RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NAIPQ13075 1403 aa29.16■■■□□ 2.26
UPF1-209ENST00000600310 CNTLNQ9NXG0 1405 aa29.16■■■□□ 2.26
UPF1-209ENST00000600310 HFM1A2PYH4 1435 aa29.15■■■□□ 2.26
UPF1-209ENST00000600310 FER1L4A9Z1Z3 1794 aa29.15■■■□□ 2.26
UPF1-209ENST00000600310 PTPRMP28827 1452 aa29.15■■■□□ 2.26
UPF1-209ENST00000600310 RIMS1Q86UR5 1692 aaKnown RBP29.12■■■□□ 2.25
UPF1-209ENST00000600310 FAM135AQ9P2D6 1515 aa29.12■■■□□ 2.25
UPF1-209ENST00000600310 MROH1Q8NDA8 1641 aa29.12■■■□□ 2.25
UPF1-209ENST00000600310 WASHC2CQ9Y4E1 1318 aa29.11■■■□□ 2.25
UPF1-209ENST00000600310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.09■■■□□ 2.253e-7■■■□□ 17.8
UPF1-209ENST00000600310 DEPDC5O75140 1603 aa29.09■■■□□ 2.25
UPF1-209ENST00000600310 PRDM15P57071 1507 aaPredicted RBP29.08■■■□□ 2.25
UPF1-209ENST00000600310 KDM5DQ9BY66 1539 aa29.08■■■□□ 2.25
UPF1-209ENST00000600310 ZMYM3Q14202 1370 aa29.07■■■□□ 2.24
UPF1-209ENST00000600310 KANK1Q14678 1352 aa29.06■■■□□ 2.24
UPF1-209ENST00000600310 GCC2Q8IWJ2 1684 aa29.05■■■□□ 2.24
UPF1-209ENST00000600310 CEBPAP49715 358 aaPredicted RBP29.04■■■□□ 2.24
UPF1-209ENST00000600310 ABCC3O15438 1527 aa29.04■■■□□ 2.24
UPF1-209ENST00000600310 CLTCQ00610 1675 aaKnown RBP29.03■■■□□ 2.24
UPF1-209ENST00000600310 MROH2AA6NES4 1674 aa29.02■■■□□ 2.24
UPF1-209ENST00000600310 VWDEQ8N2E2 1590 aa29.01■■■□□ 2.24
UPF1-209ENST00000600310 PLPPR3Q6T4P5 718 aa29■■■□□ 2.23
UPF1-209ENST00000600310 UNC13BO14795 1591 aa29■■■□□ 2.23
UPF1-209ENST00000600310 ZC3H13Q5T200 1668 aaKnown RBP28.99■■■□□ 2.23
UPF1-209ENST00000600310 SETD5Q9C0A6 1442 aa28.97■■■□□ 2.23
UPF1-209ENST00000600310 TRIM26Q12899 539 aaPredicted RBP28.97■■■□□ 2.23
UPF1-209ENST00000600310 ILDR1Q86SU0 546 aaPredicted RBP28.97■■■□□ 2.23
UPF1-209ENST00000600310 LMTK2Q8IWU2 1503 aa28.96■■■□□ 2.23
UPF1-209ENST00000600310 NUP155O75694 1391 aa28.96■■■□□ 2.23
UPF1-209ENST00000600310 C3P01024 1663 aa28.96■■■□□ 2.23
UPF1-209ENST00000600310 PZPP20742 1482 aa28.92■■■□□ 2.22
UPF1-209ENST00000600310 CEP152O94986 1710 aa28.92■■■□□ 2.22
UPF1-209ENST00000600310 ARHGAP31Q2M1Z3 1444 aa28.92■■■□□ 2.22
UPF1-209ENST00000600310 NPATQ14207 1427 aa28.91■■■□□ 2.22
UPF1-209ENST00000600310 CAMSAP1Q5T5Y3 1602 aa28.89■■■□□ 2.22
UPF1-209ENST00000600310 FBXO31Q5XUX0 539 aaPredicted RBP28.88■■■□□ 2.21
UPF1-209ENST00000600310 TRIM52Q96A61 297 aa28.88■■■□□ 2.21
UPF1-209ENST00000600310 ACIN1Q9UKV3 1341 aaKnown RBP28.88■■■□□ 2.21
UPF1-209ENST00000600310 IQGAP3Q86VI3 1631 aa28.87■■■□□ 2.21
UPF1-209ENST00000600310 RAB3GAP2Q9H2M9 1393 aa28.87■■■□□ 2.21
UPF1-209ENST00000600310 EFCAB6Q5THR3 1501 aa28.84■■■□□ 2.21
UPF1-209ENST00000600310 HRCP23327 699 aa28.83■■■□□ 2.21
UPF1-209ENST00000600310 TET3O43151 1660 aa28.83■■■□□ 2.21
UPF1-209ENST00000600310 ERVK-7P63135 1459 aa28.8■■■□□ 2.2
UPF1-209ENST00000600310 RPRD2Q5VT52 1461 aaKnown RBP28.8■■■□□ 2.2
UPF1-209ENST00000600310 TNRQ92752 1358 aa28.8■■■□□ 2.2
UPF1-209ENST00000600310 SETD1BQ9UPS6 1966 aaKnown RBP28.79■■■□□ 2.2
UPF1-209ENST00000600310 SPATA31D1Q6ZQQ2 1576 aa28.79■■■□□ 2.2
UPF1-209ENST00000600310 UHRF1BP1Q6BDS2 1440 aa28.76■■■□□ 2.19
UPF1-209ENST00000600310 SLC4A1APQ9BWU0 796 aaKnown RBP28.75■■■□□ 2.19
UPF1-209ENST00000600310 NOS1P29475 1434 aa28.74■■■□□ 2.19
UPF1-209ENST00000600310 PREX1Q8TCU6 1659 aa28.72■■■□□ 2.19
UPF1-209ENST00000600310 LMTK3Q96Q04 1460 aa28.72■■■□□ 2.19
UPF1-209ENST00000600310 MPHOSPH9Q99550 1183 aa28.71■■■□□ 2.19
UPF1-209ENST00000600310 E9PCH4 1651 aa28.7■■■□□ 2.19
UPF1-209ENST00000600310 PKD2Q13563 968 aa28.7■■■□□ 2.18
UPF1-209ENST00000600310 NLRP1Q9C000 1473 aa28.68■■■□□ 2.18
UPF1-209ENST00000600310 CFAP65Q6ZU64 1925 aaKnown RBP28.67■■■□□ 2.18
UPF1-209ENST00000600310 MYO3AQ8NEV4 1616 aa28.67■■■□□ 2.18
UPF1-209ENST00000600310 A2ML1A8K2U0 1454 aa28.65■■■□□ 2.18
UPF1-209ENST00000600310 SLC52A1Q9NWF4 448 aa28.64■■■□□ 2.18
UPF1-209ENST00000600310 SYNMO15061 1565 aa28.63■■■□□ 2.17
UPF1-209ENST00000600310 PTPRTO14522 1441 aa28.63■■■□□ 2.17
UPF1-209ENST00000600310 CEP170BQ9Y4F5 1589 aaPredicted RBP28.62■■■□□ 2.17
UPF1-209ENST00000600310 IDI1Q13907 227 aa28.62■■■□□ 2.17
UPF1-209ENST00000600310 HSPA2P54652 639 aa28.61■■■□□ 2.17
UPF1-209ENST00000600310 ZNF142P52746 1687 aaPredicted RBP28.59■■■□□ 2.17
UPF1-209ENST00000600310 FOXD1Q16676 465 aa28.58■■■□□ 2.17
UPF1-209ENST00000600310 PCGF6Q9BYE7 350 aa28.57■■■□□ 2.16
UPF1-209ENST00000600310 PLA2R1Q13018 1463 aa28.56■■■□□ 2.16
UPF1-209ENST00000600310 UGGT1Q9NYU2 1555 aa28.54■■■□□ 2.16
UPF1-209ENST00000600310 THEMISQ8N1K5 641 aaPredicted RBP28.54■■■□□ 2.16
UPF1-209ENST00000600310 SPHKAPQ2M3C7 1700 aa28.53■■■□□ 2.16
UPF1-209ENST00000600310 TRPM2O94759 1503 aa28.53■■■□□ 2.16
UPF1-209ENST00000600310 PIK3C2BO00750 1634 aa28.51■■■□□ 2.15
UPF1-209ENST00000600310 FBXO41Q8TF61 875 aa28.51■■■□□ 2.15
UPF1-209ENST00000600310 STAG3Q9UJ98 1225 aa28.5■■■□□ 2.15
UPF1-209ENST00000600310 UBR1Q8IWV7 1749 aa28.46■■■□□ 2.15
UPF1-209ENST00000600310 ADGRB3O60242 1522 aa28.45■■■□□ 2.15
UPF1-209ENST00000600310 KDM5AP29375 1690 aaKnown RBP28.45■■■□□ 2.14
UPF1-209ENST00000600310 CHGAP10645 457 aaKnown RBP28.43■■■□□ 2.14
UPF1-209ENST00000600310 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
UPF1-209ENST00000600310 ANKRD30BQ9BXX2 1392 aa28.42■■■□□ 2.14
UPF1-209ENST00000600310 CCDC144AA2RUR9 1427 aa28.41■■■□□ 2.14
UPF1-209ENST00000600310 TMEM131LA2VDJ0 1609 aa28.4■■■□□ 2.14
UPF1-209ENST00000600310 TMEM2Q9UHN6 1383 aa28.4■■■□□ 2.14
UPF1-209ENST00000600310 ARHGAP23Q9P227 1491 aa28.4■■■□□ 2.14
UPF1-209ENST00000600310 ANKLE2Q86XL3 938 aa28.39■■■□□ 2.14
UPF1-209ENST00000600310 SLIT1O75093 1534 aa28.38■■■□□ 2.13
UPF1-209ENST00000600310 NCKAP5LQ9HCH0 1330 aa28.38■■■□□ 2.13
UPF1-209ENST00000600310 DHX57Q6P158 1386 aaKnown RBP28.37■■■□□ 2.13
UPF1-209ENST00000600310 STRCQ7RTU9 1775 aa28.34■■■□□ 2.13
UPF1-209ENST00000600310 TXNDC2Q86VQ3 553 aa28.34■■■□□ 2.13
UPF1-209ENST00000600310 LTKP29376 864 aa28.33■■■□□ 2.13
UPF1-209ENST00000600310 EID1Q9Y6B2 187 aa28.33■■■□□ 2.13
UPF1-209ENST00000600310 DMRT2Q9Y5R5 561 aa28.32■■■□□ 2.12
UPF1-209ENST00000600310 HDGFP51858 240 aaKnown RBP28.31■■■□□ 2.12
UPF1-209ENST00000600310 SCAF11Q99590 1463 aaKnown RBP28.31■■■□□ 2.12
UPF1-209ENST00000600310 ZFYVE9O95405 1425 aa28.3■■■□□ 2.12
UPF1-209ENST00000600310 RIMS2Q9UQ26 1411 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms