RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 THEMISQ8N1K5 641 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-208ENST00000597172 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.65□□□□□ -0.06
TRIM28-208ENST00000597172 FAM135BQ49AJ0 1406 aa14.65□□□□□ -0.06
TRIM28-208ENST00000597172 MED14O60244 1454 aa14.63□□□□□ -0.07
TRIM28-208ENST00000597172 LRRC9Q6ZRR7 1453 aa14.63□□□□□ -0.07
TRIM28-208ENST00000597172 STRCP1A6NGW2 1772 aa14.62□□□□□ -0.07
TRIM28-208ENST00000597172 KIF14Q15058 1648 aa14.62□□□□□ -0.07
TRIM28-208ENST00000597172 TNRQ92752 1358 aa14.6□□□□□ -0.07
TRIM28-208ENST00000597172 FBXO31Q5XUX0 539 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-208ENST00000597172 SYNMO15061 1565 aa14.6□□□□□ -0.07
TRIM28-208ENST00000597172 ZNF772Q68DY9 489 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-208ENST00000597172 ABCC1P33527 1531 aa14.59□□□□□ -0.07
TRIM28-208ENST00000597172 MTUS2Q5JR59 1369 aa14.59□□□□□ -0.07
TRIM28-208ENST00000597172 SPAG9O60271 1321 aaKnown RBP14.58□□□□□ -0.08
TRIM28-208ENST00000597172 CDC42BPBQ9Y5S2 1711 aa14.58□□□□□ -0.08
TRIM28-208ENST00000597172 DEPDC5O75140 1603 aa14.57□□□□□ -0.08
TRIM28-208ENST00000597172 ITSN2Q9NZM3 1697 aa14.57□□□□□ -0.08
TRIM28-208ENST00000597172 TROQ12816 1431 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-208ENST00000597172 RXRBP28702 533 aa14.56□□□□□ -0.08
TRIM28-208ENST00000597172 IQGAP1P46940 1657 aa14.55□□□□□ -0.08
TRIM28-208ENST00000597172 FAM135AQ9P2D6 1515 aa14.54□□□□□ -0.08
TRIM28-208ENST00000597172 SAMD9LQ8IVG5 1584 aa14.54□□□□□ -0.08
TRIM28-208ENST00000597172 EHBP1L1Q8N3D4 1523 aa14.53□□□□□ -0.08
TRIM28-208ENST00000597172 A2MP01023 1474 aa14.53□□□□□ -0.08
TRIM28-208ENST00000597172 JCADQ9P266 1359 aa14.53□□□□□ -0.08
TRIM28-208ENST00000597172 MEX3CQ5U5Q3 659 aaKnown RBP14.52□□□□□ -0.09
TRIM28-208ENST00000597172 ZRANB1Q9UGI0 708 aa14.52□□□□□ -0.09
TRIM28-208ENST00000597172 FOXD1Q16676 465 aa14.51□□□□□ -0.09
TRIM28-208ENST00000597172 PLXNC1O60486 1568 aa14.51□□□□□ -0.09
TRIM28-208ENST00000597172 UGGT1Q9NYU2 1555 aa14.51□□□□□ -0.09
TRIM28-208ENST00000597172 NCOA2Q15596 1464 aa14.5□□□□□ -0.09
TRIM28-208ENST00000597172 ZNF777Q9ULD5 760 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-208ENST00000597172 MIA2Q96PC5 1412 aa14.49□□□□□ -0.09
TRIM28-208ENST00000597172 HNRNPMP52272 730 aaKnown RBP eCLIP14.49□□□□□ -0.09
TRIM28-208ENST00000597172 XIRP1Q702N8 1843 aaKnown RBP14.49□□□□□ -0.09
TRIM28-208ENST00000597172 NLRP1Q9C000 1473 aa14.49□□□□□ -0.09
TRIM28-208ENST00000597172 ROBO1Q9Y6N7 1651 aa14.49□□□□□ -0.09
TRIM28-208ENST00000597172 PREX2Q70Z35 1606 aa14.48□□□□□ -0.09
TRIM28-208ENST00000597172 CDK12Q9NYV4 1490 aaPredicted RBP14.48□□□□□ -0.09
TRIM28-208ENST00000597172 ATP7AQ04656 1500 aa14.46□□□□□ -0.09
TRIM28-208ENST00000597172 PZPP20742 1482 aa14.46□□□□□ -0.09
TRIM28-208ENST00000597172 KDM5DQ9BY66 1539 aa14.46□□□□□ -0.1
TRIM28-208ENST00000597172 SPATA31A6Q5VVP1 1343 aa14.45□□□□□ -0.1
TRIM28-208ENST00000597172 GPATCH8Q9UKJ3 1502 aaKnown RBP14.44□□□□□ -0.1
TRIM28-208ENST00000597172 TMEM94Q12767 1356 aa14.44□□□□□ -0.1
TRIM28-208ENST00000597172 CCNB3Q8WWL7 1395 aa14.44□□□□□ -0.1
TRIM28-208ENST00000597172 RBM33Q96EV2 1170 aaKnown RBP14.43□□□□□ -0.1
TRIM28-208ENST00000597172 LRP6O75581 1613 aa14.43□□□□□ -0.1
TRIM28-208ENST00000597172 MYOM3Q5VTT5 1437 aa14.42□□□□□ -0.1
TRIM28-208ENST00000597172 SETBP1Q9Y6X0 1596 aa14.42□□□□□ -0.1
TRIM28-208ENST00000597172 ZC3H13Q5T200 1668 aaKnown RBP14.42□□□□□ -0.1
TRIM28-208ENST00000597172 WASHC2CQ9Y4E1 1318 aa14.41□□□□□ -0.1
TRIM28-208ENST00000597172 SYCP2Q9BX26 1530 aa14.41□□□□□ -0.1
TRIM28-208ENST00000597172 PHLPP1O60346 1717 aa14.41□□□□□ -0.1
TRIM28-208ENST00000597172 NUTM2BA6NNL0 878 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-208ENST00000597172 NUTM2EB1AL46 878 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-208ENST00000597172 TRIM26Q12899 539 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-208ENST00000597172 NUTM2DQ5VT03 806 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-208ENST00000597172 NUTM2AQ8IVF1 878 aaPredicted RBP14.41□□□□□ -0.1
TRIM28-208ENST00000597172 SLAIN2Q9P270 581 aa14.4□□□□□ -0.1
TRIM28-208ENST00000597172 RRBP1Q9P2E9 1410 aaKnown RBP14.4□□□□□ -0.1
TRIM28-208ENST00000597172 INO80Q9ULG1 1556 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-208ENST00000597172 KIF3BO15066 747 aa14.39□□□□□ -0.11
TRIM28-208ENST00000597172 PROSER2Q86WR7 435 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-208ENST00000597172 CFDP1Q9UEE9 299 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-208ENST00000597172 FGD6Q6ZV73 1430 aa14.39□□□□□ -0.11
TRIM28-208ENST00000597172 LTKP29376 864 aa14.38□□□□□ -0.11
TRIM28-208ENST00000597172 TXNDC2Q86VQ3 553 aa14.38□□□□□ -0.11
TRIM28-208ENST00000597172 ZNF644Q9H582 1327 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-208ENST00000597172 CDC42BPAQ5VT25 1732 aa14.38□□□□□ -0.11
TRIM28-208ENST00000597172 SCAF11Q99590 1463 aaKnown RBP14.38□□□□□ -0.11
TRIM28-208ENST00000597172 KIAA1107Q9UPP5 1409 aa14.37□□□□□ -0.11
TRIM28-208ENST00000597172 ADGBQ8N7X0 1667 aa14.36□□□□□ -0.11
TRIM28-208ENST00000597172 DHX29Q7Z478 1369 aaKnown RBP14.35□□□□□ -0.11
TRIM28-208ENST00000597172 RGS12O14924 1447 aa14.35□□□□□ -0.11
TRIM28-208ENST00000597172 KCNA6P17658 529 aa14.35□□□□□ -0.11
TRIM28-208ENST00000597172 RBM6P78332 1123 aaKnown RBP14.35□□□□□ -0.11
TRIM28-208ENST00000597172 AFF2P51816 1311 aa14.35□□□□□ -0.11
TRIM28-208ENST00000597172 FAM50AQ14320 339 aaKnown RBP14.34□□□□□ -0.11
TRIM28-208ENST00000597172 QTRT2Q9H974 415 aaKnown RBP14.34□□□□□ -0.11
TRIM28-208ENST00000597172 ATAD2Q6PL18 1390 aa14.34□□□□□ -0.11
TRIM28-208ENST00000597172 PLEKHH2Q8IVE3 1493 aa14.33□□□□□ -0.12
TRIM28-208ENST00000597172 EID1Q9Y6B2 187 aa14.33□□□□□ -0.12
TRIM28-208ENST00000597172 COL16A1Q07092 1604 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-208ENST00000597172 MSH6P52701 1360 aa14.33□□□□□ -0.12
TRIM28-208ENST00000597172 PTPN23Q9H3S7 1636 aa14.32□□□□□ -0.12
TRIM28-208ENST00000597172 PCGF6Q9BYE7 350 aa14.31□□□□□ -0.12
TRIM28-208ENST00000597172 CAMSAP2Q08AD1 1489 aa14.29□□□□□ -0.12
TRIM28-208ENST00000597172 ARHGAP23Q9P227 1491 aa14.27□□□□□ -0.12
TRIM28-208ENST00000597172 ITGAEP38570 1179 aa14.27□□□□□ -0.13
TRIM28-208ENST00000597172 IFFO2Q5TF58 517 aa14.27□□□□□ -0.13
TRIM28-208ENST00000597172 NGLY1Q96IV0 654 aa14.27□□□□□ -0.13
TRIM28-208ENST00000597172 PRDM15P57071 1507 aaPredicted RBP14.26□□□□□ -0.13
TRIM28-208ENST00000597172 MBD5Q9P267 1494 aa14.26□□□□□ -0.13
TRIM28-208ENST00000597172 RTEL1-TNFRSF6BF6WH68 1400 aa14.26□□□□□ -0.13
TRIM28-208ENST00000597172 CCDC125Q86Z20 511 aa14.26□□□□□ -0.13
TRIM28-208ENST00000597172 SHPRHQ149N8 1683 aa14.26□□□□□ -0.13
TRIM28-208ENST00000597172 SLIT1O75093 1534 aa14.25□□□□□ -0.13
TRIM28-208ENST00000597172 UBR1Q8IWV7 1749 aa14.25□□□□□ -0.13
TRIM28-208ENST00000597172 SLC26A8Q96RN1 970 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms