RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 MROH2AA6NES4 1674 aa7.99□□□□□ -1.13
SHMT1-211ENST00000618902 FER1L4A9Z1Z3 1794 aa7.99□□□□□ -1.13
SHMT1-211ENST00000618902 KIF3BO15066 747 aa7.97□□□□□ -1.13
SHMT1-211ENST00000618902 ACIN1Q9UKV3 1341 aaKnown RBP7.97□□□□□ -1.13
SHMT1-211ENST00000618902 ROCK1Q13464 1354 aa7.97□□□□□ -1.13
SHMT1-211ENST00000618902 ZMYM3Q14202 1370 aa7.97□□□□□ -1.13
SHMT1-211ENST00000618902 ANKRD30AQ9BXX3 1397 aa7.97□□□□□ -1.13
SHMT1-211ENST00000618902 UHRF1BP1Q6BDS2 1440 aa7.96□□□□□ -1.13
SHMT1-211ENST00000618902 ERBINQ96RT1 1412 aa7.96□□□□□ -1.13
SHMT1-211ENST00000618902 DUOX2Q9NRD8 1548 aa7.96□□□□□ -1.14
SHMT1-211ENST00000618902 MROH1Q8NDA8 1641 aa7.96□□□□□ -1.14
SHMT1-211ENST00000618902 EIF2AK4Q9P2K8 1649 aaKnown RBP7.96□□□□□ -1.14
SHMT1-211ENST00000618902 RIMS1Q86UR5 1692 aaKnown RBP7.95□□□□□ -1.14
SHMT1-211ENST00000618902 LMTK3Q96Q04 1460 aa7.95□□□□□ -1.14
SHMT1-211ENST00000618902 GGT6Q6P531 493 aa7.95□□□□□ -1.14
SHMT1-211ENST00000618902 NAIPQ13075 1403 aa7.95□□□□□ -1.14
SHMT1-211ENST00000618902 RNF17Q9BXT8 1623 aaKnown RBP7.94□□□□□ -1.14
SHMT1-211ENST00000618902 CEBPAP49715 358 aaPredicted RBP7.94□□□□□ -1.14
SHMT1-211ENST00000618902 PREX1Q8TCU6 1659 aa7.94□□□□□ -1.14
SHMT1-211ENST00000618902 WASHC2CQ9Y4E1 1318 aa7.94□□□□□ -1.14
SHMT1-211ENST00000618902 ANKRD50Q9ULJ7 1429 aa7.94□□□□□ -1.14
SHMT1-211ENST00000618902 KDM5DQ9BY66 1539 aa7.93□□□□□ -1.14
SHMT1-211ENST00000618902 ZC3H13Q5T200 1668 aaKnown RBP7.92□□□□□ -1.14
SHMT1-211ENST00000618902 PKD2Q13563 968 aa7.92□□□□□ -1.14
SHMT1-211ENST00000618902 KANK1Q14678 1352 aa7.92□□□□□ -1.14
SHMT1-211ENST00000618902 ARHGAP31Q2M1Z3 1444 aa7.92□□□□□ -1.14
SHMT1-211ENST00000618902 PZPP20742 1482 aa7.92□□□□□ -1.14
SHMT1-211ENST00000618902 ABCC3O15438 1527 aa7.92□□□□□ -1.14
SHMT1-211ENST00000618902 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.91□□□□□ -1.14
SHMT1-211ENST00000618902 HFM1A2PYH4 1435 aa7.91□□□□□ -1.14
SHMT1-211ENST00000618902 NLRP1Q9C000 1473 aa7.91□□□□□ -1.14
SHMT1-211ENST00000618902 VWDEQ8N2E2 1590 aa7.91□□□□□ -1.14
SHMT1-211ENST00000618902 DEPDC5O75140 1603 aa7.91□□□□□ -1.14
SHMT1-211ENST00000618902 C3P01024 1663 aa7.9□□□□□ -1.14
SHMT1-211ENST00000618902 CLTCQ00610 1675 aaKnown RBP7.9□□□□□ -1.14
SHMT1-211ENST00000618902 PRDM15P57071 1507 aaPredicted RBP7.9□□□□□ -1.14
SHMT1-211ENST00000618902 PLA2R1Q13018 1463 aa7.9□□□□□ -1.14
SHMT1-211ENST00000618902 PTPRTO14522 1441 aa7.9□□□□□ -1.14
SHMT1-211ENST00000618902 FBXO31Q5XUX0 539 aaPredicted RBP7.89□□□□□ -1.15
SHMT1-211ENST00000618902 THEMISQ8N1K5 641 aaPredicted RBP7.89□□□□□ -1.15
SHMT1-211ENST00000618902 GCC2Q8IWJ2 1684 aa7.89□□□□□ -1.15
SHMT1-211ENST00000618902 UNC13BO14795 1591 aa7.88□□□□□ -1.15
SHMT1-211ENST00000618902 LMTK2Q8IWU2 1503 aa7.88□□□□□ -1.15
SHMT1-211ENST00000618902 HRCP23327 699 aa7.88□□□□□ -1.15
SHMT1-211ENST00000618902 CEP152O94986 1710 aa7.88□□□□□ -1.15
SHMT1-211ENST00000618902 A2ML1A8K2U0 1454 aa7.87□□□□□ -1.15
SHMT1-211ENST00000618902 RPRD2Q5VT52 1461 aaKnown RBP7.87□□□□□ -1.15
SHMT1-211ENST00000618902 SETD5Q9C0A6 1442 aa7.86□□□□□ -1.15
SHMT1-211ENST00000618902 NUP155O75694 1391 aa7.86□□□□□ -1.15
SHMT1-211ENST00000618902 TNRQ92752 1358 aa7.86□□□□□ -1.15
SHMT1-211ENST00000618902 ZNF142P52746 1687 aaPredicted RBP7.86□□□□□ -1.15
SHMT1-211ENST00000618902 SLC52A1Q9NWF4 448 aa7.86□□□□□ -1.15
SHMT1-211ENST00000618902 CFAP65Q6ZU64 1925 aaKnown RBP7.86□□□□□ -1.15
SHMT1-211ENST00000618902 CAMSAP1Q5T5Y3 1602 aa7.85□□□□□ -1.15
SHMT1-211ENST00000618902 RAB3GAP2Q9H2M9 1393 aa7.85□□□□□ -1.15
SHMT1-211ENST00000618902 ERVK-7P63135 1459 aa7.85□□□□□ -1.15
SHMT1-211ENST00000618902 IQSEC2Q5JU85 1478 aa7.85□□□□□ -1.15
SHMT1-211ENST00000618902 IQGAP3Q86VI3 1631 aa7.85□□□□□ -1.15
SHMT1-211ENST00000618902 SPATA31D1Q6ZQQ2 1576 aa7.84□□□□□ -1.15
SHMT1-211ENST00000618902 EFCAB6Q5THR3 1501 aa7.84□□□□□ -1.15
SHMT1-211ENST00000618902 HDGFP51858 240 aaKnown RBP7.84□□□□□ -1.15
SHMT1-211ENST00000618902 ANKLE2Q86XL3 938 aa7.84□□□□□ -1.15
SHMT1-211ENST00000618902 CEP170BQ9Y4F5 1589 aaPredicted RBP7.84□□□□□ -1.15
SHMT1-211ENST00000618902 KDM5AP29375 1690 aaKnown RBP7.83□□□□□ -1.16
SHMT1-211ENST00000618902 HSPA2P54652 639 aa7.83□□□□□ -1.16
SHMT1-211ENST00000618902 TRIM26Q12899 539 aaPredicted RBP7.83□□□□□ -1.16
SHMT1-211ENST00000618902 NOS1P29475 1434 aa7.83□□□□□ -1.16
SHMT1-211ENST00000618902 TET3O43151 1660 aa7.83□□□□□ -1.16
SHMT1-211ENST00000618902 MYO3AQ8NEV4 1616 aa7.82□□□□□ -1.16
SHMT1-211ENST00000618902 SYNMO15061 1565 aa7.82□□□□□ -1.16
SHMT1-211ENST00000618902 ZEB1P37275 1124 aaPredicted RBP7.82□□□□□ -1.16
SHMT1-211ENST00000618902 FBXO41Q8TF61 875 aa7.82□□□□□ -1.16
SHMT1-211ENST00000618902 TRIM52Q96A61 297 aa7.82□□□□□ -1.16
SHMT1-211ENST00000618902 E9PCH4 1651 aa7.82□□□□□ -1.16
SHMT1-211ENST00000618902 MED14O60244 1454 aa7.81□□□□□ -1.16
SHMT1-211ENST00000618902 UGGT1Q9NYU2 1555 aa7.81□□□□□ -1.16
SHMT1-211ENST00000618902 FOXD1Q16676 465 aa7.81□□□□□ -1.16
SHMT1-211ENST00000618902 STRCQ7RTU9 1775 aa7.8□□□□□ -1.16
SHMT1-211ENST00000618902 MPHOSPH9Q99550 1183 aa7.8□□□□□ -1.16
SHMT1-211ENST00000618902 EID1Q9Y6B2 187 aa7.8□□□□□ -1.16
SHMT1-211ENST00000618902 IDI1Q13907 227 aa7.79□□□□□ -1.16
SHMT1-211ENST00000618902 SLC4A1APQ9BWU0 796 aaKnown RBP7.79□□□□□ -1.16
SHMT1-211ENST00000618902 SLIT1O75093 1534 aa7.78□□□□□ -1.16
SHMT1-211ENST00000618902 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.78□□□□□ -1.16
SHMT1-211ENST00000618902 CERKQ8TCT0 537 aa7.78□□□□□ -1.16
SHMT1-211ENST00000618902 ARHGAP23Q9P227 1491 aa7.77□□□□□ -1.17
SHMT1-211ENST00000618902 PCGF6Q9BYE7 350 aa7.77□□□□□ -1.17
SHMT1-211ENST00000618902 PIK3C2BO00750 1634 aa7.77□□□□□ -1.17
SHMT1-211ENST00000618902 TMEM2Q9UHN6 1383 aa7.76□□□□□ -1.17
SHMT1-211ENST00000618902 STAG3Q9UJ98 1225 aa7.76□□□□□ -1.17
SHMT1-211ENST00000618902 CPS1P31327 1500 aa7.76□□□□□ -1.17
SHMT1-211ENST00000618902 CLTCL1P53675 1640 aa7.75□□□□□ -1.17
SHMT1-211ENST00000618902 NCKAP5LQ9HCH0 1330 aa7.75□□□□□ -1.17
SHMT1-211ENST00000618902 POLR1AO95602 1720 aaPredicted RBP7.75□□□□□ -1.17
SHMT1-211ENST00000618902 SPHKAPQ2M3C7 1700 aa7.75□□□□□ -1.17
SHMT1-211ENST00000618902 UBR1Q8IWV7 1749 aa7.75□□□□□ -1.17
SHMT1-211ENST00000618902 SCAF11Q99590 1463 aaKnown RBP7.75□□□□□ -1.17
SHMT1-211ENST00000618902 ANKRD30BQ9BXX2 1392 aa7.74□□□□□ -1.17
SHMT1-211ENST00000618902 TRPM2O94759 1503 aa7.74□□□□□ -1.17
SHMT1-211ENST00000618902 LTKP29376 864 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms