RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ROCK1Q13464 1354 aa39.23■■■■□ 3.87
TRIM28-204ENST00000594806 FAM135AQ9P2D6 1515 aa39.22■■■■□ 3.87
TRIM28-204ENST00000594806 RNF17Q9BXT8 1623 aaKnown RBP39.19■■■■□ 3.86
TRIM28-204ENST00000594806 MROH2AA6NES4 1674 aa39.18■■■■□ 3.86
TRIM28-204ENST00000594806 ITGAEP38570 1179 aa39.15■■■■□ 3.86
TRIM28-204ENST00000594806 CLTCQ00610 1675 aaKnown RBP39.11■■■■□ 3.85
TRIM28-204ENST00000594806 C3P01024 1663 aa39.09■■■■□ 3.85
TRIM28-204ENST00000594806 KDM5DQ9BY66 1539 aa39.09■■■■□ 3.85
TRIM28-204ENST00000594806 ZMYM3Q14202 1370 aa39.08■■■■□ 3.85
TRIM28-204ENST00000594806 ANKRD50Q9ULJ7 1429 aa39.08■■■■□ 3.85
TRIM28-204ENST00000594806 WASHC2CQ9Y4E1 1318 aa39.08■■■■□ 3.85
TRIM28-204ENST00000594806 SETD1BQ9UPS6 1966 aaKnown RBP39.06■■■■□ 3.84
TRIM28-204ENST00000594806 CEBPAP49715 358 aaPredicted RBP39.04■■■■□ 3.84
TRIM28-204ENST00000594806 DEPDC5O75140 1603 aa39.03■■■■□ 3.84
TRIM28-204ENST00000594806 ZC3H13Q5T200 1668 aaKnown RBP39.03■■■■□ 3.84
TRIM28-204ENST00000594806 PLPPR3Q6T4P5 718 aa39.03■■■■□ 3.84
TRIM28-204ENST00000594806 MROH1Q8NDA8 1641 aa39.03■■■■□ 3.84
TRIM28-204ENST00000594806 PRDM15P57071 1507 aaPredicted RBP39.01■■■■□ 3.84
TRIM28-204ENST00000594806 KANK1Q14678 1352 aa38.97■■■■□ 3.83
TRIM28-204ENST00000594806 NPATQ14207 1427 aa38.97■■■■□ 3.83
TRIM28-204ENST00000594806 ABCC3O15438 1527 aa38.95■■■■□ 3.83
TRIM28-204ENST00000594806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.9■■■■□ 3.821e-14■■■■□ 25
TRIM28-204ENST00000594806 PZPP20742 1482 aa38.89■■■■□ 3.82
TRIM28-204ENST00000594806 PREX1Q8TCU6 1659 aa38.88■■■■□ 3.81
TRIM28-204ENST00000594806 VWDEQ8N2E2 1590 aa38.87■■■■□ 3.81
TRIM28-204ENST00000594806 CEP152O94986 1710 aa38.87■■■■□ 3.81
TRIM28-204ENST00000594806 HFM1A2PYH4 1435 aa38.84■■■■□ 3.81
TRIM28-204ENST00000594806 GCC2Q8IWJ2 1684 aa38.84■■■■□ 3.81
TRIM28-204ENST00000594806 LMTK2Q8IWU2 1503 aa38.84■■■■□ 3.81
TRIM28-204ENST00000594806 UNC13BO14795 1591 aa38.83■■■■□ 3.81
TRIM28-204ENST00000594806 NAIPQ13075 1403 aa38.83■■■■□ 3.81
TRIM28-204ENST00000594806 CAMSAP1Q5T5Y3 1602 aa38.83■■■■□ 3.81
TRIM28-204ENST00000594806 LMTK3Q96Q04 1460 aa38.82■■■■□ 3.81
TRIM28-204ENST00000594806 ARHGAP31Q2M1Z3 1444 aa38.81■■■■□ 3.8
TRIM28-204ENST00000594806 UHRF1BP1Q6BDS2 1440 aa38.81■■■■□ 3.8
TRIM28-204ENST00000594806 FBXO31Q5XUX0 539 aaPredicted RBP38.73■■■■□ 3.79
TRIM28-204ENST00000594806 TNRQ92752 1358 aa38.7■■■■□ 3.79
TRIM28-204ENST00000594806 SPATA31D1Q6ZQQ2 1576 aa38.7■■■■□ 3.79
TRIM28-204ENST00000594806 IQGAP3Q86VI3 1631 aa38.68■■■■□ 3.78
TRIM28-204ENST00000594806 NUP155O75694 1391 aa38.68■■■■□ 3.78
TRIM28-204ENST00000594806 TET3O43151 1660 aa38.68■■■■□ 3.78
TRIM28-204ENST00000594806 EFCAB6Q5THR3 1501 aa38.67■■■■□ 3.78
TRIM28-204ENST00000594806 MYO3AQ8NEV4 1616 aa38.67■■■■□ 3.78
TRIM28-204ENST00000594806 ERVK-7P63135 1459 aa38.66■■■■□ 3.78
TRIM28-204ENST00000594806 CFAP65Q6ZU64 1925 aaKnown RBP38.66■■■■□ 3.78
TRIM28-204ENST00000594806 RPRD2Q5VT52 1461 aaKnown RBP38.64■■■■□ 3.78
TRIM28-204ENST00000594806 ACIN1Q9UKV3 1341 aaKnown RBP38.63■■■■□ 3.77
TRIM28-204ENST00000594806 ZNF142P52746 1687 aaPredicted RBP38.62■■■■□ 3.77
TRIM28-204ENST00000594806 NLRP1Q9C000 1473 aa38.61■■■■□ 3.77
TRIM28-204ENST00000594806 CEP170BQ9Y4F5 1589 aaPredicted RBP38.59■■■■□ 3.77
TRIM28-204ENST00000594806 A2ML1A8K2U0 1454 aa38.59■■■■□ 3.77
TRIM28-204ENST00000594806 HSPA2P54652 639 aa38.58■■■■□ 3.77
TRIM28-204ENST00000594806 SETD5Q9C0A6 1442 aa38.54■■■■□ 3.76
TRIM28-204ENST00000594806 NOS1P29475 1434 aa38.52■■■■□ 3.76
TRIM28-204ENST00000594806 TRIM52Q96A61 297 aa38.49■■■■□ 3.75
TRIM28-204ENST00000594806 E9PCH4 1651 aa38.49■■■■□ 3.75
TRIM28-204ENST00000594806 THEMISQ8N1K5 641 aaPredicted RBP38.43■■■■□ 3.74
TRIM28-204ENST00000594806 SLC52A1Q9NWF4 448 aa38.43■■■■□ 3.74
TRIM28-204ENST00000594806 UGGT1Q9NYU2 1555 aa38.43■■■■□ 3.74
TRIM28-204ENST00000594806 PLA2R1Q13018 1463 aa38.42■■■■□ 3.74
TRIM28-204ENST00000594806 SYNMO15061 1565 aa38.4■■■■□ 3.74
TRIM28-204ENST00000594806 HRCP23327 699 aa38.37■■■■□ 3.73
TRIM28-204ENST00000594806 DMRT2Q9Y5R5 561 aa38.36■■■■□ 3.73
TRIM28-204ENST00000594806 STRCQ7RTU9 1775 aa38.36■■■■□ 3.73
TRIM28-204ENST00000594806 RAB3GAP2Q9H2M9 1393 aa38.35■■■■□ 3.73
TRIM28-204ENST00000594806 IDI1Q13907 227 aa38.35■■■■□ 3.73
TRIM28-204ENST00000594806 SLC4A1APQ9BWU0 796 aaKnown RBP38.35■■■■□ 3.73
TRIM28-204ENST00000594806 KDM5AP29375 1690 aaKnown RBP38.35■■■■□ 3.73
TRIM28-204ENST00000594806 PKD2Q13563 968 aa38.33■■■■□ 3.73
TRIM28-204ENST00000594806 UBR1Q8IWV7 1749 aa38.32■■■■□ 3.73
TRIM28-204ENST00000594806 PIK3C2BO00750 1634 aa38.31■■■■□ 3.72
TRIM28-204ENST00000594806 PTPRTO14522 1441 aa38.29■■■■□ 3.72
TRIM28-204ENST00000594806 SPHKAPQ2M3C7 1700 aa38.29■■■■□ 3.72
TRIM28-204ENST00000594806 STAG3Q9UJ98 1225 aa38.28■■■■□ 3.72
TRIM28-204ENST00000594806 ANKLE2Q86XL3 938 aa38.24■■■■□ 3.71
TRIM28-204ENST00000594806 MPHOSPH9Q99550 1183 aa38.24■■■■□ 3.71
TRIM28-204ENST00000594806 ADGRB3O60242 1522 aa38.22■■■■□ 3.71
TRIM28-204ENST00000594806 NCKAP5LQ9HCH0 1330 aa38.2■■■■□ 3.71
TRIM28-204ENST00000594806 TRIM26Q12899 539 aaPredicted RBP38.2■■■■□ 3.71
TRIM28-204ENST00000594806 SLIT1O75093 1534 aa38.19■■■■□ 3.7
TRIM28-204ENST00000594806 POLR1AO95602 1720 aaPredicted RBP38.19■■■■□ 3.7
TRIM28-204ENST00000594806 TRPM2O94759 1503 aa38.17■■■■□ 3.7
TRIM28-204ENST00000594806 ARHGAP23Q9P227 1491 aa38.17■■■■□ 3.7
TRIM28-204ENST00000594806 TMEM2Q9UHN6 1383 aa38.15■■■■□ 3.7
TRIM28-204ENST00000594806 TMEM131LA2VDJ0 1609 aa38.13■■■■□ 3.69
TRIM28-204ENST00000594806 EID1Q9Y6B2 187 aa38.12■■■■□ 3.69
TRIM28-204ENST00000594806 MED14O60244 1454 aa38.11■■■■□ 3.69
TRIM28-204ENST00000594806 NEURL4Q96JN8 1562 aa38.08■■■■□ 3.69
TRIM28-204ENST00000594806 SCAF11Q99590 1463 aaKnown RBP38.08■■■■□ 3.69
TRIM28-204ENST00000594806 MYO5BQ9ULV0 1848 aa38.08■■■■□ 3.69
TRIM28-204ENST00000594806 HDGFP51858 240 aaKnown RBP38.07■■■■□ 3.68
TRIM28-204ENST00000594806 TXNDC2Q86VQ3 553 aa38.07■■■■□ 3.68
TRIM28-204ENST00000594806 CHGAP10645 457 aaKnown RBP38.06■■■■□ 3.68
TRIM28-204ENST00000594806 CLTCL1P53675 1640 aa38.05■■■■□ 3.68
TRIM28-204ENST00000594806 NPHP4O75161 1426 aaPredicted RBP38.04■■■■□ 3.68
TRIM28-204ENST00000594806 FOXD1Q16676 465 aa38.03■■■■□ 3.68
TRIM28-204ENST00000594806 LTKP29376 864 aa38.02■■■■□ 3.68
TRIM28-204ENST00000594806 KIF1BO60333 1816 aa38.02■■■■□ 3.68
TRIM28-204ENST00000594806 IQGAP1P46940 1657 aa37.98■■■■□ 3.67
TRIM28-204ENST00000594806 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.98■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms