RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CLTC	Q00610	1675 aa	Known RBP	14.13	□□□□□ -0.15
DNMT1-223	ENST00000591239	ANKRD30A	Q9BXX3	1397 aa		14.12	□□□□□ -0.15
DNMT1-223	ENST00000591239	WASHC2C	Q9Y4E1	1318 aa		14.12	□□□□□ -0.15
DNMT1-223	ENST00000591239	SETD1B	Q9UPS6	1966 aa	Known RBP	14.11	□□□□□ -0.15
DNMT1-223	ENST00000591239	NCOA1	Q15788	1441 aa		14.11	□□□□□ -0.15
DNMT1-223	ENST00000591239	HSPA2	P54652	639 aa		14.1	□□□□□ -0.15
DNMT1-223	ENST00000591239	EIF2AK4	Q9P2K8	1649 aa	Known RBP	14.1	□□□□□ -0.15
DNMT1-223	ENST00000591239	PREX1	Q8TCU6	1659 aa		14.1	□□□□□ -0.15
DNMT1-223	ENST00000591239	NPAT	Q14207	1427 aa		14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	UHRF1BP1	Q6BDS2	1440 aa		14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	ERBIN	Q96RT1	1412 aa		14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	RNF17	Q9BXT8	1623 aa	Known RBP	14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	KDM5D	Q9BY66	1539 aa		14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	FAM135A	Q9P2D6	1515 aa		14.09	□□□□□ -0.15
DNMT1-223	ENST00000591239	ADGRL2	O95490	1459 aa		14.08	□□□□□ -0.16
DNMT1-223	ENST00000591239	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	14.08	□□□□□ -0.16
DNMT1-223	ENST00000591239	PTPRK	Q15262	1439 aa		14.07	□□□□□ -0.16
DNMT1-223	ENST00000591239	MROH1	Q8NDA8	1641 aa		14.05	□□□□□ -0.16
DNMT1-223	ENST00000591239	ITGAE	P38570	1179 aa		14.05	□□□□□ -0.16
DNMT1-223	ENST00000591239	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.04	□□□□□ -0.16
DNMT1-223	ENST00000591239	PZP	P20742	1482 aa		14.04	□□□□□ -0.16
DNMT1-223	ENST00000591239	ABCC3	O15438	1527 aa		14.04	□□□□□ -0.16
DNMT1-223	ENST00000591239	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.03	□□□□□ -0.16	4e-7	■■■□□ 15.1
DNMT1-223	ENST00000591239	RRBP1	Q9P2E9	1410 aa	Known RBP	14.03	□□□□□ -0.16
DNMT1-223	ENST00000591239	ZC3H13	Q5T200	1668 aa	Known RBP	14.02	□□□□□ -0.16
DNMT1-223	ENST00000591239	PRDM15	P57071	1507 aa	Predicted RBP	14.02	□□□□□ -0.16
DNMT1-223	ENST00000591239	ROCK1	Q13464	1354 aa		14.02	□□□□□ -0.17
DNMT1-223	ENST00000591239	ANKRD50	Q9ULJ7	1429 aa		14.01	□□□□□ -0.17
DNMT1-223	ENST00000591239	DEPDC5	O75140	1603 aa		14.01	□□□□□ -0.17
DNMT1-223	ENST00000591239	KANK1	Q14678	1352 aa		14	□□□□□ -0.17
DNMT1-223	ENST00000591239	TNR	Q92752	1358 aa		13.99	□□□□□ -0.17
DNMT1-223	ENST00000591239	CEP152	O94986	1710 aa		13.99	□□□□□ -0.17
DNMT1-223	ENST00000591239	MYO3A	Q8NEV4	1616 aa		13.98	□□□□□ -0.17
DNMT1-223	ENST00000591239	CAMSAP1	Q5T5Y3	1602 aa		13.97	□□□□□ -0.17
DNMT1-223	ENST00000591239	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.97	□□□□□ -0.17
DNMT1-223	ENST00000591239	ZNF142	P52746	1687 aa	Predicted RBP	13.96	□□□□□ -0.17
DNMT1-223	ENST00000591239	A2ML1	A8K2U0	1454 aa		13.96	□□□□□ -0.17
DNMT1-223	ENST00000591239	ARHGAP31	Q2M1Z3	1444 aa		13.96	□□□□□ -0.18
DNMT1-223	ENST00000591239	STRC	Q7RTU9	1775 aa		13.96	□□□□□ -0.18
DNMT1-223	ENST00000591239	VWDE	Q8N2E2	1590 aa		13.96	□□□□□ -0.18
DNMT1-223	ENST00000591239	ERVK-7	P63135	1459 aa		13.95	□□□□□ -0.18
DNMT1-223	ENST00000591239	DMRT2	Q9Y5R5	561 aa		13.95	□□□□□ -0.18
DNMT1-223	ENST00000591239	SPATA31D1	Q6ZQQ2	1576 aa		13.95	□□□□□ -0.18
DNMT1-223	ENST00000591239	LMTK2	Q8IWU2	1503 aa		13.95	□□□□□ -0.18
DNMT1-223	ENST00000591239	CFAP65	Q6ZU64	1925 aa	Known RBP	13.94	□□□□□ -0.18
DNMT1-223	ENST00000591239	NLRP1	Q9C000	1473 aa		13.93	□□□□□ -0.18
DNMT1-223	ENST00000591239	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.91	□□□□□ -0.18
DNMT1-223	ENST00000591239	PLA2R1	Q13018	1463 aa		13.91	□□□□□ -0.18
DNMT1-223	ENST00000591239	UNC13B	O14795	1591 aa		13.91	□□□□□ -0.18
DNMT1-223	ENST00000591239	NCKAP5L	Q9HCH0	1330 aa		13.9	□□□□□ -0.18
DNMT1-223	ENST00000591239	EFCAB6	Q5THR3	1501 aa		13.9	□□□□□ -0.18
DNMT1-223	ENST00000591239	PKD2	Q13563	968 aa		13.9	□□□□□ -0.18
DNMT1-223	ENST00000591239	PTPRT	O14522	1441 aa		13.9	□□□□□ -0.19
DNMT1-223	ENST00000591239	UGGT1	Q9NYU2	1555 aa		13.89	□□□□□ -0.19
DNMT1-223	ENST00000591239	NAIP	Q13075	1403 aa		13.89	□□□□□ -0.19
DNMT1-223	ENST00000591239	NUP155	O75694	1391 aa		13.88	□□□□□ -0.19
DNMT1-223	ENST00000591239	FOXD1	Q16676	465 aa		13.87	□□□□□ -0.19
DNMT1-223	ENST00000591239	TET3	O43151	1660 aa		13.87	□□□□□ -0.19
DNMT1-223	ENST00000591239	RPRD2	Q5VT52	1461 aa	Known RBP	13.87	□□□□□ -0.19
DNMT1-223	ENST00000591239	ANKLE2	Q86XL3	938 aa		13.86	□□□□□ -0.19
DNMT1-223	ENST00000591239	HFM1	A2PYH4	1435 aa		13.86	□□□□□ -0.19
DNMT1-223	ENST00000591239	NOS1	P29475	1434 aa		13.86	□□□□□ -0.19
DNMT1-223	ENST00000591239	IQGAP3	Q86VI3	1631 aa		13.86	□□□□□ -0.19
DNMT1-223	ENST00000591239	IDI1	Q13907	227 aa		13.85	□□□□□ -0.19
DNMT1-223	ENST00000591239	GCC2	Q8IWJ2	1684 aa		13.84	□□□□□ -0.19
DNMT1-223	ENST00000591239	SYNM	O15061	1565 aa		13.83	□□□□□ -0.19
DNMT1-223	ENST00000591239	SLC52A1	Q9NWF4	448 aa		13.83	□□□□□ -0.2
DNMT1-223	ENST00000591239	UBR1	Q8IWV7	1749 aa		13.83	□□□□□ -0.2
DNMT1-223	ENST00000591239	STAG3	Q9UJ98	1225 aa		13.82	□□□□□ -0.2
DNMT1-223	ENST00000591239		E9PCH4	1651 aa		13.82	□□□□□ -0.2
DNMT1-223	ENST00000591239	PIK3C2B	O00750	1634 aa		13.81	□□□□□ -0.2
DNMT1-223	ENST00000591239	POLR1A	O95602	1720 aa	Predicted RBP	13.81	□□□□□ -0.2
DNMT1-223	ENST00000591239	NEURL4	Q96JN8	1562 aa		13.8	□□□□□ -0.2
DNMT1-223	ENST00000591239	CERK	Q8TCT0	537 aa		13.8	□□□□□ -0.2
DNMT1-223	ENST00000591239	TRIM52	Q96A61	297 aa		13.8	□□□□□ -0.2
DNMT1-223	ENST00000591239	MED14	O60244	1454 aa		13.79	□□□□□ -0.2
DNMT1-223	ENST00000591239	LTK	P29376	864 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	ILDR1	Q86SU0	546 aa	Predicted RBP	13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	TXNDC2	Q86VQ3	553 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	EID1	Q9Y6B2	187 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	TMEM2	Q9UHN6	1383 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	NPHP4	O75161	1426 aa	Predicted RBP	13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	ARHGAP23	Q9P227	1491 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	SLIT1	O75093	1534 aa		13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	KDM5A	P29375	1690 aa	Known RBP	13.78	□□□□□ -0.2
DNMT1-223	ENST00000591239	SCAF11	Q99590	1463 aa	Known RBP	13.77	□□□□□ -0.21
DNMT1-223	ENST00000591239	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.77	□□□□□ -0.21
DNMT1-223	ENST00000591239	LTBP4	Q8N2S1	1624 aa		13.76	□□□□□ -0.21
DNMT1-223	ENST00000591239	ADGRB3	O60242	1522 aa		13.76	□□□□□ -0.21
DNMT1-223	ENST00000591239	FBXO41	Q8TF61	875 aa		13.75	□□□□□ -0.21
DNMT1-223	ENST00000591239	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.75	□□□□□ -0.21
DNMT1-223	ENST00000591239	CHGA	P10645	457 aa	Known RBP	13.74	□□□□□ -0.21
DNMT1-223	ENST00000591239	IQGAP1	P46940	1657 aa		13.74	□□□□□ -0.21
DNMT1-223	ENST00000591239	SETD5	Q9C0A6	1442 aa		13.73	□□□□□ -0.21
DNMT1-223	ENST00000591239	TMEM131L	A2VDJ0	1609 aa		13.72	□□□□□ -0.21
DNMT1-223	ENST00000591239	SPHKAP	Q2M3C7	1700 aa		13.72	□□□□□ -0.21
DNMT1-223	ENST00000591239	MYO5B	Q9ULV0	1848 aa		13.71	□□□□□ -0.22
DNMT1-223	ENST00000591239	ACIN1	Q9UKV3	1341 aa	Known RBP	13.7	□□□□□ -0.22
DNMT1-223	ENST00000591239	ADRA2B	P18089	450 aa		13.7	□□□□□ -0.22
DNMT1-223	ENST00000591239	HDGF	P51858	240 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 227 ms