RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 SLC26A8Q96RN1 970 aa12.99□□□□□ -0.33
SMARCA1-205ENST00000617310 NAP1L2Q9ULW6 460 aaPredicted RBP12.99□□□□□ -0.33
SMARCA1-205ENST00000617310 TULP1O00294 542 aaPredicted RBP12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 EVA1CP58658 441 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CABP2Q9NPB3 220 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CHMP3Q9Y3E7 222 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 ITPRIPQ8IWB1 547 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 PPP4R2Q9NY27 417 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 CASKIN1Q8WXD9 1431 aa12.98□□□□□ -0.33
SMARCA1-205ENST00000617310 FGD1P98174 961 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 TCERG1O14776 1098 aaKnown RBP12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 ANP32BQ92688 251 aaKnown RBP12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 GGNBP2Q9H3C7 697 aa12.97□□□□□ -0.33
SMARCA1-205ENST00000617310 USP35Q9P2H5 1018 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 RCAN3Q9UKA8 241 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 SYTL4Q96C24 671 aaPredicted RBP12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 STK31Q9BXU1 1019 aa12.96□□□□□ -0.33
SMARCA1-205ENST00000617310 NGEFQ8N5V2 710 aa12.96□□□□□ -0.34
SMARCA1-205ENST00000617310 CENPJQ9HC77 1338 aaPredicted RBP12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 MS4A1P11836 297 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 WDR97A6NE52 1622 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 PRXQ9BXM0 1461 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 NBPF1Q3BBV0 1214 aa12.95□□□□□ -0.34
SMARCA1-205ENST00000617310 ATF3P18847 181 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 PMFBP1Q8TBY8 1022 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 UACAQ9BZF9 1416 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 CASC1Q6TDU7 716 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 CGNL1Q0VF96 1302 aa12.94□□□□□ -0.34
SMARCA1-205ENST00000617310 NECTIN2Q92692 538 aa12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 NCLP19338 710 aaKnown RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 ISY1Q9ULR0 285 aaKnown RBP12.93□□□□□ -0.34
SMARCA1-205ENST00000617310 APAF1O14727 1248 aa12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 IPO8O15397 1037 aaKnown RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 PROSER2Q86WR7 435 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 GTF2E1P29083 439 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 PRKRIP1Q9H875 184 aaPredicted RBP12.92□□□□□ -0.34
SMARCA1-205ENST00000617310 BECN1Q14457 450 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 CHMP4BQ9H444 224 aaKnown RBP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 CALD1Q05682 793 aaKnown RBP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 HMOX1P09601 288 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 NLRP6P59044 892 aa12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMARCA1-205ENST00000617310 TEFQ10587 303 aa12.9□□□□□ -0.34
SMARCA1-205ENST00000617310 MSH5O43196 834 aa12.9□□□□□ -0.34
SMARCA1-205ENST00000617310 TROQ12816 1431 aaPredicted RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 CEBPAP49715 358 aaPredicted RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 RBM33Q96EV2 1170 aaKnown RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 PLB1Q6P1J6 1458 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 EIF2S2P20042 333 aaKnown RBP12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 SPRYD3Q8NCJ5 442 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 PRAM1Q96QH2 718 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 ESCO1Q5FWF5 840 aa12.89□□□□□ -0.35
SMARCA1-205ENST00000617310 NLRP2Q9NX02 1062 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 CDK13Q14004 1512 aaKnown RBP12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 DNMBPQ6XZF7 1577 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 PLIN1O60240 522 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 TAF7LQ5H9L4 462 aa12.88□□□□□ -0.35
SMARCA1-205ENST00000617310 C1orf141Q5JVX7 400 aa12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 MEX3CQ5U5Q3 659 aaKnown RBP12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 MYBBP1AQ9BQG0 1328 aaKnown RBP12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 C9orf84Q5VXU9 1444 aa12.87□□□□□ -0.35
SMARCA1-205ENST00000617310 XPCQ01831 940 aaPredicted RBP12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 KIAA0586Q9BVV6 1533 aa12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 KIF7Q2M1P5 1343 aa12.86□□□□□ -0.35
SMARCA1-205ENST00000617310 GORABQ5T7V8 394 aa12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 SLC12A5Q9H2X9 1139 aa12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 DIAPH1O60610 1272 aaKnown RBP12.85□□□□□ -0.35
SMARCA1-205ENST00000617310 THEMISQ8N1K5 641 aaPredicted RBP12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 LAMC3Q9Y6N6 1575 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 ABTB2Q8N961 1025 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 URB2Q14146 1524 aaKnown RBP12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 NBPF8Q3BBV2 869 aa12.84□□□□□ -0.35
SMARCA1-205ENST00000617310 LMOD3Q0VAK6 560 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ERICH3Q5RHP9 1530 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ARHGEF11O15085 1522 aa12.83□□□□□ -0.36
SMARCA1-205ENST00000617310 ABCA10Q8WWZ4 1543 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 FBXO31Q5XUX0 539 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2BA6NNL0 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2EB1AL46 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 PIP4K2BP78356 416 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 NUTM2AQ8IVF1 878 aaPredicted RBP12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 STRN4Q9NRL3 753 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 RIPK4P57078 832 aa12.82□□□□□ -0.36
SMARCA1-205ENST00000617310 HSP90AB1P08238 724 aaKnown RBP12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 DDRGK1Q96HY6 314 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 RAPGEF4Q8WZA2 1011 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 CD109Q6YHK3 1445 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 MTHFSP49914 203 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 KIF21AQ7Z4S6 1674 aa12.81□□□□□ -0.36
SMARCA1-205ENST00000617310 FRAT2O75474 233 aaPredicted RBP12.8□□□□□ -0.36
SMARCA1-205ENST00000617310 PHF23Q9BUL5 403 aaPredicted RBP12.8□□□□□ -0.36
SMARCA1-205ENST00000617310 GOLGA6L22H0YM25 854 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 CABP1Q9NZU7 370 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 TRIM6-TRIM34B2RNG4 842 aa12.79□□□□□ -0.36
SMARCA1-205ENST00000617310 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms