RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 NISCHQ9Y2I1 1504 aa36.8■■■■□ 3.48
SHKBP1-205ENST00000594973 CCDC180Q9P1Z9 1646 aa31.63■■■□□ 2.65
SHKBP1-205ENST00000594973 ZCCHC6Q5VYS8 1495 aaKnown RBP30.99■■■□□ 2.55
SHKBP1-205ENST00000594973 SHROOM4Q9ULL8 1493 aa30.82■■■□□ 2.52
SHKBP1-205ENST00000594973 DCAF8L2P0C7V8 631 aa30.69■■■□□ 2.5
SHKBP1-205ENST00000594973 DCAF1Q9Y4B6 1507 aa30.23■■■□□ 2.43
SHKBP1-205ENST00000594973 SUPT5HO00267 1087 aaKnown RBP29.91■■■□□ 2.38
SHKBP1-205ENST00000594973 ABCC9O60706 1549 aa29.85■■■□□ 2.37
SHKBP1-205ENST00000594973 MYO15BQ96JP2 1530 aa29.63■■■□□ 2.33
SHKBP1-205ENST00000594973 SCRIBQ14160 1630 aa29.49■■■□□ 2.31
SHKBP1-205ENST00000594973 NACADO15069 1562 aa29.42■■■□□ 2.3
SHKBP1-205ENST00000594973 RB1CC1Q8TDY2 1594 aa29.09■■■□□ 2.25
SHKBP1-205ENST00000594973 RSF1Q96T23 1441 aaPredicted RBP28.85■■■□□ 2.21
SHKBP1-205ENST00000594973 CHIC1Q5VXU3 224 aa28.75■■■□□ 2.19
SHKBP1-205ENST00000594973 CECR2Q9BXF3 1484 aa28.71■■■□□ 2.19
SHKBP1-205ENST00000594973 MROH2BQ7Z745 1585 aa28.55■■■□□ 2.16
SHKBP1-205ENST00000594973 UNC13AQ9UPW8 1703 aa28.55■■■□□ 2.16
SHKBP1-205ENST00000594973 PABPN1Q86U42 306 aaKnown RBP eCLIP28.4■■■□□ 2.14
SHKBP1-205ENST00000594973 WIZO95785 1651 aa28.35■■■□□ 2.13
SHKBP1-205ENST00000594973 BAZ1AQ9NRL2 1556 aaPredicted RBP28.34■■■□□ 2.13
SHKBP1-205ENST00000594973 BICRAQ9NZM4 1560 aa28.26■■■□□ 2.11
SHKBP1-205ENST00000594973 SMARCA4P51532 1647 aa28.17■■■□□ 2.1
SHKBP1-205ENST00000594973 TRIM41Q8WV44 630 aa27.96■■■□□ 2.07
SHKBP1-205ENST00000594973 TOP2AP11388 1531 aaKnown RBP27.94■■■□□ 2.06
SHKBP1-205ENST00000594973 HRCP23327 699 aa27.93■■■□□ 2.06
SHKBP1-205ENST00000594973 LOC105371045A0A1W2PR82 267 aa27.85■■■□□ 2.05
SHKBP1-205ENST00000594973 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
SHKBP1-205ENST00000594973 SMARCA2P51531 1590 aa27.74■■■□□ 2.03
SHKBP1-205ENST00000594973 PEG3Q9GZU2 1588 aa27.67■■■□□ 2.02
SHKBP1-205ENST00000594973 EIF4G1Q04637 1599 aaKnown RBP27.66■■■□□ 2.02
SHKBP1-205ENST00000594973 FAM9AQ8IZU1 332 aaPredicted RBP27.66■■■□□ 2.02
SHKBP1-205ENST00000594973 ATAD2BQ9ULI0 1458 aa27.62■■■□□ 2.01
SHKBP1-205ENST00000594973 BAZ1BQ9UIG0 1483 aaKnown RBP27.52■■■□□ 2
SHKBP1-205ENST00000594973 PELP1Q8IZL8 1130 aaKnown RBP27.51■■□□□ 1.99
SHKBP1-205ENST00000594973 ABCC8Q09428 1581 aa27.47■■□□□ 1.99
SHKBP1-205ENST00000594973 EHMT2Q96KQ7 1210 aa27.42■■□□□ 1.98
SHKBP1-205ENST00000594973 NCAPD3P42695 1498 aa27.22■■□□□ 1.95
SHKBP1-205ENST00000594973 HMGXB3Q12766 1538 aa27.16■■□□□ 1.94
SHKBP1-205ENST00000594973 PCGF6Q9BYE7 350 aa27.15■■□□□ 1.94
SHKBP1-205ENST00000594973 WRNQ14191 1432 aaPredicted RBP eCLIP27.13■■□□□ 1.93
SHKBP1-205ENST00000594973 SOGA1O94964 1423 aa27.08■■□□□ 1.93
SHKBP1-205ENST00000594973 SYNJ1O43426 1573 aa27■■□□□ 1.91
SHKBP1-205ENST00000594973 PPARGC1BQ86YN6 1023 aaKnown RBP27■■□□□ 1.91
SHKBP1-205ENST00000594973 RUSC2Q8N2Y8 1516 aa26.96■■□□□ 1.91
SHKBP1-205ENST00000594973 CSRNP3Q8WYN3 585 aa26.89■■□□□ 1.9
SHKBP1-205ENST00000594973 CC2D2AQ9P2K1 1620 aa26.88■■□□□ 1.89
SHKBP1-205ENST00000594973 EEA1Q15075 1411 aa26.88■■□□□ 1.89
SHKBP1-205ENST00000594973 TRIM26Q12899 539 aaPredicted RBP26.82■■□□□ 1.88
SHKBP1-205ENST00000594973 CFTRP13569 1480 aa26.8■■□□□ 1.88
SHKBP1-205ENST00000594973 TOP2BQ02880 1626 aa26.75■■□□□ 1.87
SHKBP1-205ENST00000594973 UBTFP17480 764 aaKnown RBP26.73■■□□□ 1.87
SHKBP1-205ENST00000594973 TNIKQ9UKE5 1360 aa26.67■■□□□ 1.86
SHKBP1-205ENST00000594973 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
SHKBP1-205ENST00000594973 GOLGA3Q08378 1498 aa26.65■■□□□ 1.86
SHKBP1-205ENST00000594973 CEP162Q5TB80 1403 aa26.65■■□□□ 1.86
SHKBP1-205ENST00000594973 CADPSQ9ULU8 1353 aa26.65■■□□□ 1.86
SHKBP1-205ENST00000594973 CUX1P39880 1505 aa26.63■■□□□ 1.85
SHKBP1-205ENST00000594973 MYT1Q01538 1121 aa26.62■■□□□ 1.85
SHKBP1-205ENST00000594973 CEP164Q9UPV0 1460 aa26.58■■□□□ 1.85
SHKBP1-205ENST00000594973 KIF21BO75037 1637 aa26.51■■□□□ 1.83
SHKBP1-205ENST00000594973 PRDM2Q13029 1718 aa26.51■■□□□ 1.83
SHKBP1-205ENST00000594973 RAPGEF2Q9Y4G8 1499 aa26.47■■□□□ 1.83
SHKBP1-205ENST00000594973 SCAF1Q9H7N4 1312 aaKnown RBP26.4■■□□□ 1.82
SHKBP1-205ENST00000594973 ZEB1P37275 1124 aaPredicted RBP26.38■■□□□ 1.81
SHKBP1-205ENST00000594973 NESP48681 1621 aa26.38■■□□□ 1.81
SHKBP1-205ENST00000594973 FANCD2Q9BXW9 1451 aa26.38■■□□□ 1.81
SHKBP1-205ENST00000594973 KIF27Q86VH2 1401 aa26.37■■□□□ 1.81
SHKBP1-205ENST00000594973 RANGAP1P46060 587 aaPredicted RBP26.36■■□□□ 1.81
SHKBP1-205ENST00000594973 DNAJC5BQ9UF47 199 aa26.35■■□□□ 1.81
SHKBP1-205ENST00000594973 TTBK1Q5TCY1 1321 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-205ENST00000594973 CLIP1P30622 1438 aa26.31■■□□□ 1.8
SHKBP1-205ENST00000594973 PRXQ9BXM0 1461 aa26.3■■□□□ 1.8
SHKBP1-205ENST00000594973 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
SHKBP1-205ENST00000594973 CUX2O14529 1486 aa26.25■■□□□ 1.79
SHKBP1-205ENST00000594973 ERICH3Q5RHP9 1530 aa26.23■■□□□ 1.79
SHKBP1-205ENST00000594973 LAMC3Q9Y6N6 1575 aa26.16■■□□□ 1.78
SHKBP1-205ENST00000594973 DNMBPQ6XZF7 1577 aa26.13■■□□□ 1.77
SHKBP1-205ENST00000594973 IGF1RP08069 1367 aa26.13■■□□□ 1.77
SHKBP1-205ENST00000594973 TOPBP1Q92547 1522 aa26.12■■□□□ 1.77
SHKBP1-205ENST00000594973 VPS8Q8N3P4 1428 aa26.1■■□□□ 1.77
SHKBP1-205ENST00000594973 RAD54L2Q9Y4B4 1467 aa26.09■■□□□ 1.77
SHKBP1-205ENST00000594973 POLA1P09884 1462 aaPredicted RBP26.07■■□□□ 1.76
SHKBP1-205ENST00000594973 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
SHKBP1-205ENST00000594973 CARMIL1Q5VZK9 1371 aa26.02■■□□□ 1.76
SHKBP1-205ENST00000594973 URB2Q14146 1524 aaKnown RBP26.01■■□□□ 1.76
SHKBP1-205ENST00000594973 APLP2Q06481 763 aa25.99■■□□□ 1.75
SHKBP1-205ENST00000594973 ABCA10Q8WWZ4 1543 aa25.96■■□□□ 1.75
SHKBP1-205ENST00000594973 ARAP1Q96P48 1450 aa25.95■■□□□ 1.75
SHKBP1-205ENST00000594973 KIF21AQ7Z4S6 1674 aa25.91■■□□□ 1.74
SHKBP1-205ENST00000594973 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.88■■□□□ 1.73
SHKBP1-205ENST00000594973 ARHGAP35Q9NRY4 1499 aa25.85■■□□□ 1.73
SHKBP1-205ENST00000594973 TDRD9Q8NDG6 1382 aaKnown RBP25.83■■□□□ 1.73
SHKBP1-205ENST00000594973 ACIN1Q9UKV3 1341 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-205ENST00000594973 CCER1Q8TC90 406 aaPredicted RBP25.79■■□□□ 1.72
SHKBP1-205ENST00000594973 WDR97A6NE52 1622 aa25.75■■□□□ 1.71
SHKBP1-205ENST00000594973 KANK4Q5T7N3 995 aaPredicted RBP25.72■■□□□ 1.71
SHKBP1-205ENST00000594973 GAPVD1Q14C86 1478 aa25.71■■□□□ 1.71
SHKBP1-205ENST00000594973 CUL7Q14999 1698 aa25.71■■□□□ 1.71
SHKBP1-205ENST00000594973 HNRNPUL2Q1KMD3 747 aaKnown RBP25.69■■□□□ 1.7
SHKBP1-205ENST00000594973 ABCA5Q8WWZ7 1642 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms