RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 CLIP1P30622 1438 aa7.68□□□□□ -1.18
LINC00550-201ENST00000629293 ARHGAP35Q9NRY4 1499 aa7.68□□□□□ -1.18
LINC00550-201ENST00000629293 C9orf84Q5VXU9 1444 aa7.68□□□□□ -1.18
LINC00550-201ENST00000629293 CFAP74Q9C0B2 1584 aa7.67□□□□□ -1.18
LINC00550-201ENST00000629293 MAGI2Q86UL8 1455 aa7.67□□□□□ -1.18
LINC00550-201ENST00000629293 UHRF1BP1Q6BDS2 1440 aa7.67□□□□□ -1.18
LINC00550-201ENST00000629293 SIGLEC1Q9BZZ2 1709 aa7.67□□□□□ -1.18
LINC00550-201ENST00000629293 MNX1P50219 401 aaPredicted RBP7.66□□□□□ -1.18
LINC00550-201ENST00000629293 HNRNPMP52272 730 aaKnown RBP eCLIP7.66□□□□□ -1.18
LINC00550-201ENST00000629293 GGT6Q6P531 493 aa7.66□□□□□ -1.18
LINC00550-201ENST00000629293 TROQ12816 1431 aaPredicted RBP7.66□□□□□ -1.18
LINC00550-201ENST00000629293 KIF14Q15058 1648 aa7.66□□□□□ -1.18
LINC00550-201ENST00000629293 ZNF518AQ6AHZ1 1483 aa7.66□□□□□ -1.18
LINC00550-201ENST00000629293 FER1L4A9Z1Z3 1794 aa7.66□□□□□ -1.18
LINC00550-201ENST00000629293 ZMYM4Q5VZL5 1548 aa7.65□□□□□ -1.18
LINC00550-201ENST00000629293 TRAPPC8Q9Y2L5 1435 aa7.65□□□□□ -1.18
LINC00550-201ENST00000629293 ILDR2Q71H61 639 aa7.65□□□□□ -1.18
LINC00550-201ENST00000629293 SPAG9O60271 1321 aaKnown RBP7.64□□□□□ -1.19
LINC00550-201ENST00000629293 RIOK3O14730 519 aaKnown RBP7.64□□□□□ -1.19
LINC00550-201ENST00000629293 CFDP1Q9UEE9 299 aaPredicted RBP7.64□□□□□ -1.19
LINC00550-201ENST00000629293 ZBTB47Q9UFB7 747 aaPredicted RBP7.64□□□□□ -1.19
LINC00550-201ENST00000629293 NCKAP5LQ9HCH0 1330 aa7.63□□□□□ -1.19
LINC00550-201ENST00000629293 MYO5CQ9NQX4 1742 aa7.62□□□□□ -1.19
LINC00550-201ENST00000629293 TMEM132AQ24JP5 1023 aa7.62□□□□□ -1.19
LINC00550-201ENST00000629293 ARHGEF12Q9NZN5 1544 aa7.62□□□□□ -1.19
LINC00550-201ENST00000629293 UBAP1LF5GYI3 381 aa7.62□□□□□ -1.19
LINC00550-201ENST00000629293 SGIP1Q9BQI5 828 aa7.62□□□□□ -1.19
LINC00550-201ENST00000629293 SETD1BQ9UPS6 1966 aaKnown RBP7.62□□□□□ -1.19
LINC00550-201ENST00000629293 ZNF335Q9H4Z2 1342 aaPredicted RBP7.61□□□□□ -1.19
LINC00550-201ENST00000629293 PIP4K2BP78356 416 aa7.6□□□□□ -1.19
LINC00550-201ENST00000629293 ZNF644Q9H582 1327 aaPredicted RBP7.6□□□□□ -1.19
LINC00550-201ENST00000629293 MTUS2Q5JR59 1369 aa7.6□□□□□ -1.19
LINC00550-201ENST00000629293 GSE1Q14687 1217 aa7.59□□□□□ -1.19
LINC00550-201ENST00000629293 DIP2CQ9Y2E4 1556 aa7.59□□□□□ -1.19
LINC00550-201ENST00000629293 ZMYM3Q14202 1370 aa7.59□□□□□ -1.19
LINC00550-201ENST00000629293 CCNB3Q8WWL7 1395 aa7.59□□□□□ -1.19
LINC00550-201ENST00000629293 CHRM1P11229 460 aaPredicted RBP7.59□□□□□ -1.19
LINC00550-201ENST00000629293 ARXQ96QS3 562 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 PREX1Q8TCU6 1659 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 CASKIN1Q8WXD9 1431 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 MLH3Q9UHC1 1453 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 SOCS7O14512 581 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 CADPS2Q86UW7 1296 aa7.58□□□□□ -1.2
LINC00550-201ENST00000629293 CCDC18Q5T9S5 1454 aa7.57□□□□□ -1.2
LINC00550-201ENST00000629293 ABCA6Q8N139 1617 aa7.57□□□□□ -1.2
LINC00550-201ENST00000629293 KDM5CP41229 1560 aa7.57□□□□□ -1.2
LINC00550-201ENST00000629293 KIF3BO15066 747 aa7.57□□□□□ -1.2
LINC00550-201ENST00000629293 SYCP2Q9BX26 1530 aa7.57□□□□□ -1.2
LINC00550-201ENST00000629293 FBXO31Q5XUX0 539 aaPredicted RBP7.56□□□□□ -1.2
LINC00550-201ENST00000629293 CREBZFQ9NS37 354 aa7.56□□□□□ -1.2
LINC00550-201ENST00000629293 CDC42BPBQ9Y5S2 1711 aa7.56□□□□□ -1.2
LINC00550-201ENST00000629293 ABCC1P33527 1531 aa7.56□□□□□ -1.2
LINC00550-201ENST00000629293 CNTLNQ9NXG0 1405 aa7.55□□□□□ -1.2
LINC00550-201ENST00000629293 STRCQ7RTU9 1775 aa7.55□□□□□ -1.2
LINC00550-201ENST00000629293 NCOA1Q15788 1441 aa7.55□□□□□ -1.2
LINC00550-201ENST00000629293 GPATCH8Q9UKJ3 1502 aaKnown RBP7.55□□□□□ -1.2
LINC00550-201ENST00000629293 C3P01024 1663 aa7.55□□□□□ -1.2
LINC00550-201ENST00000629293 LRRIQ1Q96JM4 1722 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 PTPRTO14522 1441 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 VGFO15240 615 aaPredicted RBP7.54□□□□□ -1.2
LINC00550-201ENST00000629293 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.54□□□□□ -1.2
LINC00550-201ENST00000629293 CAMSAP1Q5T5Y3 1602 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 PREX2Q70Z35 1606 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 KCNV2Q8TDN2 545 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 WASHC2CQ9Y4E1 1318 aa7.54□□□□□ -1.2
LINC00550-201ENST00000629293 SUPT6HQ7KZ85 1726 aaKnown RBP7.54□□□□□ -1.2
LINC00550-201ENST00000629293 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.53□□□□□ -1.2
LINC00550-201ENST00000629293 STK25O00506 426 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 ZFP91Q96JP5 570 aaPredicted RBP7.53□□□□□ -1.2
LINC00550-201ENST00000629293 SAMD9LQ8IVG5 1584 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 RASEFQ8IZ41 740 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 KIDINS220Q9ULH0 1771 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 A2MP01023 1474 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 FYCO1Q9BQS8 1478 aa7.53□□□□□ -1.2
LINC00550-201ENST00000629293 AGLP35573 1532 aa7.52□□□□□ -1.21
LINC00550-201ENST00000629293 ATP7AQ04656 1500 aa7.52□□□□□ -1.21
LINC00550-201ENST00000629293 HSPA1LP34931 641 aa7.52□□□□□ -1.21
LINC00550-201ENST00000629293 ITSN2Q9NZM3 1697 aa7.51□□□□□ -1.21
LINC00550-201ENST00000629293 CDC42BPAQ5VT25 1732 aa7.51□□□□□ -1.21
LINC00550-201ENST00000629293 TSPY4P0CV99 314 aa7.51□□□□□ -1.21
LINC00550-201ENST00000629293 TSPY10P0CW01 314 aa7.51□□□□□ -1.21
LINC00550-201ENST00000629293 BCL11BQ9C0K0 894 aaPredicted RBP7.51□□□□□ -1.21
LINC00550-201ENST00000629293 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.51□□□□□ -1.21
LINC00550-201ENST00000629293 SPATA31D1Q6ZQQ2 1576 aa7.51□□□□□ -1.21
LINC00550-201ENST00000629293 BRPF1P55201 1214 aaPredicted RBP7.5□□□□□ -1.21
LINC00550-201ENST00000629293 DAXXQ9UER7 740 aaPredicted RBP7.5□□□□□ -1.21
LINC00550-201ENST00000629293 TOM1O60784 492 aa7.5□□□□□ -1.21
LINC00550-201ENST00000629293 PLEKHG5O94827 1062 aa7.5□□□□□ -1.21
LINC00550-201ENST00000629293 NPATQ14207 1427 aa7.5□□□□□ -1.21
LINC00550-201ENST00000629293 LTBP4Q8N2S1 1624 aa7.5□□□□□ -1.21
LINC00550-201ENST00000629293 ANKLE2Q86XL3 938 aa7.5□□□□□ -1.21
LINC00550-201ENST00000629293 PLEKHH2Q8IVE3 1493 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 PTPRKQ15262 1439 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 LOC105371045A0A1W2PR82 267 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 CLTCQ00610 1675 aaKnown RBP7.49□□□□□ -1.21
LINC00550-201ENST00000629293 REREQ9P2R6 1566 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 TNRQ92752 1358 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 KIAA1107Q9UPP5 1409 aa7.49□□□□□ -1.21
LINC00550-201ENST00000629293 THEMISQ8N1K5 641 aaPredicted RBP7.48□□□□□ -1.21
LINC00550-201ENST00000629293 DHX29Q7Z478 1369 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms