RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 SLC26A8Q96RN1 970 aa12.99□□□□□ -0.33
SMARCA1-205ENST00000617310 NAP1L2Q9ULW6 460 aaPredicted RBP12.99□□□□□ -0.33
SMARCA1-205ENST00000617310 TULP1O00294 542 aaPredicted RBP12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 EVA1CP58658 441 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CABP2Q9NPB3 220 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CHMP3Q9Y3E7 222 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 ITPRIPQ8IWB1 547 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 PPP4R2Q9NY27 417 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CASKIN1Q8WXD9 1431 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 FGD1P98174 961 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 TCERG1O14776 1098 aaKnown RBP12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 ANP32BQ92688 251 aaKnown RBP12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 GGNBP2Q9H3C7 697 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 USP35Q9P2H5 1018 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 RCAN3Q9UKA8 241 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 SYTL4Q96C24 671 aaPredicted RBP12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 STK31Q9BXU1 1019 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 NGEFQ8N5V2 710 aa12.96□□□□□ -0.34
SMARCA1-205ENST00000617310 CENPJQ9HC77 1338 aaPredicted RBP12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 MS4A1P11836 297 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 WDR97A6NE52 1622 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 PRXQ9BXM0 1461 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 NBPF1Q3BBV0 1214 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 ATF3P18847 181 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 PMFBP1Q8TBY8 1022 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 UACAQ9BZF9 1416 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 CASC1Q6TDU7 716 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 CGNL1Q0VF96 1302 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 NECTIN2Q92692 538 aa12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 NCLP19338 710 aaKnown RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 ISY1Q9ULR0 285 aaKnown RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 APAF1O14727 1248 aa12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 IPO8O15397 1037 aaKnown RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 PROSER2Q86WR7 435 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 GTF2E1P29083 439 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 PRKRIP1Q9H875 184 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 BECN1Q14457 450 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 CHMP4BQ9H444 224 aaKnown RBP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 CALD1Q05682 793 aaKnown RBP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 HMOX1P09601 288 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 NLRP6P59044 892 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 TEFQ10587 303 aa12.9□□□□□ -0.34
SMARCA1-205ENST00000617310 MSH5O43196 834 aa12.9□□□□□ -0.34
SMARCA1-205ENST00000617310 TROQ12816 1431 aaPredicted RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 CEBPAP49715 358 aaPredicted RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 RBM33Q96EV2 1170 aaKnown RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 PLB1Q6P1J6 1458 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 EIF2S2P20042 333 aaKnown RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 SPRYD3Q8NCJ5 442 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 PRAM1Q96QH2 718 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 ESCO1Q5FWF5 840 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 NLRP2Q9NX02 1062 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 CDK13Q14004 1512 aaKnown RBP12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 DNMBPQ6XZF7 1577 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 PLIN1O60240 522 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 TAF7LQ5H9L4 462 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 C1orf141Q5JVX7 400 aa12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 MEX3CQ5U5Q3 659 aaKnown RBP12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 MYBBP1AQ9BQG0 1328 aaKnown RBP12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 C9orf84Q5VXU9 1444 aa12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 XPCQ01831 940 aaPredicted RBP12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 KIAA0586Q9BVV6 1533 aa12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 KIF7Q2M1P5 1343 aa12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 GORABQ5T7V8 394 aa12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 SLC12A5Q9H2X9 1139 aa12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 DIAPH1O60610 1272 aaKnown RBP12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 THEMISQ8N1K5 641 aaPredicted RBP12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 LAMC3Q9Y6N6 1575 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 ABTB2Q8N961 1025 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 URB2Q14146 1524 aaKnown RBP12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 NBPF8Q3BBV2 869 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 LMOD3Q0VAK6 560 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ERICH3Q5RHP9 1530 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ARHGEF11O15085 1522 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ABCA10Q8WWZ4 1543 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 FBXO31Q5XUX0 539 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2BA6NNL0 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2EB1AL46 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 PIP4K2BP78356 416 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2AQ8IVF1 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 STRN4Q9NRL3 753 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 RIPK4P57078 832 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 HSP90AB1P08238 724 aaKnown RBP12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 DDRGK1Q96HY6 314 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 RAPGEF4Q8WZA2 1011 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 CD109Q6YHK3 1445 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 MTHFSP49914 203 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 KIF21AQ7Z4S6 1674 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 FRAT2O75474 233 aaPredicted RBP12.8□□□□□ -0.36
SMARCA1-205ENST00000617310 PHF23Q9BUL5 403 aaPredicted RBP12.8□□□□□ -0.36
SMARCA1-205ENST00000617310 GOLGA6L22H0YM25 854 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 CABP1Q9NZU7 370 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 TRIM6-TRIM34B2RNG4 842 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms