RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 CHIC1Q5VXU3 224 aa13.52□□□□□ -0.25
LINC00550-201ENST00000629293 AEBP2Q6ZN18 517 aaPredicted RBP13.39□□□□□ -0.27
LINC00550-201ENST00000629293 PHF23Q9BUL5 403 aaPredicted RBP12.11□□□□□ -0.47
LINC00550-201ENST00000629293 NISCHQ9Y2I1 1504 aa11.64□□□□□ -0.55
LINC00550-201ENST00000629293 PLPPR3Q6T4P5 718 aa11.13□□□□□ -0.63
LINC00550-201ENST00000629293 SENP3Q9H4L4 574 aaPredicted RBP10.99□□□□□ -0.65
LINC00550-201ENST00000629293 ABCC9O60706 1549 aa10.72□□□□□ -0.69
LINC00550-201ENST00000629293 ADRA2BP18089 450 aa10.6□□□□□ -0.71
LINC00550-201ENST00000629293 KCNA4P22459 653 aa10.49□□□□□ -0.73
LINC00550-201ENST00000629293 PPP6R1Q9UPN7 881 aa10.46□□□□□ -0.74
LINC00550-201ENST00000629293 EHMT2Q96KQ7 1210 aa10.37□□□□□ -0.75
LINC00550-201ENST00000629293 CCDC180Q9P1Z9 1646 aa10.36□□□□□ -0.75
LINC00550-201ENST00000629293 FOXD1Q16676 465 aa10.28□□□□□ -0.76
LINC00550-201ENST00000629293 DCAF8L2P0C7V8 631 aa10.23□□□□□ -0.77
LINC00550-201ENST00000629293 DNAJC5BQ9UF47 199 aa10.16□□□□□ -0.78
LINC00550-201ENST00000629293 CSRNP3Q8WYN3 585 aa10.15□□□□□ -0.78
LINC00550-201ENST00000629293 PABPN1Q86U42 306 aaKnown RBP eCLIP10.06□□□□□ -0.8
LINC00550-201ENST00000629293 RB1CC1Q8TDY2 1594 aa10.01□□□□□ -0.81
LINC00550-201ENST00000629293 SLC4A1APQ9BWU0 796 aaKnown RBP9.95□□□□□ -0.82
LINC00550-201ENST00000629293 PPP4R3CPQ6ZMV5 832 aa9.93□□□□□ -0.82
LINC00550-201ENST00000629293 NACADO15069 1562 aa9.88□□□□□ -0.83
LINC00550-201ENST00000629293 ZBTB22O15209 634 aa9.81□□□□□ -0.84
LINC00550-201ENST00000629293 NPM3O75607 178 aaKnown RBP9.78□□□□□ -0.84
LINC00550-201ENST00000629293 UNC13AQ9UPW8 1703 aa9.71□□□□□ -0.85
LINC00550-201ENST00000629293 BICRAQ9NZM4 1560 aa9.7□□□□□ -0.86
LINC00550-201ENST00000629293 PIAS4Q8N2W9 510 aaPredicted RBP9.69□□□□□ -0.86
LINC00550-201ENST00000629293 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
LINC00550-201ENST00000629293 SCRIBQ14160 1630 aa9.63□□□□□ -0.87
LINC00550-201ENST00000629293 MYO15BQ96JP2 1530 aa9.63□□□□□ -0.87
LINC00550-201ENST00000629293 CECR2Q9BXF3 1484 aa9.62□□□□□ -0.87
LINC00550-201ENST00000629293 ZCCHC6Q5VYS8 1495 aaKnown RBP9.6□□□□□ -0.87
LINC00550-201ENST00000629293 CC2D2AQ9P2K1 1620 aa9.57□□□□□ -0.88
LINC00550-201ENST00000629293 EIF4G1Q04637 1599 aaKnown RBP9.51□□□□□ -0.89
LINC00550-201ENST00000629293 DCAF1Q9Y4B6 1507 aa9.49□□□□□ -0.89
LINC00550-201ENST00000629293 CNKSR2Q8WXI2 1034 aa9.49□□□□□ -0.89
LINC00550-201ENST00000629293 SHROOM4Q9ULL8 1493 aa9.46□□□□□ -0.89
LINC00550-201ENST00000629293 RTN4Q9NQC3 1192 aaKnown RBP9.37□□□□□ -0.91
LINC00550-201ENST00000629293 FOXD4L1Q9NU39 408 aa9.36□□□□□ -0.91
LINC00550-201ENST00000629293 DNAJC5Q9H3Z4 198 aa9.35□□□□□ -0.91
LINC00550-201ENST00000629293 SLC24A1O60721 1099 aa9.33□□□□□ -0.92
LINC00550-201ENST00000629293 POTEDQ86YR6 584 aa9.31□□□□□ -0.92
LINC00550-201ENST00000629293 MAPK8IP2Q13387 824 aaPredicted RBP9.28□□□□□ -0.92
LINC00550-201ENST00000629293 ERCC6Q03468 1493 aa9.27□□□□□ -0.92
LINC00550-201ENST00000629293 SCAF1Q9H7N4 1312 aaKnown RBP9.22□□□□□ -0.93
LINC00550-201ENST00000629293 AMER1Q5JTC6 1135 aaPredicted RBP9.21□□□□□ -0.94
LINC00550-201ENST00000629293 RNF216Q9NWF9 866 aaPredicted RBP9.19□□□□□ -0.94
LINC00550-201ENST00000629293 SLC4A2P04920 1241 aa9.17□□□□□ -0.94
LINC00550-201ENST00000629293 NCAPD3P42695 1498 aa9.16□□□□□ -0.94
LINC00550-201ENST00000629293 NESP48681 1621 aa9.16□□□□□ -0.94
LINC00550-201ENST00000629293 ATAD2BQ9ULI0 1458 aa9.16□□□□□ -0.94
LINC00550-201ENST00000629293 CUX2O14529 1486 aa9.13□□□□□ -0.95
LINC00550-201ENST00000629293 BAZ1BQ9UIG0 1483 aaKnown RBP9.1□□□□□ -0.95
LINC00550-201ENST00000629293 SMARCA2P51531 1590 aa9.09□□□□□ -0.95
LINC00550-201ENST00000629293 SMARCA4P51532 1647 aa9.08□□□□□ -0.96
LINC00550-201ENST00000629293 TRIM41Q8WV44 630 aa9.08□□□□□ -0.96
LINC00550-201ENST00000629293 HOXD11P31277 338 aaPredicted RBP9.06□□□□□ -0.96
LINC00550-201ENST00000629293 MSH5O43196 834 aa9.05□□□□□ -0.96
LINC00550-201ENST00000629293 HMGXB3Q12766 1538 aa9.04□□□□□ -0.96
LINC00550-201ENST00000629293 BAZ1AQ9NRL2 1556 aaPredicted RBP9.04□□□□□ -0.96
LINC00550-201ENST00000629293 MROH2BQ7Z745 1585 aa9.02□□□□□ -0.97
LINC00550-201ENST00000629293 PDS5BQ9NTI5 1447 aa8.99□□□□□ -0.97
LINC00550-201ENST00000629293 ATXN8OSP0DMR3 200 aa8.99□□□□□ -0.97
LINC00550-201ENST00000629293 DMRT2Q9Y5R5 561 aa8.97□□□□□ -0.97
LINC00550-201ENST00000629293 FKBP8Q14318 412 aa8.96□□□□□ -0.97
LINC00550-201ENST00000629293 CADPSQ9ULU8 1353 aa8.95□□□□□ -0.98
LINC00550-201ENST00000629293 LAMC3Q9Y6N6 1575 aa8.94□□□□□ -0.98
LINC00550-201ENST00000629293 THOC2Q8NI27 1593 aaKnown RBP8.94□□□□□ -0.98
LINC00550-201ENST00000629293 KIF21AQ7Z4S6 1674 aa8.93□□□□□ -0.98
LINC00550-201ENST00000629293 PEG3Q9GZU2 1588 aa8.91□□□□□ -0.98
LINC00550-201ENST00000629293 MYCNP04198 464 aaPredicted RBP8.9□□□□□ -0.99
LINC00550-201ENST00000629293 WIZO95785 1651 aa8.89□□□□□ -0.99
LINC00550-201ENST00000629293 MRC2Q9UBG0 1479 aa8.89□□□□□ -0.99
LINC00550-201ENST00000629293 CEP164Q9UPV0 1460 aa8.86□□□□□ -0.99
LINC00550-201ENST00000629293 OSCARQ8IYS5 282 aa8.86□□□□□ -0.99
LINC00550-201ENST00000629293 FANCD2Q9BXW9 1451 aa8.85□□□□□ -0.99
LINC00550-201ENST00000629293 ATF5Q9Y2D1 282 aaPredicted RBP8.85□□□□□ -0.99
LINC00550-201ENST00000629293 WDR62O43379 1518 aa8.8□□□□□ -1
LINC00550-201ENST00000629293 RSF1Q96T23 1441 aaPredicted RBP8.8□□□□□ -1
LINC00550-201ENST00000629293 FBLN2P98095 1184 aa8.78□□□□□ -1
LINC00550-201ENST00000629293 CFTRP13569 1480 aa8.78□□□□□ -1
LINC00550-201ENST00000629293 URB2Q14146 1524 aaKnown RBP8.76□□□□□ -1.01
LINC00550-201ENST00000629293 CYB5RLQ6IPT4 315 aa8.74□□□□□ -1.01
LINC00550-201ENST00000629293 TOP2AP11388 1531 aaKnown RBP8.73□□□□□ -1.01
LINC00550-201ENST00000629293 TRHP20396 242 aaPredicted RBP8.72□□□□□ -1.01
LINC00550-201ENST00000629293 ZNF608Q9ULD9 1512 aaPredicted RBP8.71□□□□□ -1.01
LINC00550-201ENST00000629293 CCDC88BA6NC98 1476 aa8.69□□□□□ -1.02
LINC00550-201ENST00000629293 AQRO60306 1485 aaKnown RBP eCLIP8.66□□□□□ -1.02
LINC00550-201ENST00000629293 IFT140Q96RY7 1462 aa8.66□□□□□ -1.02
LINC00550-201ENST00000629293 TOPBP1Q92547 1522 aa8.65□□□□□ -1.03
LINC00550-201ENST00000629293 RIMBP3CA6NJZ7 1639 aa8.63□□□□□ -1.03
LINC00550-201ENST00000629293 RIMBP3BA6NNM3 1639 aa8.63□□□□□ -1.03
LINC00550-201ENST00000629293 RIMBP3Q9UFD9 1639 aa8.63□□□□□ -1.03
LINC00550-201ENST00000629293 ARHGEF11O15085 1522 aa8.63□□□□□ -1.03
LINC00550-201ENST00000629293 TDRD9Q8NDG6 1382 aaKnown RBP8.63□□□□□ -1.03
LINC00550-201ENST00000629293 CHMP7Q8WUX9 453 aaPredicted RBP8.61□□□□□ -1.03
LINC00550-201ENST00000629293 SUPT5HO00267 1087 aaKnown RBP8.6□□□□□ -1.03
LINC00550-201ENST00000629293 RAD54L2Q9Y4B4 1467 aa8.59□□□□□ -1.03
LINC00550-201ENST00000629293 EIF4G3O43432 1585 aaKnown RBP8.59□□□□□ -1.04
LINC00550-201ENST00000629293 SOGA1O94964 1423 aa8.57□□□□□ -1.04
LINC00550-201ENST00000629293 POLA1P09884 1462 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms