RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZMYM3Q14202 1370 aa22.89■■□□□ 1.26
UPF1-202ENST00000594243 ITGAEP38570 1179 aa22.89■■□□□ 1.25
UPF1-202ENST00000594243 EIF2AK4Q9P2K8 1649 aaKnown RBP22.89■■□□□ 1.25
UPF1-202ENST00000594243 WASHC2CQ9Y4E1 1318 aa22.88■■□□□ 1.25
UPF1-202ENST00000594243 PTPRKQ15262 1439 aa22.86■■□□□ 1.25
UPF1-202ENST00000594243 MROH2AA6NES4 1674 aa22.86■■□□□ 1.25
UPF1-202ENST00000594243 CLTCQ00610 1675 aaKnown RBP22.85■■□□□ 1.25
UPF1-202ENST00000594243 FAM135AQ9P2D6 1515 aa22.85■■□□□ 1.25
UPF1-202ENST00000594243 C3P01024 1663 aa22.84■■□□□ 1.25
UPF1-202ENST00000594243 ROCK1Q13464 1354 aa22.84■■□□□ 1.25
UPF1-202ENST00000594243 RNF17Q9BXT8 1623 aaKnown RBP22.82■■□□□ 1.24
UPF1-202ENST00000594243 KDM5DQ9BY66 1539 aa22.82■■□□□ 1.24
UPF1-202ENST00000594243 ANKRD50Q9ULJ7 1429 aa22.79■■□□□ 1.24
UPF1-202ENST00000594243 NPATQ14207 1427 aa22.78■■□□□ 1.24
UPF1-202ENST00000594243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.78■■□□□ 1.24
UPF1-202ENST00000594243 KANK1Q14678 1352 aa22.77■■□□□ 1.24
UPF1-202ENST00000594243 LMTK3Q96Q04 1460 aa22.76■■□□□ 1.23
UPF1-202ENST00000594243 ZC3H13Q5T200 1668 aaKnown RBP22.74■■□□□ 1.23
UPF1-202ENST00000594243 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
UPF1-202ENST00000594243 MROH1Q8NDA8 1641 aa22.74■■□□□ 1.23
UPF1-202ENST00000594243 SETD1BQ9UPS6 1966 aaKnown RBP22.74■■□□□ 1.23
UPF1-202ENST00000594243 ABCC3O15438 1527 aa22.73■■□□□ 1.23
UPF1-202ENST00000594243 PRDM15P57071 1507 aaPredicted RBP22.73■■□□□ 1.23
UPF1-202ENST00000594243 PREX1Q8TCU6 1659 aa22.73■■□□□ 1.23
UPF1-202ENST00000594243 DEPDC5O75140 1603 aa22.72■■□□□ 1.23
UPF1-202ENST00000594243 PZPP20742 1482 aa22.72■■□□□ 1.23
UPF1-202ENST00000594243 FBXO31Q5XUX0 539 aaPredicted RBP22.7■■□□□ 1.22
UPF1-202ENST00000594243 HSPA2P54652 639 aa22.68■■□□□ 1.22
UPF1-202ENST00000594243 ILDR1Q86SU0 546 aaPredicted RBP22.67■■□□□ 1.22
UPF1-202ENST00000594243 CEP152O94986 1710 aa22.65■■□□□ 1.22
UPF1-202ENST00000594243 ARHGAP31Q2M1Z3 1444 aa22.65■■□□□ 1.22
UPF1-202ENST00000594243 CAMSAP1Q5T5Y3 1602 aa22.64■■□□□ 1.22
UPF1-202ENST00000594243 TNRQ92752 1358 aa22.64■■□□□ 1.22
UPF1-202ENST00000594243 VWDEQ8N2E2 1590 aa22.64■■□□□ 1.22
UPF1-202ENST00000594243 LMTK2Q8IWU2 1503 aa22.64■■□□□ 1.21
UPF1-202ENST00000594243 NAIPQ13075 1403 aa22.62■■□□□ 1.21
UPF1-202ENST00000594243 UNC13BO14795 1591 aa22.59■■□□□ 1.21
UPF1-202ENST00000594243 HFM1A2PYH4 1435 aa22.59■■□□□ 1.21
UPF1-202ENST00000594243 NUP155O75694 1391 aa22.59■■□□□ 1.21
UPF1-202ENST00000594243 MYO3AQ8NEV4 1616 aa22.58■■□□□ 1.21
UPF1-202ENST00000594243 ERVK-7P63135 1459 aa22.58■■□□□ 1.2
UPF1-202ENST00000594243 SPATA31D1Q6ZQQ2 1576 aa22.58■■□□□ 1.2
UPF1-202ENST00000594243 CEP170BQ9Y4F5 1589 aaPredicted RBP22.56■■□□□ 1.2
UPF1-202ENST00000594243 A2ML1A8K2U0 1454 aa22.56■■□□□ 1.2
UPF1-202ENST00000594243 NLRP1Q9C000 1473 aa22.56■■□□□ 1.2
UPF1-202ENST00000594243 GCC2Q8IWJ2 1684 aa22.55■■□□□ 1.2
UPF1-202ENST00000594243 EFCAB6Q5THR3 1501 aa22.54■■□□□ 1.2
UPF1-202ENST00000594243 ZNF142P52746 1687 aaPredicted RBP22.54■■□□□ 1.2
UPF1-202ENST00000594243 DMRT2Q9Y5R5 561 aa22.53■■□□□ 1.2
UPF1-202ENST00000594243 RPRD2Q5VT52 1461 aaKnown RBP22.53■■□□□ 1.2
UPF1-202ENST00000594243 THEMISQ8N1K5 641 aaPredicted RBP22.52■■□□□ 1.2
UPF1-202ENST00000594243 IQGAP3Q86VI3 1631 aa22.52■■□□□ 1.2
UPF1-202ENST00000594243 TET3O43151 1660 aa22.52■■□□□ 1.2
UPF1-202ENST00000594243 TRIM52Q96A61 297 aa22.5■■□□□ 1.19
UPF1-202ENST00000594243 CFAP65Q6ZU64 1925 aaKnown RBP22.49■■□□□ 1.19
UPF1-202ENST00000594243 ACIN1Q9UKV3 1341 aaKnown RBP22.48■■□□□ 1.19
UPF1-202ENST00000594243 NOS1P29475 1434 aa22.48■■□□□ 1.19
UPF1-202ENST00000594243 UGGT1Q9NYU2 1555 aa22.47■■□□□ 1.19
UPF1-202ENST00000594243 PKD2Q13563 968 aa22.47■■□□□ 1.19
UPF1-202ENST00000594243 SLC52A1Q9NWF4 448 aa22.47■■□□□ 1.19
UPF1-202ENST00000594243 PLA2R1Q13018 1463 aa22.47■■□□□ 1.19
UPF1-202ENST00000594243 STRCQ7RTU9 1775 aa22.45■■□□□ 1.19
UPF1-202ENST00000594243 IDI1Q13907 227 aa22.44■■□□□ 1.18
UPF1-202ENST00000594243 STAG3Q9UJ98 1225 aa22.44■■□□□ 1.18
UPF1-202ENST00000594243 SETD5Q9C0A6 1442 aa22.43■■□□□ 1.18
UPF1-202ENST00000594243 NCKAP5LQ9HCH0 1330 aa22.43■■□□□ 1.18
UPF1-202ENST00000594243 ANKLE2Q86XL3 938 aa22.42■■□□□ 1.18
UPF1-202ENST00000594243 E9PCH4 1651 aa22.42■■□□□ 1.18
UPF1-202ENST00000594243 PTPRTO14522 1441 aa22.4■■□□□ 1.18
UPF1-202ENST00000594243 SLC4A1APQ9BWU0 796 aaKnown RBP22.4■■□□□ 1.18
UPF1-202ENST00000594243 SYNMO15061 1565 aa22.4■■□□□ 1.18
UPF1-202ENST00000594243 UBR1Q8IWV7 1749 aa22.37■■□□□ 1.17
UPF1-202ENST00000594243 PIK3C2BO00750 1634 aa22.36■■□□□ 1.17
UPF1-202ENST00000594243 FBXO41Q8TF61 875 aa22.34■■□□□ 1.17
UPF1-202ENST00000594243 EID1Q9Y6B2 187 aa22.34■■□□□ 1.17
UPF1-202ENST00000594243 KDM5AP29375 1690 aaKnown RBP22.33■■□□□ 1.17
UPF1-202ENST00000594243 RAB3GAP2Q9H2M9 1393 aa22.33■■□□□ 1.17
UPF1-202ENST00000594243 HRCP23327 699 aa22.32■■□□□ 1.16
UPF1-202ENST00000594243 MPHOSPH9Q99550 1183 aa22.32■■□□□ 1.16
UPF1-202ENST00000594243 TXNDC2Q86VQ3 553 aa22.31■■□□□ 1.16
UPF1-202ENST00000594243 TMEM2Q9UHN6 1383 aa22.3■■□□□ 1.16
UPF1-202ENST00000594243 CHGAP10645 457 aaKnown RBP22.3■■□□□ 1.16
UPF1-202ENST00000594243 SLIT1O75093 1534 aa22.3■■□□□ 1.16
UPF1-202ENST00000594243 ARHGAP23Q9P227 1491 aa22.29■■□□□ 1.16
UPF1-202ENST00000594243 POLR1AO95602 1720 aaPredicted RBP22.29■■□□□ 1.16
UPF1-202ENST00000594243 HDGFP51858 240 aaKnown RBP22.29■■□□□ 1.16
UPF1-202ENST00000594243 ADGRB3O60242 1522 aa22.29■■□□□ 1.16
UPF1-202ENST00000594243 MED14O60244 1454 aa22.28■■□□□ 1.16
UPF1-202ENST00000594243 SPHKAPQ2M3C7 1700 aa22.28■■□□□ 1.16
UPF1-202ENST00000594243 NPHP4O75161 1426 aaPredicted RBP22.27■■□□□ 1.16
UPF1-202ENST00000594243 LTKP29376 864 aa22.27■■□□□ 1.16
UPF1-202ENST00000594243 SCAF11Q99590 1463 aaKnown RBP22.26■■□□□ 1.15
UPF1-202ENST00000594243 NEURL4Q96JN8 1562 aa22.25■■□□□ 1.15
UPF1-202ENST00000594243 TMEM131LA2VDJ0 1609 aa22.24■■□□□ 1.15
UPF1-202ENST00000594243 TRPM2O94759 1503 aa22.23■■□□□ 1.15
UPF1-202ENST00000594243 CERKQ8TCT0 537 aa22.23■■□□□ 1.15
UPF1-202ENST00000594243 FOXD1Q16676 465 aa22.22■■□□□ 1.15
UPF1-202ENST00000594243 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.22■■□□□ 1.15
UPF1-202ENST00000594243 RIMS2Q9UQ26 1411 aa22.19■■□□□ 1.14
UPF1-202ENST00000594243 IQGAP1P46940 1657 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms