RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 SPATA31E1Q6ZUB1 1445 aa23.63■■□□□ 1.37
SHKBP1-205ENST00000594973 CCDC144AA2RUR9 1427 aa23.62■■□□□ 1.37
SHKBP1-205ENST00000594973 CCDC7Q96M83 1385 aa23.6■■□□□ 1.37
SHKBP1-205ENST00000594973 ADGRL1O94910 1474 aa23.6■■□□□ 1.37
SHKBP1-205ENST00000594973 ZFYVE16Q7Z3T8 1539 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 CCER2I3L3R5 266 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 SCAPERQ9BY12 1400 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 IQGAP3Q86VI3 1631 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 RTEL1-TNFRSF6BF6WH68 1400 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 RGL3Q3MIN7 710 aa23.59■■□□□ 1.37
SHKBP1-205ENST00000594973 USP47Q96K76 1375 aa23.58■■□□□ 1.37
SHKBP1-205ENST00000594973 PLA2R1Q13018 1463 aa23.58■■□□□ 1.37
SHKBP1-205ENST00000594973 UHRF1BP1Q6BDS2 1440 aa23.57■■□□□ 1.36
SHKBP1-205ENST00000594973 MAGI2Q86UL8 1455 aa23.56■■□□□ 1.36
SHKBP1-205ENST00000594973 KIF7Q2M1P5 1343 aa23.56■■□□□ 1.36
SHKBP1-205ENST00000594973 PRKCSHP14314 528 aaPredicted RBP23.55■■□□□ 1.36
SHKBP1-205ENST00000594973 CARD11Q9BXL7 1154 aa23.54■■□□□ 1.36
SHKBP1-205ENST00000594973 CNTLNQ9NXG0 1405 aa23.53■■□□□ 1.36
SHKBP1-205ENST00000594973 FKBP8Q14318 412 aa23.53■■□□□ 1.36
SHKBP1-205ENST00000594973 RALGAPBQ86X10 1494 aa23.52■■□□□ 1.36
SHKBP1-205ENST00000594973 ATP7AQ04656 1500 aa23.52■■□□□ 1.36
SHKBP1-205ENST00000594973 POLR3GLQ9BT43 218 aa23.5■■□□□ 1.35
SHKBP1-205ENST00000594973 INO80Q9ULG1 1556 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-205ENST00000594973 CD109Q6YHK3 1445 aa23.48■■□□□ 1.35
SHKBP1-205ENST00000594973 BCANQ96GW7 911 aa23.48■■□□□ 1.35
SHKBP1-205ENST00000594973 KIF3BO15066 747 aa23.48■■□□□ 1.35
SHKBP1-205ENST00000594973 KDM5CP41229 1560 aa23.47■■□□□ 1.35
SHKBP1-205ENST00000594973 ROCK2O75116 1388 aaKnown RBP23.46■■□□□ 1.35
SHKBP1-205ENST00000594973 NEFLP07196 543 aa23.44■■□□□ 1.34
SHKBP1-205ENST00000594973 A2MP01023 1474 aa23.44■■□□□ 1.34
SHKBP1-205ENST00000594973 PRAG1Q86YV5 1406 aa23.43■■□□□ 1.34
SHKBP1-205ENST00000594973 ATP10AO60312 1499 aa23.43■■□□□ 1.34
SHKBP1-205ENST00000594973 FANCIQ9NVI1 1328 aa23.42■■□□□ 1.34
SHKBP1-205ENST00000594973 BCORL1Q5H9F3 1711 aa23.42■■□□□ 1.34
SHKBP1-205ENST00000594973 DHX29Q7Z478 1369 aaKnown RBP23.42■■□□□ 1.34
SHKBP1-205ENST00000594973 ST20-MTHFSA0A0A6YYL1 179 aa23.42■■□□□ 1.34
SHKBP1-205ENST00000594973 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
SHKBP1-205ENST00000594973 ZNF518AQ6AHZ1 1483 aa23.41■■□□□ 1.34
SHKBP1-205ENST00000594973 KANK1Q14678 1352 aa23.4■■□□□ 1.34
SHKBP1-205ENST00000594973 MSH5O43196 834 aa23.4■■□□□ 1.34
SHKBP1-205ENST00000594973 NBPF1Q3BBV0 1214 aa23.39■■□□□ 1.34
SHKBP1-205ENST00000594973 POLR1AO95602 1720 aaPredicted RBP23.39■■□□□ 1.34
SHKBP1-205ENST00000594973 E9PCH4 1651 aa23.39■■□□□ 1.33
SHKBP1-205ENST00000594973 PRKRIP1Q9H875 184 aaPredicted RBP23.38■■□□□ 1.33
SHKBP1-205ENST00000594973 DEPDC5O75140 1603 aa23.38■■□□□ 1.33
SHKBP1-205ENST00000594973 ERICH6Q7L0X2 663 aa23.37■■□□□ 1.33
SHKBP1-205ENST00000594973 CNGB1Q14028 1251 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-205ENST00000594973 KIDINS220Q9ULH0 1771 aa23.36■■□□□ 1.33
SHKBP1-205ENST00000594973 POGZQ7Z3K3 1410 aa23.34■■□□□ 1.33
SHKBP1-205ENST00000594973 CCDC184Q52MB2 194 aa23.33■■□□□ 1.33
SHKBP1-205ENST00000594973 TRPM1Q7Z4N2 1603 aa23.33■■□□□ 1.33
SHKBP1-205ENST00000594973 ARID4BQ4LE39 1312 aaPredicted RBP23.32■■□□□ 1.32
SHKBP1-205ENST00000594973 CFAP74Q9C0B2 1584 aa23.32■■□□□ 1.32
SHKBP1-205ENST00000594973 RAPGEF3O95398 923 aa23.31■■□□□ 1.32
SHKBP1-205ENST00000594973 TRPM2O94759 1503 aa23.31■■□□□ 1.32
SHKBP1-205ENST00000594973 TET3O43151 1660 aa23.31■■□□□ 1.32
SHKBP1-205ENST00000594973 VWDEQ8N2E2 1590 aa23.3■■□□□ 1.32
SHKBP1-205ENST00000594973 PTPRTO14522 1441 aa23.3■■□□□ 1.32
SHKBP1-205ENST00000594973 EIF2AK4Q9P2K8 1649 aaKnown RBP23.3■■□□□ 1.32
SHKBP1-205ENST00000594973 PRDM15P57071 1507 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-205ENST00000594973 MROH1Q8NDA8 1641 aa23.29■■□□□ 1.32
SHKBP1-205ENST00000594973 SPHKAPQ2M3C7 1700 aa23.28■■□□□ 1.32
SHKBP1-205ENST00000594973 MRS2Q9HD23 443 aa23.26■■□□□ 1.31
SHKBP1-205ENST00000594973 GPRASP1Q5JY77 1395 aa23.26■■□□□ 1.31
SHKBP1-205ENST00000594973 HNRNPUQ00839 825 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHKBP1-205ENST00000594973 GGT6Q6P531 493 aa23.26■■□□□ 1.31
SHKBP1-205ENST00000594973 CLTCL1P53675 1640 aa23.26■■□□□ 1.31
SHKBP1-205ENST00000594973 MLH3Q9UHC1 1453 aa23.25■■□□□ 1.31
SHKBP1-205ENST00000594973 NEO1Q92859 1461 aa23.23■■□□□ 1.31
SHKBP1-205ENST00000594973 HECW2Q9P2P5 1572 aa23.23■■□□□ 1.31
SHKBP1-205ENST00000594973 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
SHKBP1-205ENST00000594973 RIMBP3CA6NJZ7 1639 aa23.2■■□□□ 1.31
SHKBP1-205ENST00000594973 RIMBP3BA6NNM3 1639 aa23.2■■□□□ 1.31
SHKBP1-205ENST00000594973 RIMBP3Q9UFD9 1639 aa23.2■■□□□ 1.31
SHKBP1-205ENST00000594973 FRMPD1Q5SYB0 1578 aa23.2■■□□□ 1.31
SHKBP1-205ENST00000594973 UGGT1Q9NYU2 1555 aa23.2■■□□□ 1.31
SHKBP1-205ENST00000594973 CEP152O94986 1710 aa23.2■■□□□ 1.3
SHKBP1-205ENST00000594973 EFCAB6Q5THR3 1501 aa23.19■■□□□ 1.3
SHKBP1-205ENST00000594973 PPRC1Q5VV67 1664 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-205ENST00000594973 ABCA6Q8N139 1617 aa23.17■■□□□ 1.3
SHKBP1-205ENST00000594973 TESK2Q96S53 571 aa23.16■■□□□ 1.3
SHKBP1-205ENST00000594973 FAM69CQ0P6D2 419 aa23.16■■□□□ 1.3
SHKBP1-205ENST00000594973 MADDQ8WXG6 1647 aa23.16■■□□□ 1.3
SHKBP1-205ENST00000594973 LAMC1P11047 1609 aa23.15■■□□□ 1.3
SHKBP1-205ENST00000594973 RNF17Q9BXT8 1623 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-205ENST00000594973 WASHC2CQ9Y4E1 1318 aa23.15■■□□□ 1.3
SHKBP1-205ENST00000594973 DISP3Q9P2K9 1392 aa23.14■■□□□ 1.3
SHKBP1-205ENST00000594973 MAP3K4Q9Y6R4 1608 aa23.14■■□□□ 1.29
SHKBP1-205ENST00000594973 LMTK2Q8IWU2 1503 aa23.14■■□□□ 1.29
SHKBP1-205ENST00000594973 CHGAP10645 457 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-205ENST00000594973 STAC3Q96MF2 364 aa23.11■■□□□ 1.29
SHKBP1-205ENST00000594973 NPATQ14207 1427 aa23.11■■□□□ 1.29
SHKBP1-205ENST00000594973 TMF1P82094 1093 aa23.1■■□□□ 1.29
SHKBP1-205ENST00000594973 COL17A1Q9UMD9 1497 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-205ENST00000594973 DEKP35659 375 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-205ENST00000594973 YEATS2Q9ULM3 1422 aa23.08■■□□□ 1.28
SHKBP1-205ENST00000594973 DIP2CQ9Y2E4 1556 aa23.08■■□□□ 1.28
SHKBP1-205ENST00000594973 ADGRF5Q8IZF2 1346 aa23.07■■□□□ 1.28
SHKBP1-205ENST00000594973 CFAP65Q6ZU64 1925 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-205ENST00000594973 GLI2P10070 1586 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms