ZC3H13Q5T200 1668 aaKnown RBP20.52■□□□□ 0.87
CLN3-242ENST00000635958 PLA2R1Q13018 1463 aa20.51■□□□□ 0.87
CLN3-242ENST00000635958 CEP152O94986 1710 aa20.51■□□□□ 0.87
CLN3-242ENST00000635958 PTPRTO14522 1441 aa20.5■□□□□ 0.87
CLN3-242ENST00000635958 RPRD2Q5VT52 1461 aaKnown RBP20.5■□□□□ 0.87
CLN3-242ENST00000635958 NEUROD1Q13562 356 aa20.5■□□□□ 0.87
CLN3-242ENST00000635958 ARHGAP31Q2M1Z3 1444 aa20.5■□□□□ 0.87
CLN3-242ENST00000635958 ARID4BQ4LE39 1312 aaPredicted RBP20.48■□□□□ 0.87
CLN3-242ENST00000635958 NPATQ14207 1427 aa20.47■□□□□ 0.87
CLN3-242ENST00000635958 CAMSAP1Q5T5Y3 1602 aa20.46■□□□□ 0.87
CLN3-242ENST00000635958 MLECQ14165 292 aa20.45■□□□□ 0.86
CLN3-242ENST00000635958 TRPM2O94759 1503 aa20.43■□□□□ 0.86
CLN3-242ENST00000635958 CCDC144AA2RUR9 1427 aa20.42■□□□□ 0.86
CLN3-242ENST00000635958 SPHKAPQ2M3C7 1700 aa20.42■□□□□ 0.86
CLN3-242ENST00000635958 NOS1P29475 1434 aa20.4■□□□□ 0.86
CLN3-242ENST00000635958 CNTLNQ9NXG0 1405 aa20.4■□□□□ 0.86
CLN3-242ENST00000635958 TONSLQ96HA7 1378 aa20.4■□□□□ 0.86
CLN3-242ENST00000635958 CLTCQ00610 1675 aaKnown RBP20.39■□□□□ 0.86
CLN3-242ENST00000635958 ESF1Q9H501 851 aaKnown RBP20.39■□□□□ 0.85
CLN3-242ENST00000635958 PELP1Q8IZL8 1130 aaKnown RBP20.38■□□□□ 0.85
CLN3-242ENST00000635958 ZMYM3Q14202 1370 aa20.37■□□□□ 0.85
CLN3-242ENST00000635958 PPP1R15AO75807 674 aaPredicted RBP20.36■□□□□ 0.85
CLN3-242ENST00000635958 L3MBTL2Q969R5 705 aa20.35■□□□□ 0.85
CLN3-242ENST00000635958 CFAP65Q6ZU64 1925 aaKnown RBP20.35■□□□□ 0.85
CLN3-242ENST00000635958 MROH2AA6NES4 1674 aa20.34■□□□□ 0.85
CLN3-242ENST00000635958 CLTCL1P53675 1640 aa20.33■□□□□ 0.85
CLN3-242ENST00000635958 ERVK-7P63135 1459 aa20.32■□□□□ 0.84
CLN3-242ENST00000635958 PREX1Q8TCU6 1659 aa20.32■□□□□ 0.84
CLN3-242ENST00000635958 SPATA31E1Q6ZUB1 1445 aa20.32■□□□□ 0.84
CLN3-242ENST00000635958 NEURL4Q96JN8 1562 aa20.31■□□□□ 0.84
CLN3-242ENST00000635958 SYNMO15061 1565 aa20.31■□□□□ 0.84
CLN3-242ENST00000635958 FBXO31Q5XUX0 539 aaPredicted RBP20.31■□□□□ 0.84
CLN3-242ENST00000635958 SLC52A1Q9NWF4 448 aa20.31■□□□□ 0.84
CLN3-242ENST00000635958 SPATA31D1Q6ZQQ2 1576 aa20.3■□□□□ 0.84
CLN3-242ENST00000635958 PIK3C2BO00750 1634 aa20.29■□□□□ 0.84
CLN3-242ENST00000635958 FER1L4A9Z1Z3 1794 aa20.28■□□□□ 0.84
CLN3-242ENST00000635958 UGGT1Q9NYU2 1555 aa20.28■□□□□ 0.84
CLN3-242ENST00000635958 ADAMTSL3P82987 1691 aa20.28■□□□□ 0.84
CLN3-242ENST00000635958 IDI1Q13907 227 aa20.26■□□□□ 0.83
CLN3-242ENST00000635958 KIF1BO60333 1816 aa20.25■□□□□ 0.83
CLN3-242ENST00000635958 RGL3Q3MIN7 710 aa20.24■□□□□ 0.83
CLN3-242ENST00000635958 STAC3Q96MF2 364 aa20.24■□□□□ 0.83
CLN3-242ENST00000635958 MADDQ8WXG6 1647 aa20.23■□□□□ 0.83
CLN3-242ENST00000635958 C3P01024 1663 aa20.22■□□□□ 0.83
CLN3-242ENST00000635958 ADGRB3O60242 1522 aa20.22■□□□□ 0.83
CLN3-242ENST00000635958 DCAF11Q8TEB1 546 aa20.21■□□□□ 0.83
CLN3-242ENST00000635958 UHRF1BP1Q6BDS2 1440 aa20.21■□□□□ 0.83
CLN3-242ENST00000635958 TNRQ92752 1358 aa20.2■□□□□ 0.82
CLN3-242ENST00000635958 CEBPAP49715 358 aaPredicted RBP20.2■□□□□ 0.82
CLN3-242ENST00000635958 NBPF8Q3BBV2 869 aa20.18■□□□□ 0.82
CLN3-242ENST00000635958 RPGRIP1LQ68CZ1 1315 aa20.17■□□□□ 0.82
CLN3-242ENST00000635958 RIMS1Q86UR5 1692 aaKnown RBP20.17■□□□□ 0.82
CLN3-242ENST00000635958 TMEM131LA2VDJ0 1609 aa20.16■□□□□ 0.82
CLN3-242ENST00000635958 CHGAP10645 457 aaKnown RBP20.16■□□□□ 0.82
CLN3-242ENST00000635958 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
CLN3-242ENST00000635958 NLRP1Q9C000 1473 aa20.14■□□□□ 0.81
CLN3-242ENST00000635958 PRAG1Q86YV5 1406 aa20.13■□□□□ 0.81
CLN3-242ENST00000635958 PTPRMP28827 1452 aa20.13■□□□□ 0.81
CLN3-242ENST00000635958 ZNF326Q5BKZ1 582 aaKnown RBP20.12■□□□□ 0.81
CLN3-242ENST00000635958 IFT172Q9UG01 1749 aa20.12■□□□□ 0.81
CLN3-242ENST00000635958 A2ML1A8K2U0 1454 aa20.12■□□□□ 0.81
CLN3-242ENST00000635958 MYOM2P54296 1465 aa20.12■□□□□ 0.81
CLN3-242ENST00000635958 KDM5AP29375 1690 aaKnown RBP20.11■□□□□ 0.81
CLN3-242ENST00000635958 STAG3Q9UJ98 1225 aa20.09■□□□□ 0.81
CLN3-242ENST00000635958 SETD1BQ9UPS6 1966 aaKnown RBP20.09■□□□□ 0.81
CLN3-242ENST00000635958 NRXN1Q9ULB1 1477 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms