RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 UHRF1BP1Q6BDS2 1440 aa17.42■□□□□ 0.38
CCDC88A-214ENST00000621814 ARHGAP5Q13017 1502 aa17.42■□□□□ 0.38
CCDC88A-214ENST00000621814 RSPH4AQ5TD94 716 aa17.41■□□□□ 0.38
CCDC88A-214ENST00000621814 MYT1LQ9UL68 1186 aa17.41■□□□□ 0.38
CCDC88A-214ENST00000621814 FAM135AQ9P2D6 1515 aa17.4■□□□□ 0.38
CCDC88A-214ENST00000621814 MYBBP1AQ9BQG0 1328 aaKnown RBP17.4■□□□□ 0.38
CCDC88A-214ENST00000621814 SYCP2Q9BX26 1530 aa17.39■□□□□ 0.37
CCDC88A-214ENST00000621814 SAMD9LQ8IVG5 1584 aa17.39■□□□□ 0.37
CCDC88A-214ENST00000621814 SMG6Q86US8 1419 aaKnown RBP17.38■□□□□ 0.37
CCDC88A-214ENST00000621814 RALBP1Q15311 655 aa17.38■□□□□ 0.37
CCDC88A-214ENST00000621814 PLEKHH2Q8IVE3 1493 aa17.37■□□□□ 0.37
CCDC88A-214ENST00000621814 POLR1AO95602 1720 aaPredicted RBP17.36■□□□□ 0.37
CCDC88A-214ENST00000621814 PANK3Q9H999 370 aa17.35■□□□□ 0.37
CCDC88A-214ENST00000621814 ARHGEF12Q9NZN5 1544 aa17.34■□□□□ 0.37
CCDC88A-214ENST00000621814 KTN1Q86UP2 1357 aaKnown RBP17.34■□□□□ 0.37
CCDC88A-214ENST00000621814 PRAG1Q86YV5 1406 aa17.33■□□□□ 0.36
CCDC88A-214ENST00000621814 CDC42BPBQ9Y5S2 1711 aa17.33■□□□□ 0.36
CCDC88A-214ENST00000621814 AFAP1Q8N556 730 aa17.33■□□□□ 0.36
CCDC88A-214ENST00000621814 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
CCDC88A-214ENST00000621814 NLRP13Q86W25 1043 aa17.32■□□□□ 0.36
CCDC88A-214ENST00000621814 ERCC6L2Q5T890 1561 aa17.32■□□□□ 0.36
CCDC88A-214ENST00000621814 ARHGEF5Q12774 1597 aa17.32■□□□□ 0.36
CCDC88A-214ENST00000621814 TTC37Q6PGP7 1564 aa17.32■□□□□ 0.36
CCDC88A-214ENST00000621814 PLA2R1Q13018 1463 aa17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 EFCAB2Q5VUJ9 269 aa17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 DISP3Q9P2K9 1392 aa17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 KDM5DQ9BY66 1539 aa17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 CDCA7LQ96GN5 454 aa17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 BRD4O60885 1362 aaPredicted RBP17.31■□□□□ 0.36
CCDC88A-214ENST00000621814 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.3■□□□□ 0.36
CCDC88A-214ENST00000621814 PER1O15534 1290 aaPredicted RBP17.29■□□□□ 0.36
CCDC88A-214ENST00000621814 TMF1P82094 1093 aa17.29■□□□□ 0.36
CCDC88A-214ENST00000621814 A2MP01023 1474 aa17.28■□□□□ 0.36
CCDC88A-214ENST00000621814 TESK2Q96S53 571 aa17.28■□□□□ 0.36
CCDC88A-214ENST00000621814 PREX2Q70Z35 1606 aa17.28■□□□□ 0.36
CCDC88A-214ENST00000621814 EXOC6Q8TAG9 804 aa17.27■□□□□ 0.36
CCDC88A-214ENST00000621814 RCAN3Q9UKA8 241 aa17.27■□□□□ 0.36
CCDC88A-214ENST00000621814 CHD1O14646 1710 aa17.26■□□□□ 0.35
CCDC88A-214ENST00000621814 PLIN1O60240 522 aa17.25■□□□□ 0.35
CCDC88A-214ENST00000621814 LRPPRCP42704 1394 aaKnown RBP17.25■□□□□ 0.35
CCDC88A-214ENST00000621814 SPAG9O60271 1321 aaKnown RBP17.25■□□□□ 0.35
CCDC88A-214ENST00000621814 RRP1P56182 461 aaKnown RBP17.24■□□□□ 0.35
CCDC88A-214ENST00000621814 TRAPPC8Q9Y2L5 1435 aa17.23■□□□□ 0.35
CCDC88A-214ENST00000621814 RNF123Q5XPI4 1314 aa17.23■□□□□ 0.35
CCDC88A-214ENST00000621814 ERBINQ96RT1 1412 aa17.22■□□□□ 0.35
CCDC88A-214ENST00000621814 PARD3Q8TEW0 1356 aa17.22■□□□□ 0.35
CCDC88A-214ENST00000621814 KNSTRNQ9Y448 316 aa17.21■□□□□ 0.35
CCDC88A-214ENST00000621814 KIF3BO15066 747 aa17.19■□□□□ 0.34
CCDC88A-214ENST00000621814 ABCC2Q92887 1545 aa17.19■□□□□ 0.34
CCDC88A-214ENST00000621814 NPM2Q86SE8 214 aaKnown RBP17.19■□□□□ 0.34
CCDC88A-214ENST00000621814 TRPM1Q7Z4N2 1603 aa17.19■□□□□ 0.34
CCDC88A-214ENST00000621814 PLCH2O75038 1416 aa17.19■□□□□ 0.34
CCDC88A-214ENST00000621814 ADAMTS8Q9UP79 889 aa17.18■□□□□ 0.34
CCDC88A-214ENST00000621814 NBR1Q14596 966 aa17.17■□□□□ 0.34
CCDC88A-214ENST00000621814 GPRASP1Q5JY77 1395 aa17.17■□□□□ 0.34
CCDC88A-214ENST00000621814 DUOX2Q9NRD8 1548 aa17.16■□□□□ 0.34
CCDC88A-214ENST00000621814 COL17A1Q9UMD9 1497 aaPredicted RBP17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 PAK3O75914 559 aaPredicted RBP17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 CHGAP10645 457 aaKnown RBP17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 WDR43Q15061 677 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 MYO5CQ9NQX4 1742 aa17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 SKAP1Q86WV1 359 aa17.15■□□□□ 0.34
CCDC88A-214ENST00000621814 UNC13BO14795 1591 aa17.14■□□□□ 0.33
CCDC88A-214ENST00000621814 ANP32AP39687 249 aaKnown RBP17.14■□□□□ 0.33
CCDC88A-214ENST00000621814 NOP58Q9Y2X3 529 aaKnown RBP17.13■□□□□ 0.33
CCDC88A-214ENST00000621814 PDE3BQ13370 1112 aa17.12■□□□□ 0.33
CCDC88A-214ENST00000621814 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
CCDC88A-214ENST00000621814 CCDC146Q8IYE0 955 aa17.12■□□□□ 0.33
CCDC88A-214ENST00000621814 CFAP70Q5T0N1 1121 aa17.11■□□□□ 0.33
CCDC88A-214ENST00000621814 MAST1Q9Y2H9 1570 aa17.11■□□□□ 0.33
CCDC88A-214ENST00000621814 PPP2R1AP30153 589 aa17.11■□□□□ 0.33
CCDC88A-214ENST00000621814 IQGAP3Q86VI3 1631 aa17.11■□□□□ 0.33
CCDC88A-214ENST00000621814 PRDM15P57071 1507 aaPredicted RBP17.1■□□□□ 0.33
CCDC88A-214ENST00000621814 WASHC2CQ9Y4E1 1318 aa17.1■□□□□ 0.33
CCDC88A-214ENST00000621814 E9PCH4 1651 aa17.1■□□□□ 0.33
CCDC88A-214ENST00000621814 CRBNQ96SW2 442 aa17.1■□□□□ 0.33
CCDC88A-214ENST00000621814 SCAPERQ9BY12 1400 aa17.09■□□□□ 0.33
CCDC88A-214ENST00000621814 PLXNC1O60486 1568 aa17.08■□□□□ 0.33
CCDC88A-214ENST00000621814 C20orf194Q5TEA3 1177 aa17.08■□□□□ 0.33
CCDC88A-214ENST00000621814 SHROOM2Q13796 1616 aa17.08■□□□□ 0.32
CCDC88A-214ENST00000621814 ZCCHC11Q5TAX3 1644 aaKnown RBP17.08■□□□□ 0.32
CCDC88A-214ENST00000621814 MAGI2Q86UL8 1455 aa17.07■□□□□ 0.32
CCDC88A-214ENST00000621814 CDCA8Q53HL2 280 aa17.06■□□□□ 0.32
CCDC88A-214ENST00000621814 KANK1Q14678 1352 aa17.06■□□□□ 0.32
CCDC88A-214ENST00000621814 AMER1Q5JTC6 1135 aaPredicted RBP17.06■□□□□ 0.32
CCDC88A-214ENST00000621814 ZBTB47Q9UFB7 747 aaPredicted RBP17.06■□□□□ 0.32
CCDC88A-214ENST00000621814 TNNT2P45379 298 aaPredicted RBP17.05■□□□□ 0.32
CCDC88A-214ENST00000621814 ABCC1P33527 1531 aa17.05■□□□□ 0.32
CCDC88A-214ENST00000621814 IPO9Q96P70 1041 aaKnown RBP17.05■□□□□ 0.32
CCDC88A-214ENST00000621814 ADGRF5Q8IZF2 1346 aa17.04■□□□□ 0.32
CCDC88A-214ENST00000621814 ATP10AO60312 1499 aa17.04■□□□□ 0.32
CCDC88A-214ENST00000621814 EIF2AK4Q9P2K8 1649 aaKnown RBP17.03■□□□□ 0.32
CCDC88A-214ENST00000621814 GGT6Q6P531 493 aa17.03■□□□□ 0.32
CCDC88A-214ENST00000621814 NUTM2DQ5VT03 806 aaPredicted RBP17.02■□□□□ 0.32
CCDC88A-214ENST00000621814 WDR7Q9Y4E6 1490 aa17.02■□□□□ 0.31
CCDC88A-214ENST00000621814 PDE4AP27815 886 aa17.02■□□□□ 0.31
CCDC88A-214ENST00000621814 FANCAO15360 1455 aa17.01■□□□□ 0.31
CCDC88A-214ENST00000621814 PLEKHH1Q9ULM0 1364 aa17.01■□□□□ 0.31
CCDC88A-214ENST00000621814 APAF1O14727 1248 aa17■□□□□ 0.31
CCDC88A-214ENST00000621814 TRAK1Q9UPV9 953 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms