RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 RIMS1Q86UR5 1692 aaKnown RBP20.89■□□□□ 0.93
VRK3-219ENST00000600137 ANKRD50Q9ULJ7 1429 aa20.87■□□□□ 0.93
VRK3-219ENST00000600137 NAIPQ13075 1403 aa20.85■□□□□ 0.93
VRK3-219ENST00000600137 DEPDC5O75140 1603 aa20.84■□□□□ 0.93
VRK3-219ENST00000600137 CEBPAP49715 358 aaPredicted RBP20.83■□□□□ 0.93
VRK3-219ENST00000600137 CNTLNQ9NXG0 1405 aa20.82■□□□□ 0.92
VRK3-219ENST00000600137 CLTCQ00610 1675 aaKnown RBP20.82■□□□□ 0.92
VRK3-219ENST00000600137 KDM5DQ9BY66 1539 aa20.81■□□□□ 0.92
VRK3-219ENST00000600137 ZMYM3Q14202 1370 aa20.81■□□□□ 0.92
VRK3-219ENST00000600137 HFM1A2PYH4 1435 aa20.8■□□□□ 0.92
VRK3-219ENST00000600137 PRDM15P57071 1507 aaPredicted RBP20.8■□□□□ 0.92
VRK3-219ENST00000600137 VWDEQ8N2E2 1590 aa20.8■□□□□ 0.92
VRK3-219ENST00000600137 MROH2AA6NES4 1674 aa20.8■□□□□ 0.92
VRK3-219ENST00000600137 C3P01024 1663 aa20.8■□□□□ 0.92
VRK3-219ENST00000600137 FAM135AQ9P2D6 1515 aa20.79■□□□□ 0.92
VRK3-219ENST00000600137 WASHC2CQ9Y4E1 1318 aa20.78■□□□□ 0.92
VRK3-219ENST00000600137 ABCC3O15438 1527 aa20.78■□□□□ 0.92
VRK3-219ENST00000600137 GCC2Q8IWJ2 1684 aa20.77■□□□□ 0.92
VRK3-219ENST00000600137 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
VRK3-219ENST00000600137 ESF1Q9H501 851 aaKnown RBP20.76■□□□□ 0.91
VRK3-219ENST00000600137 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.75■□□□□ 0.91
VRK3-219ENST00000600137 UNC13BO14795 1591 aa20.75■□□□□ 0.91
VRK3-219ENST00000600137 CEP152O94986 1710 aa20.74■□□□□ 0.91
VRK3-219ENST00000600137 ZC3H13Q5T200 1668 aaKnown RBP20.73■□□□□ 0.91
VRK3-219ENST00000600137 LMTK2Q8IWU2 1503 aa20.73■□□□□ 0.91
VRK3-219ENST00000600137 PLPPR3Q6T4P5 718 aa20.72■□□□□ 0.91
VRK3-219ENST00000600137 SETD1BQ9UPS6 1966 aaKnown RBP20.71■□□□□ 0.91
VRK3-219ENST00000600137 FBXO31Q5XUX0 539 aaPredicted RBP20.7■□□□□ 0.9
VRK3-219ENST00000600137 PZPP20742 1482 aa20.69■□□□□ 0.9
VRK3-219ENST00000600137 CAMSAP1Q5T5Y3 1602 aa20.69■□□□□ 0.9
VRK3-219ENST00000600137 KANK1Q14678 1352 aa20.69■□□□□ 0.9
VRK3-219ENST00000600137 ARHGAP31Q2M1Z3 1444 aa20.69■□□□□ 0.9
VRK3-219ENST00000600137 NUP155O75694 1391 aa20.67■□□□□ 0.9
VRK3-219ENST00000600137 NPATQ14207 1427 aa20.67■□□□□ 0.9
VRK3-219ENST00000600137 SETD5Q9C0A6 1442 aa20.67■□□□□ 0.9
VRK3-219ENST00000600137 IQGAP3Q86VI3 1631 aa20.67■□□□□ 0.9
VRK3-219ENST00000600137 CFAP65Q6ZU64 1925 aaKnown RBP20.65■□□□□ 0.9
VRK3-219ENST00000600137 EFCAB6Q5THR3 1501 aa20.63■□□□□ 0.89
VRK3-219ENST00000600137 TET3O43151 1660 aa20.62■□□□□ 0.89
VRK3-219ENST00000600137 SPATA31D1Q6ZQQ2 1576 aa20.61■□□□□ 0.89
VRK3-219ENST00000600137 ERVK-7P63135 1459 aa20.61■□□□□ 0.89
VRK3-219ENST00000600137 LMTK3Q96Q04 1460 aa20.61■□□□□ 0.89
VRK3-219ENST00000600137 RAB3GAP2Q9H2M9 1393 aa20.6■□□□□ 0.89
VRK3-219ENST00000600137 TRIM26Q12899 539 aaPredicted RBP20.6■□□□□ 0.89
VRK3-219ENST00000600137 PREX1Q8TCU6 1659 aa20.59■□□□□ 0.89
VRK3-219ENST00000600137 E9PCH4 1651 aa20.58■□□□□ 0.89
VRK3-219ENST00000600137 NOS1P29475 1434 aa20.58■□□□□ 0.88
VRK3-219ENST00000600137 TNRQ92752 1358 aa20.58■□□□□ 0.88
VRK3-219ENST00000600137 HRCP23327 699 aa20.57■□□□□ 0.88
VRK3-219ENST00000600137 RPRD2Q5VT52 1461 aaKnown RBP20.56■□□□□ 0.88
VRK3-219ENST00000600137 TRIM52Q96A61 297 aa20.56■□□□□ 0.88
VRK3-219ENST00000600137 MYO3AQ8NEV4 1616 aa20.54■□□□□ 0.88
VRK3-219ENST00000600137 UHRF1BP1Q6BDS2 1440 aa20.53■□□□□ 0.88
VRK3-219ENST00000600137 SYNMO15061 1565 aa20.53■□□□□ 0.88
VRK3-219ENST00000600137 HSPA2P54652 639 aa20.51■□□□□ 0.87
VRK3-219ENST00000600137 ZNF142P52746 1687 aaPredicted RBP20.51■□□□□ 0.87
VRK3-219ENST00000600137 A2ML1A8K2U0 1454 aa20.5■□□□□ 0.87
VRK3-219ENST00000600137 MPHOSPH9Q99550 1183 aa20.5■□□□□ 0.87
VRK3-219ENST00000600137 PTPRTO14522 1441 aa20.5■□□□□ 0.87
VRK3-219ENST00000600137 ACIN1Q9UKV3 1341 aaKnown RBP20.5■□□□□ 0.87
VRK3-219ENST00000600137 NLRP1Q9C000 1473 aa20.5■□□□□ 0.87
VRK3-219ENST00000600137 PKD2Q13563 968 aa20.49■□□□□ 0.87
VRK3-219ENST00000600137 IDI1Q13907 227 aa20.49■□□□□ 0.87
VRK3-219ENST00000600137 SLC4A1APQ9BWU0 796 aaKnown RBP20.49■□□□□ 0.87
VRK3-219ENST00000600137 CEP170BQ9Y4F5 1589 aaPredicted RBP20.49■□□□□ 0.87
VRK3-219ENST00000600137 PLA2R1Q13018 1463 aa20.49■□□□□ 0.87
VRK3-219ENST00000600137 SLC52A1Q9NWF4 448 aa20.45■□□□□ 0.86
VRK3-219ENST00000600137 PIK3C2BO00750 1634 aa20.45■□□□□ 0.86
VRK3-219ENST00000600137 FOXD1Q16676 465 aa20.44■□□□□ 0.86
VRK3-219ENST00000600137 UGGT1Q9NYU2 1555 aa20.43■□□□□ 0.86
VRK3-219ENST00000600137 SPHKAPQ2M3C7 1700 aa20.43■□□□□ 0.86
VRK3-219ENST00000600137 UBR1Q8IWV7 1749 aa20.42■□□□□ 0.86
VRK3-219ENST00000600137 STRCQ7RTU9 1775 aa20.41■□□□□ 0.86
VRK3-219ENST00000600137 THEMISQ8N1K5 641 aaPredicted RBP20.39■□□□□ 0.85
VRK3-219ENST00000600137 KDM5AP29375 1690 aaKnown RBP20.38■□□□□ 0.85
VRK3-219ENST00000600137 TRPM2O94759 1503 aa20.38■□□□□ 0.85
VRK3-219ENST00000600137 TMEM131LA2VDJ0 1609 aa20.36■□□□□ 0.85
VRK3-219ENST00000600137 CLTCL1P53675 1640 aa20.36■□□□□ 0.85
VRK3-219ENST00000600137 ARHGAP23Q9P227 1491 aa20.36■□□□□ 0.85
VRK3-219ENST00000600137 MYO5BQ9ULV0 1848 aa20.35■□□□□ 0.85
VRK3-219ENST00000600137 ADGRB3O60242 1522 aa20.34■□□□□ 0.85
VRK3-219ENST00000600137 SLIT1O75093 1534 aa20.33■□□□□ 0.85
VRK3-219ENST00000600137 NCKAP5LQ9HCH0 1330 aa20.33■□□□□ 0.85
VRK3-219ENST00000600137 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.85
VRK3-219ENST00000600137 ANKRD30BQ9BXX2 1392 aa20.33■□□□□ 0.84
VRK3-219ENST00000600137 LTKP29376 864 aa20.32■□□□□ 0.84
VRK3-219ENST00000600137 TMEM2Q9UHN6 1383 aa20.32■□□□□ 0.84
VRK3-219ENST00000600137 NEURL4Q96JN8 1562 aa20.29■□□□□ 0.84
VRK3-219ENST00000600137 STAG3Q9UJ98 1225 aa20.29■□□□□ 0.84
VRK3-219ENST00000600137 ZFYVE9O95405 1425 aa20.28■□□□□ 0.84
VRK3-219ENST00000600137 ANKLE2Q86XL3 938 aa20.28■□□□□ 0.84
VRK3-219ENST00000600137 MED14O60244 1454 aa20.27■□□□□ 0.84
VRK3-219ENST00000600137 CHGAP10645 457 aaKnown RBP20.26■□□□□ 0.83
VRK3-219ENST00000600137 KIF1BO60333 1816 aa20.25■□□□□ 0.83
VRK3-219ENST00000600137 POLR1AO95602 1720 aaPredicted RBP20.25■□□□□ 0.83
VRK3-219ENST00000600137 DHX57Q6P158 1386 aaKnown RBP20.25■□□□□ 0.83
VRK3-219ENST00000600137 TXNDC2Q86VQ3 553 aa20.25■□□□□ 0.83
VRK3-219ENST00000600137 CCDC144AA2RUR9 1427 aa20.24■□□□□ 0.83
VRK3-219ENST00000600137 SPATA31E1Q6ZUB1 1445 aa20.24■□□□□ 0.83
VRK3-219ENST00000600137 RIMS2Q9UQ26 1411 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms