RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 ZMYM4Q5VZL5 1548 aa26.14■■□□□ 1.77
VRK3-225ENST00000601912 EIF2AK4Q9P2K8 1649 aaKnown RBP26.14■■□□□ 1.77
VRK3-225ENST00000601912 FAM135AQ9P2D6 1515 aa26.12■■□□□ 1.77
VRK3-225ENST00000601912 KIF3BO15066 747 aa26.12■■□□□ 1.77
VRK3-225ENST00000601912 FOXD1Q16676 465 aa26.12■■□□□ 1.77
VRK3-225ENST00000601912 TIMELESSQ9UNS1 1208 aa26.12■■□□□ 1.77
VRK3-225ENST00000601912 MAGI2Q86UL8 1455 aa26.12■■□□□ 1.77
VRK3-225ENST00000601912 ABCA6Q8N139 1617 aa26.11■■□□□ 1.77
VRK3-225ENST00000601912 ANKRD30BQ9BXX2 1392 aa26.09■■□□□ 1.77
VRK3-225ENST00000601912 IQGAP3Q86VI3 1631 aa26.09■■□□□ 1.77
VRK3-225ENST00000601912 DIP2CQ9Y2E4 1556 aa26.08■■□□□ 1.77
VRK3-225ENST00000601912 KANK1Q14678 1352 aa26.07■■□□□ 1.76
VRK3-225ENST00000601912 DEPDC5O75140 1603 aa26.06■■□□□ 1.76
VRK3-225ENST00000601912 YEATS2Q9ULM3 1422 aa26.06■■□□□ 1.76
VRK3-225ENST00000601912 COL17A1Q9UMD9 1497 aaPredicted RBP26.04■■□□□ 1.76
VRK3-225ENST00000601912 TONSLQ96HA7 1378 aa26.02■■□□□ 1.76
VRK3-225ENST00000601912 PRDM15P57071 1507 aaPredicted RBP26■■□□□ 1.75
VRK3-225ENST00000601912 ATP10AO60312 1499 aa26■■□□□ 1.75
VRK3-225ENST00000601912 BCORL1Q5H9F3 1711 aa25.99■■□□□ 1.75
VRK3-225ENST00000601912 RNF17Q9BXT8 1623 aaKnown RBP25.99■■□□□ 1.75
VRK3-225ENST00000601912 VWDEQ8N2E2 1590 aa25.97■■□□□ 1.75
VRK3-225ENST00000601912 RPRD2Q5VT52 1461 aaKnown RBP25.96■■□□□ 1.75
VRK3-225ENST00000601912 MROH1Q8NDA8 1641 aa25.96■■□□□ 1.75
VRK3-225ENST00000601912 GGT6Q6P531 493 aa25.95■■□□□ 1.74
VRK3-225ENST00000601912 REREQ9P2R6 1566 aa25.92■■□□□ 1.74
VRK3-225ENST00000601912 TET3O43151 1660 aa25.92■■□□□ 1.74
VRK3-225ENST00000601912 ARHGEF40Q8TER5 1519 aa25.9■■□□□ 1.74
VRK3-225ENST00000601912 LMTK2Q8IWU2 1503 aa25.88■■□□□ 1.73
VRK3-225ENST00000601912 PPP1R15AO75807 674 aaPredicted RBP25.88■■□□□ 1.73
VRK3-225ENST00000601912 WASHC2CQ9Y4E1 1318 aa25.87■■□□□ 1.73
VRK3-225ENST00000601912 AGLP35573 1532 aa25.87■■□□□ 1.73
VRK3-225ENST00000601912 CCDC144AA2RUR9 1427 aa25.86■■□□□ 1.73
VRK3-225ENST00000601912 E9PCH4 1651 aa25.86■■□□□ 1.73
VRK3-225ENST00000601912 PLA2R1Q13018 1463 aa25.83■■□□□ 1.73
VRK3-225ENST00000601912 L3MBTL2Q969R5 705 aa25.83■■□□□ 1.73
VRK3-225ENST00000601912 EFCAB6Q5THR3 1501 aa25.83■■□□□ 1.72
VRK3-225ENST00000601912 CEP152O94986 1710 aa25.82■■□□□ 1.72
VRK3-225ENST00000601912 ABCC3O15438 1527 aa25.81■■□□□ 1.72
VRK3-225ENST00000601912 PPP6R1Q9UPN7 881 aa25.8■■□□□ 1.72
VRK3-225ENST00000601912 PTPRTO14522 1441 aa25.79■■□□□ 1.72
VRK3-225ENST00000601912 ZC3H13Q5T200 1668 aaKnown RBP25.78■■□□□ 1.72
VRK3-225ENST00000601912 SPHKAPQ2M3C7 1700 aa25.76■■□□□ 1.71
VRK3-225ENST00000601912 TRPM2O94759 1503 aa25.76■■□□□ 1.71
VRK3-225ENST00000601912 CAMSAP1Q5T5Y3 1602 aa25.73■■□□□ 1.71
VRK3-225ENST00000601912 NPATQ14207 1427 aa25.72■■□□□ 1.71
VRK3-225ENST00000601912 ARID4BQ4LE39 1312 aaPredicted RBP25.71■■□□□ 1.71
VRK3-225ENST00000601912 SIGLEC1Q9BZZ2 1709 aa25.71■■□□□ 1.71
VRK3-225ENST00000601912 ARHGAP31Q2M1Z3 1444 aa25.7■■□□□ 1.71
VRK3-225ENST00000601912 MLECQ14165 292 aa25.69■■□□□ 1.7
VRK3-225ENST00000601912 ZNF316A6NFI3 1004 aaPredicted RBP25.68■■□□□ 1.7
VRK3-225ENST00000601912 ESF1Q9H501 851 aaKnown RBP25.66■■□□□ 1.7
VRK3-225ENST00000601912 CNTLNQ9NXG0 1405 aa25.66■■□□□ 1.7
VRK3-225ENST00000601912 RGL3Q3MIN7 710 aa25.64■■□□□ 1.7
VRK3-225ENST00000601912 CLTCL1P53675 1640 aa25.64■■□□□ 1.7
VRK3-225ENST00000601912 DCAF11Q8TEB1 546 aa25.63■■□□□ 1.69
VRK3-225ENST00000601912 CFAP65Q6ZU64 1925 aaKnown RBP25.61■■□□□ 1.69
VRK3-225ENST00000601912 NOS1P29475 1434 aa25.61■■□□□ 1.69
VRK3-225ENST00000601912 SPATA31E1Q6ZUB1 1445 aa25.61■■□□□ 1.69
VRK3-225ENST00000601912 CLTCQ00610 1675 aaKnown RBP25.59■■□□□ 1.69
VRK3-225ENST00000601912 NBPF8Q3BBV2 869 aa25.59■■□□□ 1.69
VRK3-225ENST00000601912 KDM2AQ9Y2K7 1162 aa25.59■■□□□ 1.69
VRK3-225ENST00000601912 UHRF1BP1Q6BDS2 1440 aa25.57■■□□□ 1.68
VRK3-225ENST00000601912 ZNF326Q5BKZ1 582 aaKnown RBP25.57■■□□□ 1.68
VRK3-225ENST00000601912 NEURL4Q96JN8 1562 aa25.57■■□□□ 1.68
VRK3-225ENST00000601912 UGGT1Q9NYU2 1555 aa25.56■■□□□ 1.68
VRK3-225ENST00000601912 STAC3Q96MF2 364 aa25.55■■□□□ 1.68
VRK3-225ENST00000601912 KIF1BO60333 1816 aa25.55■■□□□ 1.68
VRK3-225ENST00000601912 SLC52A1Q9NWF4 448 aa25.54■■□□□ 1.68
VRK3-225ENST00000601912 PREX1Q8TCU6 1659 aa25.53■■□□□ 1.68
VRK3-225ENST00000601912 SYNMO15061 1565 aa25.51■■□□□ 1.67
VRK3-225ENST00000601912 ZMYM3Q14202 1370 aa25.51■■□□□ 1.67
VRK3-225ENST00000601912 ERVK-7P63135 1459 aa25.5■■□□□ 1.67
VRK3-225ENST00000601912 CHGAP10645 457 aaKnown RBP25.5■■□□□ 1.67
VRK3-225ENST00000601912 FBXO31Q5XUX0 539 aaPredicted RBP25.5■■□□□ 1.67
VRK3-225ENST00000601912 PIK3C2BO00750 1634 aa25.48■■□□□ 1.67
VRK3-225ENST00000601912 PRAG1Q86YV5 1406 aa25.47■■□□□ 1.67
VRK3-225ENST00000601912 ADGRB3O60242 1522 aa25.46■■□□□ 1.67
VRK3-225ENST00000601912 IDI1Q13907 227 aa25.46■■□□□ 1.67
VRK3-225ENST00000601912 RALGAPBQ86X10 1494 aa25.45■■□□□ 1.66
VRK3-225ENST00000601912 EIF4G2P78344 907 aaKnown RBP eCLIP25.45■■□□□ 1.661e-6■■■■■ 27.9
VRK3-225ENST00000601912 SPATA31D1Q6ZQQ2 1576 aa25.44■■□□□ 1.66
VRK3-225ENST00000601912 MROH2AA6NES4 1674 aa25.43■■□□□ 1.66
VRK3-225ENST00000601912 RPGRIP1LQ68CZ1 1315 aa25.42■■□□□ 1.66
VRK3-225ENST00000601912 ROCK2O75116 1388 aaKnown RBP25.38■■□□□ 1.65
VRK3-225ENST00000601912 MYOM2P54296 1465 aa25.38■■□□□ 1.65
VRK3-225ENST00000601912 HSPA5P11021 654 aaKnown RBP25.38■■□□□ 1.65
VRK3-225ENST00000601912 CARD11Q9BXL7 1154 aa25.38■■□□□ 1.65
VRK3-225ENST00000601912 FER1L4A9Z1Z3 1794 aa25.38■■□□□ 1.65
VRK3-225ENST00000601912 TRPM1Q7Z4N2 1603 aa25.37■■□□□ 1.65
VRK3-225ENST00000601912 HIRIP3Q9BW71 556 aaPredicted RBP25.36■■□□□ 1.65
VRK3-225ENST00000601912 STAG3Q9UJ98 1225 aa25.36■■□□□ 1.65
VRK3-225ENST00000601912 MADDQ8WXG6 1647 aa25.35■■□□□ 1.65
VRK3-225ENST00000601912 IFT172Q9UG01 1749 aa25.34■■□□□ 1.65
VRK3-225ENST00000601912 DIEXFQ68CQ4 756 aaKnown RBP25.34■■□□□ 1.65
VRK3-225ENST00000601912 TNRQ92752 1358 aa25.34■■□□□ 1.65
VRK3-225ENST00000601912 TMEM131LA2VDJ0 1609 aa25.33■■□□□ 1.65
VRK3-225ENST00000601912 USP47Q96K76 1375 aa25.31■■□□□ 1.64
VRK3-225ENST00000601912 PPLO60437 1756 aa25.31■■□□□ 1.64
VRK3-225ENST00000601912 VGFO15240 615 aaPredicted RBP25.31■■□□□ 1.64
VRK3-225ENST00000601912 GPRASP1Q5JY77 1395 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms